Wall clock time and date at job start Tue Mar 31 2020 18:26:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.45206 * 109.47027 * 2 1 4 4 C 1.34228 * 116.99821 * 180.02562 * 3 2 1 5 5 O 1.20823 * 120.00142 * 359.97438 * 4 3 2 6 6 C 1.50698 * 119.99793 * 180.02562 * 4 3 2 7 7 H 1.09004 * 109.46894 * 14.99764 * 6 4 3 8 8 F 1.39900 * 109.47331 * 255.00239 * 6 4 3 9 9 C 1.52998 * 109.47138 * 134.99461 * 6 4 3 10 10 C 1.53501 * 114.20712 * 184.99951 * 9 6 4 11 11 N 1.47068 * 87.98690 * 220.35180 * 10 9 6 12 12 C 1.34776 * 136.05707 * 207.08991 * 11 10 9 13 13 O 1.21589 * 119.99717 * 357.22885 * 12 11 10 14 14 C 1.47636 * 119.99986 * 177.23047 * 12 11 10 15 15 C 1.40017 * 119.89746 * 188.16138 * 14 12 11 16 16 C 1.36311 * 120.11118 * 180.02562 * 15 14 12 17 17 C 1.40894 * 119.88933 * 359.97438 * 16 15 14 18 18 C 1.41104 * 120.10062 * 179.97438 * 17 16 15 19 19 H 1.08006 * 120.00155 * 335.03624 * 18 17 16 20 20 C 1.40230 * 119.99995 * 155.32151 * 18 17 16 21 21 N 1.30650 * 119.99492 * 344.84724 * 20 18 17 22 22 Si 1.86801 * 120.00362 * 164.85686 * 20 18 17 23 23 H 1.48500 * 109.46721 * 359.97438 * 22 20 18 24 24 H 1.48493 * 109.47171 * 119.99356 * 22 20 18 25 25 H 1.48500 * 109.47028 * 239.99561 * 22 20 18 26 26 C 1.40881 * 119.79296 * 0.26107 * 17 16 15 27 27 C 1.36318 * 119.89117 * 359.47909 * 26 17 16 28 28 C 1.47071 * 87.88380 * 27.34226 * 11 10 9 29 29 H 1.09002 * 109.46984 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47492 * 299.99515 * 1 2 3 31 31 H 1.09000 * 109.47358 * 60.00454 * 1 2 3 32 32 H 1.09004 * 109.47293 * 239.99773 * 2 1 3 33 33 H 1.08998 * 109.47387 * 120.00097 * 2 1 3 34 34 H 1.08995 * 113.28811 * 318.06652 * 9 6 4 35 35 H 1.08996 * 113.46596 * 105.56454 * 10 9 6 36 36 H 1.09005 * 113.51882 * 335.13980 * 10 9 6 37 37 H 1.08008 * 119.93989 * 0.04344 * 15 14 12 38 38 H 1.08001 * 120.05859 * 179.97438 * 16 15 14 39 39 H 0.97005 * 119.99784 * 180.02562 * 21 20 18 40 40 H 1.08007 * 120.05346 * 179.71895 * 26 17 16 41 41 H 1.08003 * 119.94468 * 180.25335 * 27 26 17 42 42 H 1.08997 * 113.46557 * 87.44063 * 28 11 10 43 43 H 1.09000 * 113.46505 * 217.88216 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0005 6 6 3.9206 2.9374 0.0000 7 1 3.1422 3.6524 0.2668 8 9 4.4137 3.2387 -1.2741 9 6 5.0585 3.0183 1.0196 10 6 5.6456 4.4255 1.1973 11 7 6.9776 3.8053 1.2612 12 6 8.1639 4.1099 1.8236 13 8 8.3004 5.1580 2.4246 14 6 9.2975 3.1710 1.7099 15 6 10.4726 3.4047 2.4344 16 6 11.5222 2.5409 2.3323 17 6 11.4229 1.4111 1.4963 18 6 12.5068 0.5144 1.3868 19 1 13.5120 0.8551 1.5868 20 6 12.2796 -0.8178 1.0124 21 7 11.0701 -1.3101 1.0519 22 14 13.7062 -1.8884 0.4574 23 1 14.9635 -1.0994 0.5013 24 1 13.8256 -3.0611 1.3605 25 1 13.4636 -2.3556 -0.9311 26 6 10.2404 1.1829 0.7654 27 6 9.1941 2.0495 0.8781 28 6 6.4471 2.7097 0.4359 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 4.8359 2.5056 1.9553 35 1 5.3455 4.9065 2.1282 36 1 5.5070 5.0676 0.3275 37 1 10.5474 4.2706 3.0756 38 1 12.4283 2.7222 2.8912 39 1 10.9129 -2.2318 0.7933 40 1 10.1614 0.3207 0.1197 41 1 8.2856 1.8732 0.3213 42 1 6.5195 2.8987 -0.6351 43 1 6.8300 1.7290 0.7182 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294356147.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:09 Heat of formation + Delta-G solvation = -121.735900 kcal Electronic energy + Delta-G solvation = -28208.777116 eV Core-core repulsion = 23941.291461 eV Total energy + Delta-G solvation = -4267.485655 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.137 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -49.20263 -41.73362 -41.30147 -39.50709 -38.49271 -37.81250 -35.69785 -33.21151 -32.58598 -31.72151 -31.35043 -29.05594 -27.58132 -26.98939 -24.65981 -23.59530 -22.80994 -22.60831 -21.52162 -20.31746 -19.39519 -19.34827 -18.36328 -18.20146 -17.86266 -17.64003 -17.19517 -16.94614 -16.60587 -15.87560 -15.59774 -15.24982 -15.06521 -15.00436 -14.92312 -14.62412 -14.32909 -13.91849 -13.88333 -13.73432 -13.63206 -13.47984 -13.29043 -13.22613 -12.95616 -12.86262 -12.65690 -12.53644 -12.45459 -12.29052 -12.00935 -11.76649 -11.57814 -11.45389 -11.23698 -11.09469 -10.69903 -9.83322 -9.61219 -9.40303 -8.79396 -6.52005 0.38924 0.81543 1.11321 1.27444 1.36655 1.40146 1.54013 1.86426 2.05949 2.15518 2.73652 2.90378 3.15094 3.45502 3.51973 3.65903 3.69786 3.96123 4.00056 4.03814 4.05764 4.23994 4.33294 4.35764 4.40569 4.44002 4.52007 4.63972 4.79264 4.83587 4.91024 4.93858 5.01126 5.03924 5.10594 5.16476 5.27548 5.35778 5.56686 5.80762 5.94453 5.97717 6.18404 6.45403 6.51646 6.66577 6.74308 6.85822 7.29684 8.14720 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.011458 B = 0.002913 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2443.096588 B = 9608.147901 C =11613.415269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.050 3.950 3 O -0.348 6.348 4 C 0.443 3.557 5 O -0.512 6.512 6 C 0.133 3.867 7 H 0.174 0.826 8 F -0.184 7.184 9 C -0.132 4.132 10 C 0.118 3.882 11 N -0.656 5.656 12 C 0.600 3.400 13 O -0.603 6.603 14 C -0.292 4.292 15 C -0.034 4.034 16 C -0.250 4.250 17 C 0.099 3.901 18 C -0.469 4.469 19 H 0.087 0.913 20 C 0.034 3.966 21 N -0.801 5.801 22 Si 0.991 3.009 23 H -0.256 1.256 24 H -0.263 1.263 25 H -0.261 1.261 26 C -0.199 4.199 27 C -0.071 4.071 28 C 0.097 3.903 29 H 0.097 0.903 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.134 0.866 35 H 0.095 0.905 36 H 0.108 0.892 37 H 0.105 0.895 38 H 0.108 0.892 39 H 0.296 0.704 40 H 0.114 0.886 41 H 0.129 0.871 42 H 0.102 0.898 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.228 0.387 -4.659 21.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.023 4.023 3 O -0.264 6.264 4 C 0.284 3.716 5 O -0.400 6.400 6 C 0.096 3.904 7 H 0.191 0.809 8 F -0.165 7.165 9 C -0.151 4.151 10 C -0.003 4.003 11 N -0.390 5.390 12 C 0.397 3.603 13 O -0.487 6.487 14 C -0.296 4.296 15 C -0.053 4.053 16 C -0.270 4.270 17 C 0.096 3.904 18 C -0.496 4.496 19 H 0.105 0.895 20 C -0.185 4.185 21 N -0.424 5.424 22 Si 0.811 3.189 23 H -0.179 1.179 24 H -0.187 1.187 25 H -0.185 1.185 26 C -0.218 4.218 27 C -0.089 4.089 28 C -0.025 4.025 29 H 0.116 0.884 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.152 0.848 35 H 0.113 0.887 36 H 0.126 0.874 37 H 0.123 0.877 38 H 0.126 0.874 39 H 0.107 0.893 40 H 0.132 0.868 41 H 0.146 0.854 42 H 0.120 0.880 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -20.902 0.454 -4.309 21.347 hybrid contribution 0.955 -0.826 -0.182 1.276 sum -19.947 -0.371 -4.491 20.450 Atomic orbital electron populations 1.21831 0.90041 1.04427 1.04020 1.23387 0.97328 0.78792 1.02798 1.86507 1.22851 1.34142 1.82919 1.24330 0.81556 0.92984 0.72754 1.90763 1.61188 1.43959 1.44043 1.21074 0.97197 0.92234 0.79942 0.80906 1.92909 1.89265 1.93376 1.40947 1.23542 0.92215 0.99365 1.00024 1.23097 0.78366 0.94489 1.04372 1.49281 1.10050 1.27078 1.52558 1.17933 0.80794 0.84752 0.76801 1.90614 1.83415 1.27555 1.47146 1.19131 0.96188 1.01421 1.12856 1.20516 0.92248 0.96729 0.95785 1.20874 0.99715 1.00257 1.06105 1.18183 0.93324 0.91230 0.87639 1.20156 0.95253 0.94748 1.39477 0.89490 1.27000 0.99881 0.99742 0.91842 1.69775 1.24080 1.16827 1.31749 0.85015 0.77654 0.77383 0.78891 1.17886 1.18717 1.18533 1.21089 0.95327 1.01364 1.04043 1.21318 0.98389 0.92646 0.96595 1.23343 0.90250 0.92082 0.96869 0.88410 0.90837 0.91022 0.91362 0.91061 0.84845 0.88656 0.87406 0.87674 0.87402 0.89263 0.86786 0.85394 0.88011 0.90337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 10.29 71.98 0.74 -0.38 16 2 C 0.05 0.69 6.19 71.98 0.45 1.14 16 3 O -0.35 -5.69 10.22 -51.40 -0.53 -6.21 16 4 C 0.44 8.76 7.28 71.24 0.52 9.28 16 5 O -0.51 -14.16 16.41 21.97 0.36 -13.80 16 6 C 0.13 2.01 3.88 29.85 0.12 2.13 16 7 H 0.17 1.03 8.14 -2.38 -0.02 1.01 16 8 F -0.18 -3.53 15.53 44.97 0.70 -2.83 16 9 C -0.13 -2.63 3.66 -10.37 -0.04 -2.67 16 10 C 0.12 2.67 8.15 83.18 0.68 3.34 16 11 N -0.66 -22.66 3.68 -861.36 -3.17 -25.82 16 12 C 0.60 27.05 7.99 86.73 0.69 27.75 16 13 O -0.60 -30.05 17.13 -4.00 -0.07 -30.12 16 14 C -0.29 -14.28 5.89 -19.93 -0.12 -14.39 16 15 C -0.03 -1.69 9.52 22.25 0.21 -1.48 16 16 C -0.25 -12.85 9.73 22.47 0.22 -12.63 16 17 C 0.10 5.38 5.58 -21.28 -0.12 5.26 16 18 C -0.47 -24.36 9.06 23.46 0.21 -24.15 16 19 H 0.09 4.31 7.89 -2.91 -0.02 4.29 16 20 C 0.03 1.62 5.19 85.35 0.44 2.06 16 21 N -0.80 -39.67 10.81 21.87 0.24 -39.43 16 22 Si 0.99 35.80 29.59 68.60 2.03 37.83 16 23 H -0.26 -9.06 7.11 99.48 0.71 -8.36 16 24 H -0.26 -9.06 7.11 99.48 0.71 -8.36 16 25 H -0.26 -9.03 7.11 99.48 0.71 -8.32 16 26 C -0.20 -10.45 8.63 22.47 0.19 -10.26 16 27 C -0.07 -3.41 9.10 22.25 0.20 -3.20 16 28 C 0.10 2.81 5.90 83.27 0.49 3.30 16 29 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.07 1.01 8.13 -2.39 -0.02 0.99 16 33 H 0.07 1.03 8.13 -2.39 -0.02 1.01 16 34 H 0.13 2.52 8.12 -2.39 -0.02 2.50 16 35 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.11 2.00 8.09 -2.38 -0.02 1.98 16 37 H 0.11 5.07 7.65 -2.91 -0.02 5.05 16 38 H 0.11 5.15 8.06 -2.91 -0.02 5.12 16 39 H 0.30 13.04 8.29 -92.70 -0.77 12.27 16 40 H 0.11 6.10 6.07 -2.91 -0.02 6.08 16 41 H 0.13 5.38 3.83 -2.91 -0.01 5.37 16 42 H 0.10 2.79 6.96 -2.39 -0.02 2.77 16 43 H 0.08 2.62 6.14 -2.39 -0.01 2.60 16 Total: -1.00 -71.41 368.81 5.50 -65.91 By element: Atomic # 1 Polarization: 28.33 SS G_CDS: 1.05 Total: 29.38 kcal Atomic # 6 Polarization: -19.79 SS G_CDS: 4.89 Total: -14.90 kcal Atomic # 7 Polarization: -62.32 SS G_CDS: -2.93 Total: -65.25 kcal Atomic # 8 Polarization: -49.90 SS G_CDS: -0.23 Total: -50.14 kcal Atomic # 9 Polarization: -3.53 SS G_CDS: 0.70 Total: -2.83 kcal Atomic # 14 Polarization: 35.80 SS G_CDS: 2.03 Total: 37.83 kcal Total: -71.41 5.50 -65.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294356147.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.823 kcal (2) G-P(sol) polarization free energy of solvation -71.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds