Wall clock time and date at job start Tue Mar 31 2020 18:26:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.45206 * 109.47027 * 2 1 4 4 C 1.34228 * 116.99821 * 180.02562 * 3 2 1 5 5 O 1.20823 * 120.00142 * 359.97438 * 4 3 2 6 6 C 1.50698 * 119.99793 * 180.02562 * 4 3 2 7 7 H 1.09004 * 109.46894 * 14.99764 * 6 4 3 8 8 F 1.39900 * 109.47331 * 255.00239 * 6 4 3 9 9 C 1.52998 * 109.47138 * 134.99461 * 6 4 3 10 10 C 1.53501 * 114.20712 * 184.99951 * 9 6 4 11 11 N 1.47068 * 87.98690 * 220.35180 * 10 9 6 12 12 C 1.34776 * 136.05707 * 207.08991 * 11 10 9 13 13 O 1.21589 * 119.99717 * 357.22885 * 12 11 10 14 14 C 1.47636 * 119.99986 * 177.23047 * 12 11 10 15 15 C 1.40017 * 119.89746 * 188.16138 * 14 12 11 16 16 C 1.36311 * 120.11118 * 180.02562 * 15 14 12 17 17 C 1.40894 * 119.88933 * 359.97438 * 16 15 14 18 18 C 1.41104 * 120.10062 * 179.97438 * 17 16 15 19 19 H 1.08006 * 120.00155 * 335.03624 * 18 17 16 20 20 C 1.40230 * 119.99995 * 155.32151 * 18 17 16 21 21 N 1.30650 * 119.99492 * 344.84724 * 20 18 17 22 22 Si 1.86801 * 120.00362 * 164.85686 * 20 18 17 23 23 H 1.48500 * 109.46721 * 359.97438 * 22 20 18 24 24 H 1.48493 * 109.47171 * 119.99356 * 22 20 18 25 25 H 1.48500 * 109.47028 * 239.99561 * 22 20 18 26 26 C 1.40881 * 119.79296 * 0.26107 * 17 16 15 27 27 C 1.36318 * 119.89117 * 359.47909 * 26 17 16 28 28 C 1.47071 * 87.88380 * 27.34226 * 11 10 9 29 29 H 1.09002 * 109.46984 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47492 * 299.99515 * 1 2 3 31 31 H 1.09000 * 109.47358 * 60.00454 * 1 2 3 32 32 H 1.09004 * 109.47293 * 239.99773 * 2 1 3 33 33 H 1.08998 * 109.47387 * 120.00097 * 2 1 3 34 34 H 1.08995 * 113.28811 * 318.06652 * 9 6 4 35 35 H 1.08996 * 113.46596 * 105.56454 * 10 9 6 36 36 H 1.09005 * 113.51882 * 335.13980 * 10 9 6 37 37 H 1.08008 * 119.93989 * 0.04344 * 15 14 12 38 38 H 1.08001 * 120.05859 * 179.97438 * 16 15 14 39 39 H 0.97005 * 119.99784 * 180.02562 * 21 20 18 40 40 H 1.08007 * 120.05346 * 179.71895 * 26 17 16 41 41 H 1.08003 * 119.94468 * 180.25335 * 27 26 17 42 42 H 1.08997 * 113.46557 * 87.44063 * 28 11 10 43 43 H 1.09000 * 113.46505 * 217.88216 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0005 6 6 3.9206 2.9374 0.0000 7 1 3.1422 3.6524 0.2668 8 9 4.4137 3.2387 -1.2741 9 6 5.0585 3.0183 1.0196 10 6 5.6456 4.4255 1.1973 11 7 6.9776 3.8053 1.2612 12 6 8.1639 4.1099 1.8236 13 8 8.3004 5.1580 2.4246 14 6 9.2975 3.1710 1.7099 15 6 10.4726 3.4047 2.4344 16 6 11.5222 2.5409 2.3323 17 6 11.4229 1.4111 1.4963 18 6 12.5068 0.5144 1.3868 19 1 13.5120 0.8551 1.5868 20 6 12.2796 -0.8178 1.0124 21 7 11.0701 -1.3101 1.0519 22 14 13.7062 -1.8884 0.4574 23 1 14.9635 -1.0994 0.5013 24 1 13.8256 -3.0611 1.3605 25 1 13.4636 -2.3556 -0.9311 26 6 10.2404 1.1829 0.7654 27 6 9.1941 2.0495 0.8781 28 6 6.4471 2.7097 0.4359 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 4.8359 2.5056 1.9553 35 1 5.3455 4.9065 2.1282 36 1 5.5070 5.0676 0.3275 37 1 10.5474 4.2706 3.0756 38 1 12.4283 2.7222 2.8912 39 1 10.9129 -2.2318 0.7933 40 1 10.1614 0.3207 0.1197 41 1 8.2856 1.8732 0.3213 42 1 6.5195 2.8987 -0.6351 43 1 6.8300 1.7290 0.7182 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294356147.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:10 Heat of formation + Delta-G solvation = -104.199578 kcal Electronic energy + Delta-G solvation = -28208.016684 eV Core-core repulsion = 23941.291461 eV Total energy + Delta-G solvation = -4266.725223 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.137 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -48.38183 -40.78898 -40.01066 -37.83756 -37.02223 -36.66544 -33.84910 -32.38686 -31.46326 -30.17204 -29.44164 -27.74918 -26.19577 -25.47563 -23.83119 -22.38014 -21.37443 -20.93529 -20.40845 -18.86160 -18.53329 -17.58488 -17.34969 -17.19309 -16.63709 -16.37309 -16.03696 -15.61279 -15.10268 -14.51472 -14.44678 -14.12693 -13.96494 -13.43684 -13.40411 -13.25268 -13.14549 -13.00266 -12.64025 -12.55940 -12.31993 -12.16318 -12.06304 -11.96596 -11.83635 -11.48255 -11.35967 -11.23961 -10.97770 -10.92454 -10.82207 -10.63903 -10.39149 -9.98749 -9.49950 -9.29238 -8.97293 -8.36264 -7.69112 -7.50763 -6.98870 -4.59004 1.67029 2.02720 2.23223 2.91633 2.96494 3.02007 3.06597 3.20318 3.75172 3.80622 3.86358 4.04028 4.20422 4.35577 4.54026 4.56871 4.58208 4.70054 4.88199 4.90536 5.22798 5.26588 5.34429 5.37133 5.46342 5.55138 5.58618 5.66023 5.75898 5.98399 6.03876 6.19438 6.32690 6.40241 6.80842 6.85125 7.07289 7.16836 7.26682 7.47279 7.69618 7.85843 7.89687 8.08716 8.24946 8.43359 8.65730 8.78118 8.99654 9.91846 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.011458 B = 0.002913 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2443.096588 B = 9608.147901 C =11613.415269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.059 3.941 3 O -0.354 6.354 4 C 0.440 3.560 5 O -0.472 6.472 6 C 0.126 3.874 7 H 0.124 0.876 8 F -0.176 7.176 9 C -0.156 4.156 10 C 0.117 3.883 11 N -0.649 5.649 12 C 0.603 3.397 13 O -0.571 6.571 14 C -0.279 4.279 15 C -0.023 4.023 16 C -0.238 4.238 17 C 0.127 3.873 18 C -0.440 4.440 19 H 0.085 0.915 20 C 0.072 3.928 21 N -0.773 5.773 22 Si 0.914 3.086 23 H -0.258 1.258 24 H -0.272 1.272 25 H -0.269 1.269 26 C -0.178 4.178 27 C -0.076 4.076 28 C 0.109 3.891 29 H 0.081 0.919 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.126 0.874 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.100 0.900 38 H 0.098 0.902 39 H 0.286 0.714 40 H 0.123 0.877 41 H 0.105 0.895 42 H 0.093 0.907 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.242 0.574 -3.945 19.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.014 4.014 3 O -0.271 6.271 4 C 0.279 3.721 5 O -0.356 6.356 6 C 0.088 3.912 7 H 0.141 0.859 8 F -0.157 7.157 9 C -0.176 4.176 10 C -0.006 4.006 11 N -0.385 5.385 12 C 0.403 3.597 13 O -0.453 6.453 14 C -0.283 4.283 15 C -0.043 4.043 16 C -0.257 4.257 17 C 0.124 3.876 18 C -0.468 4.468 19 H 0.103 0.897 20 C -0.149 4.149 21 N -0.396 5.396 22 Si 0.738 3.262 23 H -0.181 1.181 24 H -0.197 1.197 25 H -0.194 1.194 26 C -0.197 4.197 27 C -0.095 4.095 28 C -0.014 4.014 29 H 0.100 0.900 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.144 0.856 35 H 0.100 0.900 36 H 0.102 0.898 37 H 0.118 0.882 38 H 0.117 0.883 39 H 0.097 0.903 40 H 0.141 0.859 41 H 0.122 0.878 42 H 0.111 0.889 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -18.838 0.637 -3.578 19.186 hybrid contribution 0.499 -0.864 -0.394 1.073 sum -18.339 -0.227 -3.973 18.766 Atomic orbital electron populations 1.21817 0.92340 1.03192 1.03619 1.23136 0.95538 0.79607 1.03132 1.86502 1.23848 1.33154 1.83596 1.24000 0.81296 0.92801 0.73983 1.90766 1.60275 1.42494 1.42065 1.20926 0.97145 0.91966 0.81172 0.85857 1.92920 1.89078 1.93400 1.40278 1.23738 0.93583 1.00843 0.99414 1.22774 0.81778 0.93488 1.02587 1.49299 1.09812 1.25605 1.53780 1.18248 0.79686 0.85516 0.76290 1.90649 1.82453 1.26648 1.45519 1.18789 0.95331 1.00945 1.13224 1.20348 0.91883 0.96589 0.95447 1.20713 0.99043 1.00161 1.05808 1.17831 0.92496 0.90361 0.86926 1.19885 0.95313 0.93636 1.37984 0.89736 1.26114 0.97078 0.99063 0.92610 1.69744 1.22144 1.15847 1.31908 0.86147 0.81469 0.79434 0.79145 1.18106 1.19674 1.19406 1.21076 0.94511 1.00833 1.03304 1.21081 0.98043 0.93404 0.96975 1.23166 0.87883 0.93871 0.96517 0.90029 0.91341 0.91385 0.90847 0.90751 0.85610 0.89967 0.89782 0.88160 0.88342 0.90313 0.85888 0.87753 0.88935 0.88285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 10.29 37.15 0.38 -0.38 16 2 C 0.06 0.45 6.19 37.15 0.23 0.68 16 3 O -0.35 -3.30 10.22 -39.25 -0.40 -3.70 16 4 C 0.44 4.80 7.28 36.00 0.26 5.07 16 5 O -0.47 -6.69 16.41 -18.75 -0.31 -7.00 16 6 C 0.13 1.16 3.88 -27.88 -0.11 1.06 16 7 H 0.12 0.70 8.14 -51.93 -0.42 0.27 16 8 F -0.18 -1.94 15.53 2.25 0.03 -1.91 16 9 C -0.16 -1.76 3.66 -89.97 -0.33 -2.09 16 10 C 0.12 1.49 8.15 -8.50 -0.07 1.42 16 11 N -0.65 -11.55 3.68 -186.23 -0.69 -12.24 16 12 C 0.60 13.56 7.99 -12.42 -0.10 13.46 16 13 O -0.57 -14.17 17.13 5.29 0.09 -14.08 16 14 C -0.28 -6.66 5.89 -104.73 -0.62 -7.28 16 15 C -0.02 -0.57 9.52 -39.61 -0.38 -0.95 16 16 C -0.24 -5.89 9.73 -39.27 -0.38 -6.27 16 17 C 0.13 3.32 5.58 -106.81 -0.60 2.72 16 18 C -0.44 -11.15 9.06 -37.75 -0.34 -11.49 16 19 H 0.08 2.04 7.89 -52.48 -0.41 1.63 16 20 C 0.07 1.71 5.19 -17.31 -0.09 1.62 16 21 N -0.77 -18.89 10.81 55.56 0.60 -18.29 16 22 Si 0.91 17.61 29.59 -169.99 -5.03 12.58 16 23 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 24 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 25 H -0.27 -5.10 7.11 56.52 0.40 -4.69 16 26 C -0.18 -4.51 8.63 -39.27 -0.34 -4.85 16 27 C -0.08 -1.78 9.10 -39.61 -0.36 -2.14 16 28 C 0.11 1.63 5.90 -8.36 -0.05 1.58 16 29 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.07 0.57 8.13 -51.93 -0.42 0.15 16 33 H 0.07 0.57 8.13 -51.93 -0.42 0.15 16 34 H 0.13 1.35 8.12 -51.93 -0.42 0.93 16 35 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.08 0.94 8.09 -51.93 -0.42 0.52 16 37 H 0.10 2.34 7.65 -52.48 -0.40 1.94 16 38 H 0.10 2.26 8.06 -52.49 -0.42 1.84 16 39 H 0.29 6.28 8.29 -40.82 -0.34 5.94 16 40 H 0.12 3.17 6.07 -52.48 -0.32 2.85 16 41 H 0.10 2.15 3.83 -52.48 -0.20 1.95 16 42 H 0.09 1.33 6.96 -51.93 -0.36 0.97 16 43 H 0.10 1.65 6.14 -51.93 -0.32 1.33 16 LS Contribution 368.81 15.07 5.56 5.56 Total: -1.00 -31.81 368.81 -8.40 -40.20 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -5.37 Total: 6.72 kcal Atomic # 6 Polarization: -4.95 SS G_CDS: -2.88 Total: -7.84 kcal Atomic # 7 Polarization: -30.44 SS G_CDS: -0.08 Total: -30.53 kcal Atomic # 8 Polarization: -24.17 SS G_CDS: -0.62 Total: -24.78 kcal Atomic # 9 Polarization: -1.94 SS G_CDS: 0.03 Total: -1.91 kcal Atomic # 14 Polarization: 17.61 SS G_CDS: -5.03 Total: 12.58 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.81 -8.40 -40.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294356147.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.998 kcal (2) G-P(sol) polarization free energy of solvation -31.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds