Wall clock time and date at job start Tue Mar 31 2020 18:15:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46502 * 109.47011 * 2 1 4 4 C 1.37095 * 119.99664 * 264.76975 * 3 2 1 5 5 H 1.08003 * 119.99809 * 138.85390 * 4 3 2 6 6 C 1.38947 * 120.00334 * 318.84998 * 4 3 2 7 7 N 1.31420 * 119.99661 * 341.83048 * 6 4 3 8 8 Si 1.86795 * 120.00406 * 161.83287 * 6 4 3 9 9 H 1.48502 * 109.47419 * 90.00089 * 8 6 4 10 10 H 1.48501 * 109.47216 * 210.00114 * 8 6 4 11 11 H 1.48495 * 109.47051 * 329.99781 * 8 6 4 12 12 C 1.34773 * 120.00125 * 84.76178 * 3 2 1 13 13 O 1.21290 * 119.99772 * 179.97438 * 12 3 2 14 14 C 1.50699 * 120.00049 * 0.02562 * 12 3 2 15 15 C 1.52999 * 109.47414 * 179.97438 * 14 12 3 16 16 N 1.46497 * 109.47369 * 179.97438 * 15 14 12 17 17 C 1.34777 * 119.99817 * 179.97438 * 16 15 14 18 18 O 1.21548 * 120.00198 * 359.97438 * 17 16 15 19 19 C 1.47852 * 119.99808 * 180.02562 * 17 16 15 20 20 C 1.39573 * 120.14469 * 180.02562 * 19 17 16 21 21 C 1.37951 * 119.85338 * 180.02562 * 20 19 17 22 22 C 1.38363 * 120.14634 * 359.97438 * 21 20 19 23 23 N 1.48008 * 119.85428 * 179.97438 * 22 21 20 24 24 O 1.21797 * 120.00473 * 0.02562 * 23 22 21 25 25 O 1.21797 * 120.00053 * 179.72214 * 23 22 21 26 26 C 1.38356 * 120.28926 * 0.25503 * 22 21 20 27 27 C 1.37963 * 120.14637 * 359.48887 * 26 22 21 28 28 H 1.09000 * 109.47172 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47274 * 300.00568 * 1 2 3 30 30 H 1.09006 * 109.47026 * 60.00432 * 1 2 3 31 31 H 1.08999 * 109.47257 * 239.99966 * 2 1 3 32 32 H 1.08993 * 109.46990 * 119.99879 * 2 1 3 33 33 H 0.97005 * 119.99888 * 179.97438 * 7 6 4 34 34 H 1.09003 * 109.47594 * 59.98864 * 14 12 3 35 35 H 1.08999 * 109.46625 * 299.99293 * 14 12 3 36 36 H 1.09003 * 109.47387 * 59.99081 * 15 14 12 37 37 H 1.09008 * 109.46471 * 299.99819 * 15 14 12 38 38 H 0.96996 * 119.99908 * 359.97438 * 16 15 14 39 39 H 1.07997 * 120.07230 * 359.97438 * 20 19 17 40 40 H 1.08002 * 119.93174 * 179.97438 * 21 20 19 41 41 H 1.08001 * 119.92858 * 179.72619 * 26 22 21 42 42 H 1.08001 * 120.07063 * 180.22726 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3488 1.9914 -1.1824 5 1 2.0743 3.0218 -1.3535 6 6 3.0371 1.2842 -2.1605 7 7 3.6792 0.1818 -1.8450 8 14 3.0500 1.9004 -3.9239 9 1 4.2056 2.8119 -4.1214 10 1 3.1660 0.7460 -4.8508 11 1 1.7885 2.6331 -4.2013 12 6 2.1425 2.0521 1.1623 13 8 2.5472 3.1955 1.1622 14 6 1.7796 1.3813 2.4620 15 6 2.0113 2.3538 3.6201 16 7 1.6580 1.7019 4.8835 17 6 1.7830 2.3725 6.0459 18 8 2.1894 3.5180 6.0460 19 6 1.4269 1.7143 7.3211 20 6 1.5547 2.4061 8.5265 21 6 1.2212 1.7860 9.7128 22 6 0.7604 0.4814 9.7094 23 7 0.4050 -0.1778 10.9860 24 8 0.5179 0.4281 12.0365 25 8 -0.0058 -1.3245 10.9856 26 6 0.6359 -0.2115 8.5183 27 6 0.9609 0.3987 7.3245 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 4.1594 -0.3122 -2.5280 34 1 2.4015 0.4969 2.6006 35 1 0.7302 1.0874 2.4384 36 1 1.3897 3.2384 3.4817 37 1 3.0609 2.6474 3.6434 38 1 1.3340 0.7876 4.8835 39 1 1.9146 3.4243 8.5306 40 1 1.3200 2.3200 10.6464 41 1 0.2797 -1.2311 8.5228 42 1 0.8598 -0.1422 6.3951 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299296349.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:34 Heat of formation + Delta-G solvation = -64.778414 kcal Electronic energy + Delta-G solvation = -27391.097174 eV Core-core repulsion = 23146.001343 eV Total energy + Delta-G solvation = -4245.095831 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -43.32138 -41.55708 -40.50291 -39.60526 -37.73874 -37.04840 -36.34581 -34.10313 -33.55804 -32.61177 -31.60550 -31.08187 -28.30920 -27.13549 -25.14980 -24.29210 -23.95786 -23.49345 -21.99207 -20.69172 -20.49804 -19.78919 -19.06828 -18.71463 -18.65911 -17.96471 -17.23171 -17.05205 -16.69209 -16.20236 -16.05477 -15.92253 -15.80148 -15.33825 -14.91301 -14.79489 -14.47993 -14.38431 -14.18931 -14.06609 -13.55455 -13.40516 -13.02547 -12.82208 -12.78778 -12.62310 -12.58243 -12.52068 -12.39315 -12.33467 -12.18743 -12.06073 -11.73252 -11.41108 -10.87859 -10.84488 -10.53172 -10.37907 -10.27981 -9.38235 -8.34442 -6.09894 -1.53654 -0.15179 -0.06393 0.25780 1.37056 1.41275 1.44860 1.52466 1.77138 2.06790 2.31075 2.35430 3.01853 3.09980 3.23912 3.34466 3.37943 3.69254 3.71783 3.83292 4.07430 4.11749 4.20322 4.32035 4.52718 4.57845 4.59410 4.59743 4.68041 4.80957 4.85134 4.92687 4.97935 5.01982 5.10241 5.21184 5.30478 5.37137 5.47115 5.60761 6.24314 6.32065 6.40046 6.56163 6.97882 7.20086 7.48962 8.08386 8.68842 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.027352 B = 0.001907 C = 0.001819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.463400 B =14682.818993 C =15390.720456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.099 3.901 3 N -0.453 5.453 4 C -0.340 4.340 5 H 0.058 0.942 6 C 0.005 3.995 7 N -0.889 5.889 8 Si 0.977 3.023 9 H -0.282 1.282 10 H -0.267 1.267 11 H -0.267 1.267 12 C 0.447 3.553 13 O -0.633 6.633 14 C -0.129 4.129 15 C 0.149 3.851 16 N -0.698 5.698 17 C 0.550 3.450 18 O -0.568 6.568 19 C -0.081 4.081 20 C -0.064 4.064 21 C -0.056 4.056 22 C -0.038 4.038 23 N 0.027 4.973 24 O -0.181 6.181 25 O -0.162 6.162 26 C -0.051 4.051 27 C -0.069 4.069 28 H 0.086 0.914 29 H 0.061 0.939 30 H 0.035 0.965 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.273 0.727 34 H 0.115 0.885 35 H 0.123 0.877 36 H 0.056 0.944 37 H 0.050 0.950 38 H 0.421 0.579 39 H 0.160 0.840 40 H 0.171 0.829 41 H 0.183 0.817 42 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.584 -7.863 18.413 21.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.024 4.024 3 N -0.172 5.172 4 C -0.469 4.469 5 H 0.076 0.924 6 C -0.198 4.198 7 N -0.526 5.526 8 Si 0.800 3.200 9 H -0.208 1.208 10 H -0.192 1.192 11 H -0.192 1.192 12 C 0.237 3.763 13 O -0.520 6.520 14 C -0.169 4.169 15 C 0.024 3.976 16 N -0.351 5.351 17 C 0.337 3.663 18 O -0.448 6.448 19 C -0.085 4.085 20 C -0.083 4.083 21 C -0.075 4.075 22 C -0.121 4.121 23 N 0.543 4.457 24 O -0.393 6.393 25 O -0.380 6.380 26 C -0.070 4.070 27 C -0.088 4.088 28 H 0.105 0.895 29 H 0.080 0.920 30 H 0.054 0.946 31 H 0.093 0.907 32 H 0.095 0.905 33 H 0.082 0.918 34 H 0.133 0.867 35 H 0.141 0.859 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.261 0.739 39 H 0.178 0.822 40 H 0.189 0.811 41 H 0.200 0.800 42 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -7.816 -6.364 17.658 20.332 hybrid contribution 0.218 0.089 -0.692 0.731 sum -7.597 -6.275 16.967 19.620 Atomic orbital electron populations 1.22128 0.95101 1.02633 1.01453 1.21626 0.94085 0.83185 1.03497 1.43750 1.55945 1.13167 1.04367 1.19284 1.36498 0.98034 0.93079 0.92400 1.26086 0.93300 0.96679 1.03719 1.69972 1.29408 1.18065 1.35192 0.85203 0.78639 0.78157 0.77959 1.20821 1.19165 1.19167 1.21157 0.81177 0.87479 0.86516 1.90527 1.52329 1.21287 1.87881 1.21685 1.05612 0.99392 0.90175 1.20759 1.00367 0.95157 0.81275 1.45702 1.66118 1.18246 1.05080 1.18475 0.77910 0.85609 0.84331 1.90841 1.47072 1.19291 1.87614 1.20368 0.99451 0.95556 0.93103 1.21382 0.96119 1.01483 0.89335 1.21146 0.93770 0.91504 1.01104 1.21571 1.11073 0.95828 0.83641 1.43917 0.97727 1.00692 1.03328 1.94558 1.58220 1.65691 1.20834 1.94538 1.46829 1.02509 1.94076 1.21304 0.94791 1.02230 0.88668 1.21696 0.95118 0.92430 0.99540 0.89507 0.91975 0.94589 0.90661 0.90483 0.91785 0.86710 0.85948 0.92560 0.93141 0.73940 0.82247 0.81107 0.79970 0.79421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.43 10.15 71.98 0.73 -3.70 16 2 C 0.10 3.68 5.41 86.38 0.47 4.15 16 3 N -0.45 -21.42 2.50 -635.55 -1.59 -23.01 16 4 C -0.34 -18.61 8.84 84.04 0.74 -17.86 16 5 H 0.06 3.42 7.82 -2.91 -0.02 3.40 16 6 C 0.00 0.26 4.95 84.92 0.42 0.68 16 7 N -0.89 -46.15 11.61 21.66 0.25 -45.90 16 8 Si 0.98 41.36 29.59 68.60 2.03 43.39 16 9 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 10 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16 11 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 12 C 0.45 20.17 7.59 87.66 0.67 20.83 16 13 O -0.63 -35.03 15.89 -3.06 -0.05 -35.08 16 14 C -0.13 -3.62 4.42 29.85 0.13 -3.48 16 15 C 0.15 4.30 4.96 86.38 0.43 4.73 16 16 N -0.70 -12.91 5.51 -465.96 -2.57 -15.48 16 17 C 0.55 11.92 7.77 86.79 0.67 12.59 16 18 O -0.57 -18.10 16.35 -3.87 -0.06 -18.17 16 19 C -0.08 -1.13 5.87 -20.09 -0.12 -1.25 16 20 C -0.06 -0.87 9.60 22.52 0.22 -0.66 16 21 C -0.06 -0.69 9.54 22.23 0.21 -0.48 16 22 C -0.04 -0.52 6.86 36.44 0.25 -0.27 16 23 N 0.03 0.50 4.45 -46.33 -0.21 0.29 16 24 O -0.18 -3.86 18.43 18.89 0.35 -3.51 16 25 O -0.16 -3.25 18.43 18.89 0.35 -2.90 16 26 C -0.05 -0.44 9.54 22.23 0.21 -0.23 16 27 C -0.07 -0.50 9.54 22.53 0.21 -0.28 16 28 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.06 1.52 6.60 -2.39 -0.02 1.50 16 30 H 0.03 1.18 8.14 -2.38 -0.02 1.16 16 31 H 0.08 3.27 5.76 -2.39 -0.01 3.25 16 32 H 0.08 2.36 6.66 -2.39 -0.02 2.35 16 33 H 0.27 13.26 8.31 -92.70 -0.77 12.49 16 34 H 0.11 2.67 7.41 -2.39 -0.02 2.65 16 35 H 0.12 2.56 6.54 -2.39 -0.02 2.55 16 36 H 0.06 1.91 8.10 -2.39 -0.02 1.89 16 37 H 0.05 1.78 8.10 -2.38 -0.02 1.76 16 38 H 0.42 3.75 6.51 -92.71 -0.60 3.15 16 39 H 0.16 2.24 7.65 -2.91 -0.02 2.22 16 40 H 0.17 1.67 7.60 -2.91 -0.02 1.65 16 41 H 0.18 0.83 7.60 -2.91 -0.02 0.81 16 42 H 0.19 -0.03 6.41 -2.91 -0.02 -0.05 16 Total: -1.00 -78.93 366.47 4.23 -74.70 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: 0.48 Total: 10.91 kcal Atomic # 6 Polarization: 9.51 SS G_CDS: 5.25 Total: 14.76 kcal Atomic # 7 Polarization: -79.99 SS G_CDS: -4.11 Total: -84.10 kcal Atomic # 8 Polarization: -60.24 SS G_CDS: 0.58 Total: -59.66 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 2.03 Total: 43.39 kcal Total: -78.93 4.23 -74.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299296349.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.921 kcal (2) G-P(sol) polarization free energy of solvation -78.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds