Wall clock time and date at job start Tue Mar 31 2020 18:03:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 N 1.46499 * 109.46840 * 239.99674 * 2 1 3 5 5 C 1.34781 * 119.99874 * 85.00543 * 4 2 1 6 6 O 1.21554 * 119.99722 * 359.97438 * 5 4 2 7 7 C 1.47846 * 119.99994 * 179.97438 * 5 4 2 8 8 C 1.39594 * 120.14528 * 359.72053 * 7 5 4 9 9 C 1.37936 * 119.85185 * 179.76403 * 8 7 5 10 10 C 1.38375 * 120.14846 * 0.51498 * 9 8 7 11 11 C 1.38342 * 120.29070 * 359.73882 * 10 9 8 12 12 N 1.48014 * 119.92902 * 179.97438 * 11 10 9 13 13 O 1.21795 * 119.99836 * 180.02562 * 12 11 10 14 14 O 1.21793 * 119.99893 * 0.02562 * 12 11 10 15 15 C 1.37980 * 120.14271 * 0.02562 * 11 10 9 16 16 C 1.50699 * 109.47083 * 119.99946 * 2 1 3 17 17 O 1.21277 * 119.99833 * 119.99582 * 16 2 1 18 18 N 1.34773 * 120.00068 * 299.99925 * 16 2 1 19 19 C 1.46501 * 120.00203 * 359.97438 * 18 16 2 20 20 C 1.46500 * 119.99996 * 179.97438 * 18 16 2 21 21 C 1.50698 * 109.47197 * 89.99987 * 20 18 16 22 22 H 1.08004 * 119.99807 * 359.97438 * 21 20 18 23 23 C 1.37873 * 120.00370 * 180.02562 * 21 20 18 24 24 N 1.31516 * 120.00103 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00544 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47070 * 59.99302 * 25 23 21 27 27 H 1.48494 * 109.47448 * 179.97438 * 25 23 21 28 28 H 1.48503 * 109.46637 * 299.99933 * 25 23 21 29 29 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 30 30 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 32 32 H 0.97002 * 120.00410 * 264.99761 * 4 2 1 33 33 H 1.08002 * 120.07445 * 0.02691 * 8 7 5 34 34 H 1.08006 * 119.92753 * 180.25263 * 9 8 7 35 35 H 1.07999 * 119.86045 * 179.75742 * 10 9 8 36 36 H 1.08002 * 120.07299 * 180.02562 * 15 11 10 37 37 H 1.09002 * 109.47088 * 90.00108 * 19 18 16 38 38 H 1.08992 * 109.47451 * 209.99999 * 19 18 16 39 39 H 1.09007 * 109.46824 * 330.00395 * 19 18 16 40 40 H 1.09004 * 109.47343 * 209.99881 * 20 18 16 41 41 H 1.08993 * 109.47349 * 329.99860 * 20 18 16 42 42 H 0.96996 * 120.00759 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1470 -0.0183 -2.3572 6 8 1.8576 1.1610 -2.4118 7 6 2.6403 -0.7152 -3.5642 8 6 2.9791 -2.0680 -3.5033 9 6 3.4341 -2.7134 -4.6343 10 6 3.5651 -2.0203 -5.8248 11 6 3.2361 -0.6781 -5.8906 12 7 3.3799 0.0557 -7.1680 13 8 3.0911 1.2374 -7.2272 14 8 3.7871 -0.5222 -8.1597 15 6 2.7752 -0.0218 -4.7678 16 6 2.0323 -0.7104 1.2305 17 8 2.7295 -1.6965 1.1192 18 7 1.7068 -0.2499 2.4545 19 6 0.8650 0.9415 2.5890 20 6 2.1946 -0.9409 3.6507 21 6 3.5223 -0.3580 4.0611 22 1 3.9593 0.4464 3.4880 23 6 4.1798 -0.8522 5.1676 24 7 3.6481 -1.8321 5.8653 25 14 5.8253 -0.1293 5.6768 26 1 5.6602 1.3164 5.9736 27 1 6.3198 -0.8297 6.8892 28 1 6.8035 -0.2993 4.5726 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 2.2490 -1.6319 -1.1526 33 1 2.8812 -2.6092 -2.5738 34 1 3.6927 -3.7611 -4.5896 35 1 3.9255 -2.5292 -6.7065 36 1 2.5183 1.0259 -4.8205 37 1 -0.1831 0.6440 2.6222 38 1 1.1228 1.4667 3.5086 39 1 1.0289 1.6003 1.7361 40 1 1.4766 -0.8153 4.4612 41 1 2.3153 -2.0021 3.4335 42 1 4.1107 -2.1801 6.6435 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299515632.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:23 Heat of formation + Delta-G solvation = -35.374688 kcal Electronic energy + Delta-G solvation = -28041.919061 eV Core-core repulsion = 23798.098271 eV Total energy + Delta-G solvation = -4243.820790 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.51753 -40.84835 -39.62654 -38.56362 -36.87781 -35.32667 -35.03183 -33.08176 -32.59886 -32.09538 -30.56011 -27.75073 -26.93091 -26.36102 -25.14340 -23.99108 -22.98180 -22.38175 -20.96151 -19.95116 -19.05163 -18.81778 -17.85074 -17.54034 -17.13944 -16.70784 -16.54118 -15.94698 -15.54389 -15.47570 -15.11014 -14.78547 -14.69011 -14.45749 -13.81514 -13.69498 -13.35639 -13.04821 -12.90359 -12.49469 -12.40857 -12.27038 -12.12614 -11.87117 -11.67593 -11.54950 -11.52323 -11.43673 -11.23913 -11.00819 -10.67627 -10.38653 -10.26880 -10.20460 -9.94182 -9.77812 -9.48748 -9.08065 -8.53800 -7.87053 -6.15301 -4.20731 -0.60638 0.08479 0.89350 0.99263 2.23287 2.64504 3.03490 3.12346 3.25259 3.29797 3.33211 3.72660 3.87635 3.92632 4.17896 4.20413 4.31967 4.35321 4.60270 4.75532 4.99388 5.04375 5.11847 5.14019 5.19539 5.33048 5.38247 5.41812 5.57537 5.63858 5.69086 5.78446 5.95472 6.03255 6.10506 6.18302 6.85131 7.18454 7.25674 7.30161 7.34153 7.79354 7.82512 8.09422 8.16384 8.67138 8.85746 9.44773 10.92753 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.017351 B = 0.002348 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.389029 B =11921.393458 C =12485.360458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.122 3.878 3 H 0.113 0.887 4 N -0.698 5.698 5 C 0.562 3.438 6 O -0.528 6.528 7 C -0.126 4.126 8 C -0.034 4.034 9 C -0.120 4.120 10 C -0.034 4.034 11 C -0.053 4.053 12 N 0.029 4.971 13 O -0.153 6.153 14 O -0.159 6.159 15 C 0.002 3.998 16 C 0.503 3.497 17 O -0.541 6.541 18 N -0.591 5.591 19 C 0.075 3.925 20 C 0.246 3.754 21 C -0.531 4.531 22 H 0.057 0.943 23 C 0.063 3.937 24 N -0.894 5.894 25 Si 0.899 3.101 26 H -0.276 1.276 27 H -0.285 1.285 28 H -0.276 1.276 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.087 0.913 32 H 0.409 0.591 33 H 0.152 0.848 34 H 0.157 0.843 35 H 0.159 0.841 36 H 0.167 0.833 37 H 0.053 0.947 38 H 0.078 0.922 39 H 0.062 0.938 40 H 0.036 0.964 41 H 0.045 0.955 42 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.897 -0.858 -19.169 20.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.014 3.986 3 H 0.131 0.869 4 N -0.351 5.351 5 C 0.348 3.652 6 O -0.406 6.406 7 C -0.130 4.130 8 C -0.052 4.052 9 C -0.138 4.138 10 C -0.054 4.054 11 C -0.136 4.136 12 N 0.549 4.451 13 O -0.370 6.370 14 O -0.374 6.374 15 C -0.018 4.018 16 C 0.288 3.712 17 O -0.419 6.419 18 N -0.323 5.323 19 C -0.069 4.069 20 C 0.127 3.873 21 C -0.569 4.569 22 H 0.075 0.925 23 C -0.140 4.140 24 N -0.533 5.533 25 Si 0.726 3.274 26 H -0.202 1.202 27 H -0.211 1.211 28 H -0.202 1.202 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.105 0.895 32 H 0.248 0.752 33 H 0.169 0.831 34 H 0.175 0.825 35 H 0.176 0.824 36 H 0.185 0.815 37 H 0.071 0.929 38 H 0.096 0.904 39 H 0.080 0.920 40 H 0.054 0.946 41 H 0.063 0.937 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.785 -1.015 -18.399 19.313 hybrid contribution 1.136 0.147 0.138 1.154 sum -4.649 -0.869 -18.260 18.863 Atomic orbital electron populations 1.22367 0.92943 1.03329 1.04158 1.20908 0.95675 0.98163 0.83824 0.86917 1.45622 1.66154 1.14917 1.08406 1.17844 0.78214 0.86463 0.82712 1.90821 1.50002 1.14974 1.84777 1.19909 1.04651 0.94405 0.93995 1.21972 0.90408 0.93078 0.99771 1.21231 1.00174 1.01549 0.90857 1.21306 0.92828 0.90895 1.00321 1.21001 1.13606 0.93830 0.85195 1.43542 0.97965 1.01142 1.02420 1.94585 1.52437 0.98590 1.91403 1.94537 1.47189 1.70075 1.25633 1.21093 0.89856 1.02145 0.88734 1.20149 0.81280 0.85255 0.84560 1.90655 1.38253 1.26973 1.86035 1.48086 1.49096 1.28066 1.07009 1.21910 0.93919 0.87973 1.03075 1.19357 0.94424 0.93658 0.79882 1.21361 1.04803 1.19303 1.11455 0.92482 1.24928 0.98008 0.94892 0.96162 1.69910 1.39076 1.25909 1.18358 0.86544 0.83719 0.79138 0.77957 1.20161 1.21096 1.20178 0.91270 0.91861 0.89479 0.75246 0.83059 0.82532 0.82379 0.81511 0.92888 0.90352 0.91970 0.94640 0.93701 0.92541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.90 9.12 37.16 0.34 -1.57 16 2 C 0.12 1.71 2.18 -69.08 -0.15 1.56 16 3 H 0.11 1.62 6.84 -51.93 -0.35 1.27 16 4 N -0.70 -8.72 4.90 -55.88 -0.27 -9.00 16 5 C 0.56 6.98 7.74 -12.33 -0.10 6.89 16 6 O -0.53 -8.03 16.01 5.32 0.09 -7.95 16 7 C -0.13 -1.22 5.87 -104.97 -0.62 -1.84 16 8 C -0.03 -0.23 9.54 -39.19 -0.37 -0.61 16 9 C -0.12 -0.64 10.03 -39.64 -0.40 -1.04 16 10 C -0.03 -0.23 9.55 -39.49 -0.38 -0.61 16 11 C -0.05 -0.51 6.85 -80.00 -0.55 -1.06 16 12 N 0.03 0.34 4.45 33.93 0.15 0.49 16 13 O -0.15 -1.98 18.44 -29.46 -0.54 -2.52 16 14 O -0.16 -1.87 18.44 -29.46 -0.54 -2.42 16 15 C 0.00 0.02 9.10 -39.18 -0.36 -0.34 16 16 C 0.50 9.31 7.14 -10.99 -0.08 9.23 16 17 O -0.54 -11.88 15.42 5.56 0.09 -11.80 16 18 N -0.59 -11.41 2.86 -182.96 -0.52 -11.94 16 19 C 0.07 1.07 8.80 59.85 0.53 1.59 16 20 C 0.25 6.01 5.16 -5.19 -0.03 5.99 16 21 C -0.53 -14.39 9.39 -34.44 -0.32 -14.72 16 22 H 0.06 1.55 7.81 -52.48 -0.41 1.14 16 23 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 24 N -0.89 -25.59 13.29 55.43 0.74 -24.86 16 25 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 16 26 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 27 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 28 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.09 0.89 4.53 -51.93 -0.24 0.65 16 32 H 0.41 4.66 5.83 -40.82 -0.24 4.42 16 33 H 0.15 0.84 6.41 -52.49 -0.34 0.50 16 34 H 0.16 0.37 8.06 -52.48 -0.42 -0.05 16 35 H 0.16 0.78 7.60 -52.49 -0.40 0.38 16 36 H 0.17 1.79 7.20 -52.49 -0.38 1.41 16 37 H 0.05 0.62 6.95 -51.93 -0.36 0.26 16 38 H 0.08 1.16 8.07 -51.93 -0.42 0.74 16 39 H 0.06 0.74 6.01 -51.93 -0.31 0.43 16 40 H 0.04 0.88 8.07 -51.93 -0.42 0.46 16 41 H 0.04 1.23 7.42 -51.93 -0.39 0.85 16 42 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 365.97 15.07 5.52 5.52 Total: -1.00 -34.04 365.97 -7.56 -41.59 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -4.65 Total: 1.55 kcal Atomic # 6 Polarization: 7.69 SS G_CDS: -2.58 Total: 5.11 kcal Atomic # 7 Polarization: -45.39 SS G_CDS: 0.09 Total: -45.30 kcal Atomic # 8 Polarization: -23.77 SS G_CDS: -0.92 Total: -24.68 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -34.04 -7.56 -41.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299515632.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.219 kcal (2) G-P(sol) polarization free energy of solvation -34.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds