Wall clock time and date at job start Tue Mar 31 2020 18:03:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 N 1.46499 * 109.46840 * 239.99674 * 2 1 3 5 5 C 1.34781 * 119.99874 * 85.00543 * 4 2 1 6 6 O 1.21554 * 119.99722 * 359.97438 * 5 4 2 7 7 C 1.47846 * 119.99994 * 179.97438 * 5 4 2 8 8 C 1.39594 * 120.14528 * 359.72053 * 7 5 4 9 9 C 1.37936 * 119.85185 * 179.76403 * 8 7 5 10 10 C 1.38375 * 120.14846 * 0.51498 * 9 8 7 11 11 C 1.38342 * 120.29070 * 359.73882 * 10 9 8 12 12 N 1.48014 * 119.92902 * 179.97438 * 11 10 9 13 13 O 1.21795 * 119.99836 * 180.02562 * 12 11 10 14 14 O 1.21793 * 119.99893 * 0.02562 * 12 11 10 15 15 C 1.37980 * 120.14271 * 0.02562 * 11 10 9 16 16 C 1.50699 * 109.47083 * 119.99946 * 2 1 3 17 17 O 1.21277 * 119.99833 * 119.99582 * 16 2 1 18 18 N 1.34773 * 120.00068 * 299.99925 * 16 2 1 19 19 C 1.46501 * 120.00203 * 359.97438 * 18 16 2 20 20 C 1.46500 * 119.99996 * 179.97438 * 18 16 2 21 21 C 1.50698 * 109.47197 * 89.99987 * 20 18 16 22 22 H 1.08004 * 119.99807 * 359.97438 * 21 20 18 23 23 C 1.37873 * 120.00370 * 180.02562 * 21 20 18 24 24 N 1.31516 * 120.00103 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00544 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47070 * 59.99302 * 25 23 21 27 27 H 1.48494 * 109.47448 * 179.97438 * 25 23 21 28 28 H 1.48503 * 109.46637 * 299.99933 * 25 23 21 29 29 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 30 30 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 32 32 H 0.97002 * 120.00410 * 264.99761 * 4 2 1 33 33 H 1.08002 * 120.07445 * 0.02691 * 8 7 5 34 34 H 1.08006 * 119.92753 * 180.25263 * 9 8 7 35 35 H 1.07999 * 119.86045 * 179.75742 * 10 9 8 36 36 H 1.08002 * 120.07299 * 180.02562 * 15 11 10 37 37 H 1.09002 * 109.47088 * 90.00108 * 19 18 16 38 38 H 1.08992 * 109.47451 * 209.99999 * 19 18 16 39 39 H 1.09007 * 109.46824 * 330.00395 * 19 18 16 40 40 H 1.09004 * 109.47343 * 209.99881 * 20 18 16 41 41 H 1.08993 * 109.47349 * 329.99860 * 20 18 16 42 42 H 0.96996 * 120.00759 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1470 -0.0183 -2.3572 6 8 1.8576 1.1610 -2.4118 7 6 2.6403 -0.7152 -3.5642 8 6 2.9791 -2.0680 -3.5033 9 6 3.4341 -2.7134 -4.6343 10 6 3.5651 -2.0203 -5.8248 11 6 3.2361 -0.6781 -5.8906 12 7 3.3799 0.0557 -7.1680 13 8 3.0911 1.2374 -7.2272 14 8 3.7871 -0.5222 -8.1597 15 6 2.7752 -0.0218 -4.7678 16 6 2.0323 -0.7104 1.2305 17 8 2.7295 -1.6965 1.1192 18 7 1.7068 -0.2499 2.4545 19 6 0.8650 0.9415 2.5890 20 6 2.1946 -0.9409 3.6507 21 6 3.5223 -0.3580 4.0611 22 1 3.9593 0.4464 3.4880 23 6 4.1798 -0.8522 5.1676 24 7 3.6481 -1.8321 5.8653 25 14 5.8253 -0.1293 5.6768 26 1 5.6602 1.3164 5.9736 27 1 6.3198 -0.8297 6.8892 28 1 6.8035 -0.2993 4.5726 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 2.2490 -1.6319 -1.1526 33 1 2.8812 -2.6092 -2.5738 34 1 3.6927 -3.7611 -4.5896 35 1 3.9255 -2.5292 -6.7065 36 1 2.5183 1.0259 -4.8205 37 1 -0.1831 0.6440 2.6222 38 1 1.1228 1.4667 3.5086 39 1 1.0289 1.6003 1.7361 40 1 1.4766 -0.8153 4.4612 41 1 2.3153 -2.0021 3.4335 42 1 4.1107 -2.1801 6.6435 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299515632.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:22 Heat of formation + Delta-G solvation = -57.665244 kcal Electronic energy + Delta-G solvation = -28042.885652 eV Core-core repulsion = 23798.098271 eV Total energy + Delta-G solvation = -4244.787381 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.36326 -41.84461 -40.80003 -39.55459 -37.77044 -36.81607 -36.28762 -34.81064 -33.65219 -32.76524 -31.66303 -29.48044 -27.77577 -27.65783 -26.15428 -25.44471 -23.78813 -23.62696 -21.92904 -20.93922 -20.21417 -19.79039 -18.72670 -18.70661 -18.52838 -17.99411 -17.57277 -17.20295 -16.84223 -16.56230 -16.35234 -16.03584 -15.80681 -15.27939 -15.10252 -14.76766 -14.43700 -14.22744 -14.09481 -13.59258 -13.51743 -13.44858 -13.32798 -13.10094 -12.93690 -12.77215 -12.74286 -12.62108 -12.41837 -12.37703 -12.37343 -12.20549 -11.74192 -11.39608 -10.88007 -10.77215 -10.65276 -10.58756 -10.32813 -9.49860 -8.24394 -6.38492 -1.37033 -0.61645 0.14609 0.21838 1.36685 1.39071 1.41795 1.46784 1.63116 1.64823 2.29206 2.31963 2.43293 3.05835 3.14877 3.29697 3.43038 3.50723 3.57674 3.73825 3.93173 4.01995 4.05732 4.32916 4.43760 4.51719 4.57145 4.67804 4.73943 4.76577 4.83427 4.89298 4.97606 5.01873 5.11871 5.18353 5.23044 5.30158 5.50768 5.77204 6.03296 6.22622 6.37679 6.59122 6.70848 6.87529 7.18712 7.35208 8.82272 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.017351 B = 0.002348 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.389029 B =11921.393458 C =12485.360458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.134 3.866 3 H 0.112 0.888 4 N -0.696 5.696 5 C 0.564 3.436 6 O -0.562 6.562 7 C -0.139 4.139 8 C -0.024 4.024 9 C -0.100 4.100 10 C -0.021 4.021 11 C -0.067 4.067 12 N 0.030 4.970 13 O -0.203 6.203 14 O -0.146 6.146 15 C -0.008 4.008 16 C 0.498 3.502 17 O -0.582 6.582 18 N -0.599 5.599 19 C 0.069 3.931 20 C 0.260 3.740 21 C -0.545 4.545 22 H 0.051 0.949 23 C 0.012 3.988 24 N -0.925 5.925 25 Si 0.962 3.038 26 H -0.264 1.264 27 H -0.278 1.278 28 H -0.278 1.278 29 H 0.077 0.923 30 H 0.067 0.933 31 H 0.100 0.900 32 H 0.415 0.585 33 H 0.169 0.831 34 H 0.200 0.800 35 H 0.184 0.816 36 H 0.149 0.851 37 H 0.085 0.915 38 H 0.070 0.930 39 H 0.088 0.912 40 H 0.029 0.971 41 H 0.006 0.994 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.658 -1.786 -19.942 20.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.026 3.974 3 H 0.129 0.871 4 N -0.350 5.350 5 C 0.352 3.648 6 O -0.442 6.442 7 C -0.143 4.143 8 C -0.042 4.042 9 C -0.118 4.118 10 C -0.040 4.040 11 C -0.150 4.150 12 N 0.547 4.453 13 O -0.409 6.409 14 O -0.368 6.368 15 C -0.028 4.028 16 C 0.285 3.715 17 O -0.463 6.463 18 N -0.329 5.329 19 C -0.073 4.073 20 C 0.139 3.861 21 C -0.583 4.583 22 H 0.069 0.931 23 C -0.188 4.188 24 N -0.564 5.564 25 Si 0.787 3.213 26 H -0.188 1.188 27 H -0.203 1.203 28 H -0.204 1.204 29 H 0.096 0.904 30 H 0.086 0.914 31 H 0.118 0.882 32 H 0.254 0.746 33 H 0.186 0.814 34 H 0.217 0.783 35 H 0.201 0.799 36 H 0.167 0.833 37 H 0.103 0.897 38 H 0.088 0.912 39 H 0.107 0.893 40 H 0.047 0.953 41 H 0.024 0.976 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.602 -1.836 -19.165 20.051 hybrid contribution 1.071 0.293 0.355 1.166 sum -4.531 -1.543 -18.810 19.409 Atomic orbital electron populations 1.22341 0.90413 1.04002 1.05201 1.20783 0.97423 0.97160 0.82050 0.87058 1.45608 1.66198 1.15146 1.08005 1.18183 0.77371 0.86088 0.83186 1.90800 1.51553 1.16474 1.85337 1.19671 1.06500 0.95587 0.92526 1.22249 0.88992 0.91740 1.01255 1.21690 0.97899 1.03076 0.89149 1.21733 0.91027 0.89398 1.01837 1.21110 1.15264 0.94792 0.83815 1.43840 0.97386 1.01034 1.03080 1.94593 1.54761 0.99622 1.91948 1.94495 1.46122 1.69755 1.26416 1.20953 0.90734 1.01656 0.89433 1.20903 0.80365 0.84810 0.85441 1.90621 1.40013 1.28902 1.86771 1.48044 1.49707 1.29244 1.05924 1.22211 0.94715 0.86470 1.03910 1.18821 0.93643 0.91962 0.81676 1.21651 1.05983 1.19179 1.11531 0.93111 1.25768 1.01516 0.95234 0.96243 1.70016 1.40580 1.27010 1.18819 0.85549 0.79222 0.79004 0.77536 1.18843 1.20324 1.20381 0.90426 0.91408 0.88153 0.74553 0.81384 0.78309 0.79911 0.83292 0.89722 0.91164 0.89314 0.95308 0.97556 0.92332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.29 9.12 71.98 0.66 -2.63 16 2 C 0.13 3.61 2.18 44.25 0.10 3.70 16 3 H 0.11 3.08 6.84 -2.39 -0.02 3.07 16 4 N -0.70 -16.76 4.90 -448.97 -2.20 -18.96 16 5 C 0.56 13.76 7.74 86.79 0.67 14.43 16 6 O -0.56 -17.22 16.01 -3.89 -0.06 -17.28 16 7 C -0.14 -2.57 5.87 -20.09 -0.12 -2.68 16 8 C -0.02 -0.27 9.54 22.53 0.21 -0.05 16 9 C -0.10 -0.65 10.03 22.23 0.22 -0.42 16 10 C -0.02 -0.21 9.55 22.33 0.21 0.00 16 11 C -0.07 -1.20 6.85 36.34 0.25 -0.96 16 12 N 0.03 0.70 4.45 -46.55 -0.21 0.50 16 13 O -0.20 -5.56 18.44 18.89 0.35 -5.21 16 14 O -0.15 -3.28 18.44 18.90 0.35 -2.93 16 15 C -0.01 -0.15 9.10 22.53 0.20 0.05 16 16 C 0.50 18.36 7.14 87.66 0.63 18.98 16 17 O -0.58 -25.93 15.42 -3.02 -0.05 -25.98 16 18 N -0.60 -23.03 2.86 -851.15 -2.43 -25.47 16 19 C 0.07 1.85 8.80 127.77 1.12 2.97 16 20 C 0.26 13.05 5.16 85.63 0.44 13.49 16 21 C -0.54 -29.98 9.39 25.60 0.24 -29.74 16 22 H 0.05 2.79 7.81 -2.91 -0.02 2.77 16 23 C 0.01 0.66 5.46 84.65 0.46 1.12 16 24 N -0.92 -53.65 13.29 21.45 0.28 -53.36 16 25 Si 0.96 43.48 29.54 68.60 2.03 45.51 16 26 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 27 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 28 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 29 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.10 1.76 4.53 -2.39 -0.01 1.75 16 32 H 0.42 8.98 5.83 -92.71 -0.54 8.44 16 33 H 0.17 1.34 6.41 -2.91 -0.02 1.32 16 34 H 0.20 -0.28 8.06 -2.91 -0.02 -0.30 16 35 H 0.18 1.00 7.60 -2.91 -0.02 0.98 16 36 H 0.15 3.48 7.20 -2.91 -0.02 3.46 16 37 H 0.08 1.75 6.95 -2.39 -0.02 1.74 16 38 H 0.07 2.01 8.07 -2.39 -0.02 2.00 16 39 H 0.09 1.92 6.01 -2.38 -0.01 1.90 16 40 H 0.03 1.47 8.07 -2.39 -0.02 1.45 16 41 H 0.01 0.36 7.42 -2.39 -0.02 0.35 16 42 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 Total: -1.00 -77.20 365.97 3.91 -73.29 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: 0.55 Total: 11.64 kcal Atomic # 6 Polarization: 12.96 SS G_CDS: 5.31 Total: 18.27 kcal Atomic # 7 Polarization: -92.74 SS G_CDS: -4.56 Total: -97.30 kcal Atomic # 8 Polarization: -52.00 SS G_CDS: 0.59 Total: -51.41 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Total: -77.20 3.91 -73.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299515632.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.621 kcal (2) G-P(sol) polarization free energy of solvation -77.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds