Wall clock time and date at job start Tue Mar 31 2020 18:15:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46501 * 109.46934 * 2 1 4 4 C 1.37093 * 119.99938 * 265.72704 * 3 2 1 5 5 H 1.08004 * 119.99994 * 145.39012 * 4 3 2 6 6 C 1.38945 * 120.00442 * 325.38540 * 4 3 2 7 7 N 1.31418 * 120.00284 * 156.82796 * 6 4 3 8 8 Si 1.86797 * 119.99930 * 336.83158 * 6 4 3 9 9 H 1.48506 * 109.47291 * 95.21409 * 8 6 4 10 10 H 1.48500 * 109.47277 * 215.21050 * 8 6 4 11 11 H 1.48502 * 109.47389 * 335.21306 * 8 6 4 12 12 C 1.34773 * 119.99731 * 85.73224 * 3 2 1 13 13 O 1.21291 * 120.00333 * 5.36353 * 12 3 2 14 14 C 1.50705 * 120.00066 * 185.36664 * 12 3 2 15 15 H 1.08998 * 109.46735 * 46.11016 * 14 12 3 16 16 C 1.52997 * 109.47170 * 286.10794 * 14 12 3 17 17 N 1.46499 * 109.47134 * 166.10644 * 14 12 3 18 18 C 1.34783 * 119.99668 * 205.00201 * 17 14 12 19 19 O 1.21545 * 120.00147 * 0.02562 * 18 17 14 20 20 C 1.47846 * 119.99595 * 180.27625 * 18 17 14 21 21 C 1.39598 * 120.14463 * 359.44094 * 20 18 17 22 22 C 1.37939 * 119.85209 * 179.79036 * 21 20 18 23 23 C 1.38382 * 120.14109 * 0.49306 * 22 21 20 24 24 C 1.38335 * 120.29615 * 359.74263 * 23 22 21 25 25 N 1.48019 * 119.92912 * 180.02562 * 24 23 22 26 26 O 1.21793 * 119.99941 * 180.02562 * 25 24 23 27 27 O 1.21797 * 119.99915 * 0.02562 * 25 24 23 28 28 C 1.37979 * 120.14517 * 0.02562 * 24 23 22 29 29 H 1.09002 * 109.46947 * 304.72527 * 1 2 3 30 30 H 1.08990 * 109.47521 * 64.72927 * 1 2 3 31 31 H 1.09003 * 109.47373 * 184.73405 * 1 2 3 32 32 H 1.09000 * 109.46552 * 240.00507 * 2 1 3 33 33 H 1.08994 * 109.47547 * 120.00442 * 2 1 3 34 34 H 0.96998 * 119.99732 * 179.97438 * 7 6 4 35 35 H 1.09002 * 109.47026 * 52.95554 * 16 14 12 36 36 H 1.08995 * 109.47306 * 172.95380 * 16 14 12 37 37 H 1.09004 * 109.47077 * 292.95911 * 16 14 12 38 38 H 0.97002 * 119.99948 * 24.99987 * 17 14 12 39 39 H 1.08004 * 120.07522 * 0.02562 * 21 20 18 40 40 H 1.07994 * 119.92842 * 180.23803 * 22 21 20 41 41 H 1.08003 * 119.85033 * 179.76718 * 23 22 21 42 42 H 1.08001 * 120.07325 * 180.02562 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3302 1.9980 -1.1840 5 1 2.1487 3.0557 -1.3061 6 6 2.8798 1.2626 -2.2268 7 7 2.7646 1.6897 -3.4643 8 14 3.7824 -0.3334 -1.8700 9 1 2.8490 -1.4770 -2.0320 10 1 4.9170 -0.4827 -2.8163 11 1 4.2989 -0.3095 -0.4778 12 6 2.1610 2.0455 1.1640 13 8 1.9789 1.4708 2.2165 14 6 2.5467 3.5023 1.1578 15 1 1.9421 4.0350 0.4238 16 6 4.0266 3.6366 0.7937 17 7 2.3169 4.0739 2.4870 18 6 2.0973 5.3968 2.6229 19 8 2.0893 6.1153 1.6426 20 6 1.8715 5.9745 3.9649 21 6 1.8736 5.1510 5.0921 22 6 1.6667 5.6971 6.3418 23 6 1.4471 7.0565 6.4784 24 6 1.4389 7.8774 5.3650 25 7 1.2039 9.3305 5.5205 26 8 1.1959 10.0544 4.5411 27 8 1.0184 9.8023 6.6280 28 6 1.6494 7.3446 4.1097 29 1 -0.3633 0.5854 0.8447 30 1 -0.3634 0.4387 -0.9292 31 1 -0.3634 -1.0242 0.0848 32 1 1.8932 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 3.1486 1.1764 -4.1923 35 1 4.2219 3.1024 -0.1361 36 1 4.2754 4.6901 0.6666 37 1 4.6369 3.2127 1.5913 38 1 2.3229 3.5003 3.2692 39 1 2.0407 4.0892 4.9864 40 1 1.6719 5.0617 7.2150 41 1 1.2819 7.4785 7.4587 42 1 1.6431 7.9867 3.2413 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299721456.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:38 Heat of formation + Delta-G solvation = -31.606742 kcal Electronic energy + Delta-G solvation = -28581.111787 eV Core-core repulsion = 24337.454388 eV Total energy + Delta-G solvation = -4243.657400 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.42405 -40.60296 -39.42431 -38.41394 -36.78801 -35.60042 -34.63820 -32.77857 -32.30985 -31.98040 -30.87796 -29.30447 -26.82450 -25.31920 -24.85796 -23.85114 -22.86869 -22.26454 -20.74787 -19.73601 -19.19546 -18.84656 -17.83113 -17.76132 -16.99556 -16.93707 -16.08759 -15.88817 -15.58545 -15.22788 -14.90213 -14.65429 -14.32744 -14.22332 -13.65770 -13.41856 -13.32059 -12.95578 -12.79958 -12.48108 -12.34829 -12.25363 -11.96178 -11.78090 -11.64318 -11.54244 -11.43499 -11.35014 -11.12849 -11.06690 -10.81466 -10.27032 -10.09482 -10.09157 -9.94728 -9.80980 -9.40560 -9.08964 -8.71174 -8.05914 -6.66169 -4.23686 -0.50526 0.21898 0.99211 1.09096 2.41308 2.90040 2.93800 3.08999 3.15317 3.26045 3.43630 3.94893 3.98068 4.04068 4.17821 4.30859 4.36913 4.43747 4.74345 4.79157 5.10950 5.25410 5.45283 5.49873 5.50639 5.64490 5.69840 5.74270 5.77658 5.91631 5.97255 6.12841 6.16405 6.26319 6.30911 6.46404 6.54070 6.72297 6.80534 7.13423 7.39369 7.52296 7.84916 8.03287 8.14881 8.70430 9.09931 9.40382 10.43420 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.022867 B = 0.002603 C = 0.002470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.165793 B =10754.601545 C =11331.070946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.096 3.904 3 N -0.448 5.448 4 C -0.356 4.356 5 H 0.111 0.889 6 C 0.071 3.929 7 N -0.847 5.847 8 Si 0.875 3.125 9 H -0.273 1.273 10 H -0.286 1.286 11 H -0.261 1.261 12 C 0.471 3.529 13 O -0.603 6.603 14 C 0.143 3.857 15 H 0.112 0.888 16 C -0.154 4.154 17 N -0.699 5.699 18 C 0.556 3.444 19 O -0.525 6.525 20 C -0.121 4.121 21 C -0.036 4.036 22 C -0.121 4.121 23 C -0.037 4.037 24 C -0.053 4.053 25 N 0.029 4.971 26 O -0.152 6.152 27 O -0.161 6.161 28 C 0.000 4.000 29 H 0.053 0.947 30 H 0.062 0.938 31 H 0.053 0.947 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.278 0.722 35 H 0.097 0.903 36 H 0.060 0.940 37 H 0.050 0.950 38 H 0.405 0.595 39 H 0.151 0.849 40 H 0.155 0.845 41 H 0.157 0.843 42 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.709 3.685 16.155 16.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.027 4.027 3 N -0.167 5.167 4 C -0.483 4.483 5 H 0.128 0.872 6 C -0.138 4.138 7 N -0.481 5.481 8 Si 0.703 3.297 9 H -0.200 1.200 10 H -0.213 1.213 11 H -0.185 1.185 12 C 0.260 3.740 13 O -0.490 6.490 14 C 0.037 3.963 15 H 0.130 0.870 16 C -0.212 4.212 17 N -0.352 5.352 18 C 0.341 3.659 19 O -0.403 6.403 20 C -0.125 4.125 21 C -0.054 4.054 22 C -0.140 4.140 23 C -0.057 4.057 24 C -0.136 4.136 25 N 0.549 4.451 26 O -0.370 6.370 27 O -0.376 6.376 28 C -0.020 4.020 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.116 0.884 36 H 0.079 0.921 37 H 0.069 0.931 38 H 0.243 0.757 39 H 0.169 0.831 40 H 0.173 0.827 41 H 0.175 0.825 42 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -0.655 3.143 15.607 15.934 hybrid contribution 0.379 -0.774 0.259 0.899 sum -0.277 2.370 15.867 16.045 Atomic orbital electron populations 1.21989 0.96104 1.00861 1.02410 1.21622 0.94723 0.84921 1.01402 1.43687 1.55539 1.11699 1.05809 1.19135 1.43580 0.96997 0.88582 0.87196 1.25275 0.95797 0.98192 0.94534 1.69784 1.39738 1.39866 0.98664 0.86998 0.79975 0.83256 0.79508 1.20035 1.21315 1.18462 1.20104 0.81246 0.88796 0.83864 1.90507 1.57535 1.69716 1.31247 1.20638 0.99161 0.92852 0.83684 0.87031 1.22036 0.93035 1.02596 1.03571 1.45799 1.71032 1.07330 1.11068 1.17842 0.77776 0.82641 0.87690 1.90839 1.50733 1.59702 1.38989 1.20036 1.04807 0.92913 0.94771 1.21967 0.90666 1.01138 0.91678 1.21202 1.00604 0.93686 0.98459 1.21268 0.92560 0.93412 0.98435 1.21001 1.15038 0.80842 0.96717 1.43555 0.97721 1.03260 1.00537 1.94589 1.54320 1.57694 1.30360 1.94527 1.52496 1.77991 1.12613 1.21128 0.89232 0.95136 0.96458 0.92764 0.91931 0.92818 0.91303 0.91253 0.91179 0.88442 0.92116 0.93098 0.75730 0.83127 0.82716 0.82511 0.81478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.79 10.21 37.16 0.38 -2.41 16 2 C 0.10 1.96 4.80 -4.04 -0.02 1.94 16 3 N -0.45 -9.87 2.23 -114.81 -0.26 -10.13 16 4 C -0.36 -8.50 7.54 -14.94 -0.11 -8.62 16 5 H 0.11 2.78 6.76 -52.48 -0.36 2.42 16 6 C 0.07 1.74 5.29 -17.47 -0.09 1.64 16 7 N -0.85 -21.94 13.96 55.50 0.77 -21.16 16 8 Si 0.88 18.97 24.97 -169.99 -4.25 14.73 16 9 H -0.27 -5.71 6.64 56.52 0.38 -5.34 16 10 H -0.29 -6.23 7.11 56.52 0.40 -5.83 16 11 H -0.26 -5.69 7.11 56.52 0.40 -5.29 16 12 C 0.47 9.78 6.94 -10.98 -0.08 9.71 16 13 O -0.60 -12.90 15.47 5.55 0.09 -12.82 16 14 C 0.14 2.64 2.20 -69.08 -0.15 2.49 16 15 H 0.11 2.26 6.51 -51.93 -0.34 1.92 16 16 C -0.15 -2.69 9.36 37.16 0.35 -2.34 16 17 N -0.70 -10.61 4.97 -55.88 -0.28 -10.89 16 18 C 0.56 8.29 7.74 -12.33 -0.10 8.19 16 19 O -0.53 -9.67 16.01 5.33 0.09 -9.59 16 20 C -0.12 -1.37 5.87 -104.97 -0.62 -1.99 16 21 C -0.04 -0.29 9.54 -39.18 -0.37 -0.66 16 22 C -0.12 -0.74 10.03 -39.64 -0.40 -1.14 16 23 C -0.04 -0.28 9.55 -39.49 -0.38 -0.66 16 24 C -0.05 -0.56 6.85 -80.01 -0.55 -1.11 16 25 N 0.03 0.37 4.45 33.93 0.15 0.52 16 26 O -0.15 -2.13 18.44 -29.46 -0.54 -2.68 16 27 O -0.16 -2.03 18.44 -29.46 -0.54 -2.57 16 28 C 0.00 0.00 9.10 -39.19 -0.36 -0.35 16 29 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.07 1.45 3.15 -51.93 -0.16 1.28 16 33 H 0.07 1.38 7.48 -51.93 -0.39 1.00 16 34 H 0.28 6.73 8.31 -40.82 -0.34 6.39 16 35 H 0.10 1.88 6.42 -51.93 -0.33 1.55 16 36 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 37 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.41 5.41 5.75 -40.82 -0.23 5.17 16 39 H 0.15 0.98 6.41 -52.48 -0.34 0.65 16 40 H 0.16 0.45 8.06 -52.49 -0.42 0.03 16 41 H 0.16 0.88 7.60 -52.48 -0.40 0.48 16 42 H 0.17 2.08 7.20 -52.49 -0.38 1.70 16 LS Contribution 359.18 15.07 5.41 5.41 Total: -1.00 -29.21 359.18 -6.47 -35.68 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -4.62 Total: 8.80 kcal Atomic # 6 Polarization: 7.19 SS G_CDS: -2.49 Total: 4.70 kcal Atomic # 7 Polarization: -42.06 SS G_CDS: 0.39 Total: -41.67 kcal Atomic # 8 Polarization: -26.74 SS G_CDS: -0.92 Total: -27.65 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -4.25 Total: 14.73 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -29.21 -6.47 -35.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299721456.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.072 kcal (2) G-P(sol) polarization free energy of solvation -29.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds