Wall clock time and date at job start Tue Mar 31 2020 18:15:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46502 * 109.47011 * 2 1 4 4 C 1.37095 * 119.99664 * 264.76975 * 3 2 1 5 5 H 1.08003 * 119.99809 * 138.85390 * 4 3 2 6 6 C 1.38947 * 120.00334 * 318.84998 * 4 3 2 7 7 N 1.31420 * 119.99661 * 341.83048 * 6 4 3 8 8 Si 1.86795 * 120.00406 * 161.83287 * 6 4 3 9 9 H 1.48502 * 109.47419 * 90.00089 * 8 6 4 10 10 H 1.48501 * 109.47216 * 210.00114 * 8 6 4 11 11 H 1.48495 * 109.47051 * 329.99781 * 8 6 4 12 12 C 1.34773 * 120.00125 * 84.76178 * 3 2 1 13 13 O 1.21290 * 119.99772 * 179.97438 * 12 3 2 14 14 C 1.50699 * 120.00049 * 0.02562 * 12 3 2 15 15 C 1.52999 * 109.47414 * 179.97438 * 14 12 3 16 16 N 1.46497 * 109.47369 * 179.97438 * 15 14 12 17 17 C 1.34777 * 119.99817 * 179.97438 * 16 15 14 18 18 O 1.21548 * 120.00198 * 359.97438 * 17 16 15 19 19 C 1.47852 * 119.99808 * 180.02562 * 17 16 15 20 20 C 1.39573 * 120.14469 * 180.02562 * 19 17 16 21 21 C 1.37951 * 119.85338 * 180.02562 * 20 19 17 22 22 C 1.38363 * 120.14634 * 359.97438 * 21 20 19 23 23 N 1.48008 * 119.85428 * 179.97438 * 22 21 20 24 24 O 1.21797 * 120.00473 * 0.02562 * 23 22 21 25 25 O 1.21797 * 120.00053 * 179.72214 * 23 22 21 26 26 C 1.38356 * 120.28926 * 0.25503 * 22 21 20 27 27 C 1.37963 * 120.14637 * 359.48887 * 26 22 21 28 28 H 1.09000 * 109.47172 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47274 * 300.00568 * 1 2 3 30 30 H 1.09006 * 109.47026 * 60.00432 * 1 2 3 31 31 H 1.08999 * 109.47257 * 239.99966 * 2 1 3 32 32 H 1.08993 * 109.46990 * 119.99879 * 2 1 3 33 33 H 0.97005 * 119.99888 * 179.97438 * 7 6 4 34 34 H 1.09003 * 109.47594 * 59.98864 * 14 12 3 35 35 H 1.08999 * 109.46625 * 299.99293 * 14 12 3 36 36 H 1.09003 * 109.47387 * 59.99081 * 15 14 12 37 37 H 1.09008 * 109.46471 * 299.99819 * 15 14 12 38 38 H 0.96996 * 119.99908 * 359.97438 * 16 15 14 39 39 H 1.07997 * 120.07230 * 359.97438 * 20 19 17 40 40 H 1.08002 * 119.93174 * 179.97438 * 21 20 19 41 41 H 1.08001 * 119.92858 * 179.72619 * 26 22 21 42 42 H 1.08001 * 120.07063 * 180.22726 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3488 1.9914 -1.1824 5 1 2.0743 3.0218 -1.3535 6 6 3.0371 1.2842 -2.1605 7 7 3.6792 0.1818 -1.8450 8 14 3.0500 1.9004 -3.9239 9 1 4.2056 2.8119 -4.1214 10 1 3.1660 0.7460 -4.8508 11 1 1.7885 2.6331 -4.2013 12 6 2.1425 2.0521 1.1623 13 8 2.5472 3.1955 1.1622 14 6 1.7796 1.3813 2.4620 15 6 2.0113 2.3538 3.6201 16 7 1.6580 1.7019 4.8835 17 6 1.7830 2.3725 6.0459 18 8 2.1894 3.5180 6.0460 19 6 1.4269 1.7143 7.3211 20 6 1.5547 2.4061 8.5265 21 6 1.2212 1.7860 9.7128 22 6 0.7604 0.4814 9.7094 23 7 0.4050 -0.1778 10.9860 24 8 0.5179 0.4281 12.0365 25 8 -0.0058 -1.3245 10.9856 26 6 0.6359 -0.2115 8.5183 27 6 0.9609 0.3987 7.3245 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 4.1594 -0.3122 -2.5280 34 1 2.4015 0.4969 2.6006 35 1 0.7302 1.0874 2.4384 36 1 1.3897 3.2384 3.4817 37 1 3.0609 2.6474 3.6434 38 1 1.3340 0.7876 4.8835 39 1 1.9146 3.4243 8.5306 40 1 1.3200 2.3200 10.6464 41 1 0.2797 -1.2311 8.5228 42 1 0.8598 -0.1422 6.3951 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299296349.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:35 Heat of formation + Delta-G solvation = -42.975700 kcal Electronic energy + Delta-G solvation = -27390.151738 eV Core-core repulsion = 23146.001343 eV Total energy + Delta-G solvation = -4244.150395 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.60055 -40.73888 -39.06941 -38.56519 -36.97399 -35.55629 -34.92202 -32.88769 -32.22163 -32.01549 -30.40916 -29.54780 -27.46641 -25.50445 -23.97301 -23.71590 -22.84425 -22.17671 -21.07675 -19.86989 -19.20185 -19.04543 -18.04416 -17.93691 -16.99945 -16.62477 -15.97649 -15.87616 -15.61422 -15.25766 -15.02805 -14.62992 -14.52325 -14.30540 -14.16970 -13.64048 -13.44865 -13.16700 -12.97878 -12.62622 -12.17687 -11.98442 -11.94407 -11.80091 -11.63068 -11.53802 -11.52829 -11.19348 -11.09895 -11.04241 -10.46118 -10.44065 -10.38221 -10.20914 -10.18378 -10.03310 -9.24287 -9.01026 -8.55370 -7.52790 -6.41187 -4.09695 -0.84556 0.34157 0.67310 0.92213 2.19950 2.71029 3.04898 3.12130 3.21025 3.25617 3.73625 3.78150 3.87351 4.01227 4.10214 4.24748 4.31698 4.61733 4.73464 4.93245 5.03156 5.06326 5.10126 5.17121 5.34320 5.40564 5.51664 5.62599 5.66019 5.88100 5.95089 6.03542 6.05060 6.12176 6.24414 6.29928 6.39606 6.75342 7.09632 7.15384 7.20504 7.50485 7.82489 8.20158 8.40760 9.09741 9.29223 9.89732 10.64080 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.027352 B = 0.001907 C = 0.001819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.463400 B =14682.818993 C =15390.720456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.102 3.898 3 N -0.439 5.439 4 C -0.310 4.310 5 H 0.088 0.912 6 C 0.039 3.961 7 N -0.872 5.872 8 Si 0.919 3.081 9 H -0.276 1.276 10 H -0.283 1.283 11 H -0.269 1.269 12 C 0.464 3.536 13 O -0.578 6.578 14 C -0.149 4.149 15 C 0.135 3.865 16 N -0.717 5.717 17 C 0.548 3.452 18 O -0.519 6.519 19 C -0.074 4.074 20 C -0.061 4.061 21 C -0.060 4.060 22 C -0.029 4.029 23 N 0.026 4.974 24 O -0.156 6.156 25 O -0.155 6.155 26 C -0.059 4.059 27 C -0.088 4.088 28 H 0.051 0.949 29 H 0.042 0.958 30 H 0.058 0.942 31 H 0.104 0.896 32 H 0.048 0.952 33 H 0.268 0.732 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.398 0.602 39 H 0.162 0.838 40 H 0.161 0.839 41 H 0.161 0.839 42 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.271 -5.207 17.998 20.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.022 4.022 3 N -0.158 5.158 4 C -0.438 4.438 5 H 0.106 0.894 6 C -0.166 4.166 7 N -0.509 5.509 8 Si 0.745 3.255 9 H -0.202 1.202 10 H -0.208 1.208 11 H -0.194 1.194 12 C 0.251 3.749 13 O -0.461 6.461 14 C -0.190 4.190 15 C 0.013 3.987 16 N -0.368 5.368 17 C 0.333 3.667 18 O -0.395 6.395 19 C -0.078 4.078 20 C -0.081 4.081 21 C -0.079 4.079 22 C -0.112 4.112 23 N 0.546 4.454 24 O -0.372 6.372 25 O -0.372 6.372 26 C -0.078 4.078 27 C -0.107 4.107 28 H 0.070 0.930 29 H 0.061 0.939 30 H 0.077 0.923 31 H 0.122 0.878 32 H 0.066 0.934 33 H 0.078 0.922 34 H 0.106 0.894 35 H 0.103 0.897 36 H 0.098 0.902 37 H 0.099 0.901 38 H 0.234 0.766 39 H 0.180 0.820 40 H 0.178 0.822 41 H 0.178 0.822 42 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -6.472 -3.638 17.206 18.740 hybrid contribution -0.213 -0.732 -0.567 0.950 sum -6.685 -4.370 16.639 18.457 Atomic orbital electron populations 1.22231 0.98164 1.00394 1.01590 1.21472 0.91607 0.85621 1.03510 1.43437 1.55866 1.11711 1.04785 1.19364 1.35013 0.98595 0.90808 0.89391 1.25436 0.93965 0.96513 1.00669 1.69920 1.29360 1.17531 1.34112 0.86065 0.79058 0.78370 0.82006 1.20210 1.20811 1.19361 1.20023 0.82401 0.87968 0.84508 1.90564 1.50113 1.18675 1.86756 1.21839 1.02971 0.99616 0.94579 1.21221 1.02596 0.95491 0.79410 1.46049 1.66554 1.17415 1.06820 1.18016 0.79142 0.86202 0.83323 1.90855 1.44849 1.16940 1.86881 1.20612 0.97797 0.94404 0.94947 1.21378 0.96053 1.01407 0.89242 1.21088 0.94224 0.91681 1.00881 1.21360 1.10287 0.95380 0.84164 1.43632 0.98189 1.00820 1.02761 1.94559 1.57235 1.65608 1.19825 1.94558 1.46721 1.02055 1.93850 1.21015 0.95819 1.01439 0.89531 1.21413 0.97213 0.93798 0.98312 0.93041 0.93930 0.92315 0.87807 0.93380 0.92206 0.89443 0.89723 0.90206 0.90075 0.76643 0.81998 0.82151 0.82156 0.82949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.62 10.15 37.16 0.38 -2.24 16 2 C 0.10 2.00 5.41 -4.04 -0.02 1.97 16 3 N -0.44 -10.35 2.50 -114.81 -0.29 -10.64 16 4 C -0.31 -8.23 8.84 -14.94 -0.13 -8.36 16 5 H 0.09 2.46 7.82 -52.48 -0.41 2.05 16 6 C 0.04 0.99 4.95 -17.47 -0.09 0.90 16 7 N -0.87 -22.65 11.61 55.50 0.64 -22.01 16 8 Si 0.92 19.99 29.59 -169.99 -5.03 14.96 16 9 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 10 H -0.28 -5.99 7.11 56.52 0.40 -5.58 16 11 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 12 C 0.46 10.43 7.59 -10.99 -0.08 10.35 16 13 O -0.58 -15.34 15.89 5.55 0.09 -15.25 16 14 C -0.15 -2.29 4.42 -27.88 -0.12 -2.41 16 15 C 0.14 2.01 4.96 -4.04 -0.02 1.99 16 16 N -0.72 -7.57 5.51 -61.25 -0.34 -7.90 16 17 C 0.55 6.33 7.77 -12.33 -0.10 6.24 16 18 O -0.52 -8.15 16.35 5.32 0.09 -8.06 16 19 C -0.07 -0.61 5.87 -104.97 -0.62 -1.22 16 20 C -0.06 -0.46 9.60 -39.19 -0.38 -0.84 16 21 C -0.06 -0.41 9.54 -39.64 -0.38 -0.79 16 22 C -0.03 -0.23 6.86 -79.86 -0.55 -0.78 16 23 N 0.03 0.26 4.45 34.00 0.15 0.41 16 24 O -0.16 -1.71 18.43 -29.46 -0.54 -2.25 16 25 O -0.16 -1.69 18.43 -29.46 -0.54 -2.23 16 26 C -0.06 -0.37 9.54 -39.64 -0.38 -0.74 16 27 C -0.09 -0.51 9.54 -39.18 -0.37 -0.88 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.04 0.61 6.60 -51.93 -0.34 0.27 16 30 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.10 2.30 5.76 -51.93 -0.30 2.00 16 32 H 0.05 0.82 6.66 -51.93 -0.35 0.48 16 33 H 0.27 6.58 8.31 -40.82 -0.34 6.24 16 34 H 0.09 1.20 7.41 -51.93 -0.38 0.82 16 35 H 0.08 1.09 6.54 -51.93 -0.34 0.75 16 36 H 0.08 1.33 8.10 -51.93 -0.42 0.91 16 37 H 0.08 1.40 8.10 -51.92 -0.42 0.98 16 38 H 0.40 2.73 6.51 -40.82 -0.27 2.47 16 39 H 0.16 1.15 7.65 -52.49 -0.40 0.75 16 40 H 0.16 0.86 7.60 -52.49 -0.40 0.46 16 41 H 0.16 0.73 7.60 -52.49 -0.40 0.33 16 42 H 0.15 0.45 6.41 -52.49 -0.34 0.12 16 LS Contribution 366.47 15.07 5.52 5.52 Total: -1.00 -33.64 366.47 -7.85 -41.49 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -4.74 Total: 2.79 kcal Atomic # 6 Polarization: 6.03 SS G_CDS: -2.86 Total: 3.18 kcal Atomic # 7 Polarization: -40.31 SS G_CDS: 0.17 Total: -40.14 kcal Atomic # 8 Polarization: -26.88 SS G_CDS: -0.91 Total: -27.79 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.03 Total: 14.96 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.64 -7.85 -41.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299296349.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.490 kcal (2) G-P(sol) polarization free energy of solvation -33.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds