Wall clock time and date at job start Tue Mar 31 2020 18:15:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46501 * 109.46934 * 2 1 4 4 C 1.37093 * 119.99938 * 265.72704 * 3 2 1 5 5 H 1.08004 * 119.99994 * 145.39012 * 4 3 2 6 6 C 1.38945 * 120.00442 * 325.38540 * 4 3 2 7 7 N 1.31418 * 120.00284 * 156.82796 * 6 4 3 8 8 Si 1.86797 * 119.99930 * 336.83158 * 6 4 3 9 9 H 1.48506 * 109.47291 * 95.21409 * 8 6 4 10 10 H 1.48500 * 109.47277 * 215.21050 * 8 6 4 11 11 H 1.48502 * 109.47389 * 335.21306 * 8 6 4 12 12 C 1.34773 * 119.99731 * 85.73224 * 3 2 1 13 13 O 1.21291 * 120.00333 * 5.36353 * 12 3 2 14 14 C 1.50705 * 120.00066 * 185.36664 * 12 3 2 15 15 H 1.08998 * 109.46735 * 46.11016 * 14 12 3 16 16 C 1.52997 * 109.47170 * 286.10794 * 14 12 3 17 17 N 1.46499 * 109.47134 * 166.10644 * 14 12 3 18 18 C 1.34783 * 119.99668 * 205.00201 * 17 14 12 19 19 O 1.21545 * 120.00147 * 0.02562 * 18 17 14 20 20 C 1.47846 * 119.99595 * 180.27625 * 18 17 14 21 21 C 1.39598 * 120.14463 * 359.44094 * 20 18 17 22 22 C 1.37939 * 119.85209 * 179.79036 * 21 20 18 23 23 C 1.38382 * 120.14109 * 0.49306 * 22 21 20 24 24 C 1.38335 * 120.29615 * 359.74263 * 23 22 21 25 25 N 1.48019 * 119.92912 * 180.02562 * 24 23 22 26 26 O 1.21793 * 119.99941 * 180.02562 * 25 24 23 27 27 O 1.21797 * 119.99915 * 0.02562 * 25 24 23 28 28 C 1.37979 * 120.14517 * 0.02562 * 24 23 22 29 29 H 1.09002 * 109.46947 * 304.72527 * 1 2 3 30 30 H 1.08990 * 109.47521 * 64.72927 * 1 2 3 31 31 H 1.09003 * 109.47373 * 184.73405 * 1 2 3 32 32 H 1.09000 * 109.46552 * 240.00507 * 2 1 3 33 33 H 1.08994 * 109.47547 * 120.00442 * 2 1 3 34 34 H 0.96998 * 119.99732 * 179.97438 * 7 6 4 35 35 H 1.09002 * 109.47026 * 52.95554 * 16 14 12 36 36 H 1.08995 * 109.47306 * 172.95380 * 16 14 12 37 37 H 1.09004 * 109.47077 * 292.95911 * 16 14 12 38 38 H 0.97002 * 119.99948 * 24.99987 * 17 14 12 39 39 H 1.08004 * 120.07522 * 0.02562 * 21 20 18 40 40 H 1.07994 * 119.92842 * 180.23803 * 22 21 20 41 41 H 1.08003 * 119.85033 * 179.76718 * 23 22 21 42 42 H 1.08001 * 120.07325 * 180.02562 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3302 1.9980 -1.1840 5 1 2.1487 3.0557 -1.3061 6 6 2.8798 1.2626 -2.2268 7 7 2.7646 1.6897 -3.4643 8 14 3.7824 -0.3334 -1.8700 9 1 2.8490 -1.4770 -2.0320 10 1 4.9170 -0.4827 -2.8163 11 1 4.2989 -0.3095 -0.4778 12 6 2.1610 2.0455 1.1640 13 8 1.9789 1.4708 2.2165 14 6 2.5467 3.5023 1.1578 15 1 1.9421 4.0350 0.4238 16 6 4.0266 3.6366 0.7937 17 7 2.3169 4.0739 2.4870 18 6 2.0973 5.3968 2.6229 19 8 2.0893 6.1153 1.6426 20 6 1.8715 5.9745 3.9649 21 6 1.8736 5.1510 5.0921 22 6 1.6667 5.6971 6.3418 23 6 1.4471 7.0565 6.4784 24 6 1.4389 7.8774 5.3650 25 7 1.2039 9.3305 5.5205 26 8 1.1959 10.0544 4.5411 27 8 1.0184 9.8023 6.6280 28 6 1.6494 7.3446 4.1097 29 1 -0.3633 0.5854 0.8447 30 1 -0.3634 0.4387 -0.9292 31 1 -0.3634 -1.0242 0.0848 32 1 1.8932 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 3.1486 1.1764 -4.1923 35 1 4.2219 3.1024 -0.1361 36 1 4.2754 4.6901 0.6666 37 1 4.6369 3.2127 1.5913 38 1 2.3229 3.5003 3.2692 39 1 2.0407 4.0892 4.9864 40 1 1.6719 5.0617 7.2150 41 1 1.2819 7.4785 7.4587 42 1 1.6431 7.9867 3.2413 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299721456.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:37 Heat of formation + Delta-G solvation = -49.572074 kcal Electronic energy + Delta-G solvation = -28581.890823 eV Core-core repulsion = 24337.454388 eV Total energy + Delta-G solvation = -4244.436435 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.35664 -41.77884 -40.81850 -39.56377 -37.76300 -37.24522 -36.12364 -34.16487 -33.74114 -32.76855 -32.23111 -30.74902 -27.71661 -27.07637 -26.10870 -25.22513 -23.70135 -23.56887 -21.89221 -21.11752 -20.59630 -19.81540 -19.22927 -18.70305 -18.36525 -17.82358 -17.62420 -17.21178 -16.98724 -16.47864 -15.99246 -15.85658 -15.82272 -15.27870 -15.13507 -14.87473 -14.65679 -14.26939 -14.11074 -13.90131 -13.54335 -13.45012 -13.13369 -13.11612 -13.08555 -12.76118 -12.69986 -12.68545 -12.47445 -12.37171 -12.36050 -12.01428 -11.63699 -11.35939 -11.11647 -10.85105 -10.65799 -10.53947 -10.24083 -9.84246 -8.54715 -6.13949 -1.35472 -0.59423 0.16332 0.23121 1.18152 1.32154 1.43257 1.46977 1.66424 1.78475 2.15475 2.33639 2.57984 2.91671 3.20474 3.31722 3.52339 3.59895 3.75905 3.83246 4.00781 4.09622 4.19042 4.23162 4.37783 4.45224 4.47282 4.55269 4.71478 4.77670 4.80532 4.83584 4.85770 4.95494 5.03911 5.14297 5.22791 5.30783 5.33625 5.40322 5.99541 6.17226 6.32885 6.38772 6.86119 6.95943 7.30211 7.62236 8.58864 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.022867 B = 0.002603 C = 0.002470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.165793 B =10754.601545 C =11331.070946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.087 3.913 3 N -0.461 5.461 4 C -0.348 4.348 5 H 0.083 0.917 6 C 0.034 3.966 7 N -0.890 5.890 8 Si 0.927 3.073 9 H -0.257 1.257 10 H -0.288 1.288 11 H -0.261 1.261 12 C 0.475 3.525 13 O -0.603 6.603 14 C 0.148 3.852 15 H 0.086 0.914 16 C -0.145 4.145 17 N -0.691 5.691 18 C 0.557 3.443 19 O -0.571 6.571 20 C -0.136 4.136 21 C -0.022 4.022 22 C -0.097 4.097 23 C -0.020 4.020 24 C -0.066 4.066 25 N 0.030 4.970 26 O -0.213 6.213 27 O -0.137 6.137 28 C -0.012 4.012 29 H 0.049 0.951 30 H 0.048 0.952 31 H 0.087 0.913 32 H 0.064 0.936 33 H 0.078 0.922 34 H 0.281 0.719 35 H 0.075 0.925 36 H 0.062 0.938 37 H 0.069 0.931 38 H 0.417 0.583 39 H 0.172 0.828 40 H 0.205 0.795 41 H 0.186 0.814 42 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.651 1.396 20.112 20.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.035 4.035 3 N -0.181 5.181 4 C -0.475 4.475 5 H 0.101 0.899 6 C -0.172 4.172 7 N -0.525 5.525 8 Si 0.753 3.247 9 H -0.183 1.183 10 H -0.215 1.215 11 H -0.185 1.185 12 C 0.264 3.736 13 O -0.490 6.490 14 C 0.040 3.960 15 H 0.104 0.896 16 C -0.203 4.203 17 N -0.345 5.345 18 C 0.344 3.656 19 O -0.451 6.451 20 C -0.140 4.140 21 C -0.040 4.040 22 C -0.114 4.114 23 C -0.039 4.039 24 C -0.149 4.149 25 N 0.546 4.454 26 O -0.416 6.416 27 O -0.362 6.362 28 C -0.032 4.032 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.106 0.894 32 H 0.082 0.918 33 H 0.096 0.904 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.081 0.919 37 H 0.088 0.912 38 H 0.257 0.743 39 H 0.190 0.810 40 H 0.222 0.778 41 H 0.204 0.796 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -0.601 0.871 19.489 19.518 hybrid contribution 0.312 -0.060 -0.747 0.811 sum -0.289 0.811 18.742 18.762 Atomic orbital electron populations 1.21926 0.94335 1.02836 1.01466 1.21795 0.96308 0.83904 1.01479 1.43782 1.56345 1.12545 1.05435 1.18897 1.43261 0.96043 0.89320 0.89934 1.25811 0.96220 1.01025 0.94134 1.69857 1.41391 1.41707 0.99585 0.86162 0.79015 0.80552 0.79001 1.18264 1.21483 1.18474 1.20380 0.80304 0.89388 0.83506 1.90490 1.57361 1.70085 1.31056 1.20377 0.99201 0.91386 0.85003 0.89601 1.21927 0.92708 1.02558 1.03115 1.45617 1.71171 1.07646 1.10059 1.18376 0.76343 0.82041 0.88828 1.90818 1.52616 1.60606 1.41027 1.19659 1.07659 0.92951 0.93761 1.22265 0.88835 1.01698 0.91221 1.21724 0.97577 0.93190 0.98945 1.21764 0.90111 0.93689 0.98349 1.21102 1.16756 0.79624 0.97418 1.43852 0.97165 1.04177 1.00174 1.94609 1.57501 1.58781 1.30742 1.94477 1.50667 1.78573 1.12442 1.20935 0.90516 0.95257 0.96518 0.93171 0.93289 0.89448 0.91812 0.90402 0.90888 0.90572 0.91928 0.91200 0.74313 0.81022 0.77803 0.79630 0.83954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.04 10.21 71.98 0.74 -4.30 16 2 C 0.09 3.43 4.80 86.38 0.41 3.84 16 3 N -0.46 -20.20 2.23 -635.55 -1.42 -21.62 16 4 C -0.35 -17.04 7.54 84.04 0.63 -16.40 16 5 H 0.08 4.43 6.76 -2.91 -0.02 4.41 16 6 C 0.03 1.66 5.29 84.92 0.45 2.11 16 7 N -0.89 -47.32 13.96 21.66 0.30 -47.02 16 8 Si 0.93 38.70 24.97 68.60 1.71 40.41 16 9 H -0.26 -9.97 6.64 99.48 0.66 -9.31 16 10 H -0.29 -12.01 7.11 99.48 0.71 -11.30 16 11 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 12 C 0.48 19.43 6.94 87.66 0.61 20.04 16 13 O -0.60 -24.53 15.47 -3.06 -0.05 -24.58 16 14 C 0.15 5.53 2.20 44.25 0.10 5.63 16 15 H 0.09 3.69 6.51 -2.39 -0.02 3.67 16 16 C -0.14 -5.11 9.36 71.98 0.67 -4.44 16 17 N -0.69 -20.54 4.97 -448.98 -2.23 -22.77 16 18 C 0.56 16.85 7.74 86.79 0.67 17.52 16 19 O -0.57 -22.33 16.01 -3.86 -0.06 -22.40 16 20 C -0.14 -2.95 5.87 -20.09 -0.12 -3.07 16 21 C -0.02 -0.26 9.54 22.53 0.21 -0.05 16 22 C -0.10 -0.63 10.03 22.23 0.22 -0.41 16 23 C -0.02 -0.22 9.55 22.33 0.21 0.00 16 24 C -0.07 -1.31 6.85 36.34 0.25 -1.07 16 25 N 0.03 0.75 4.45 -46.55 -0.21 0.55 16 26 O -0.21 -6.40 18.44 18.90 0.35 -6.05 16 27 O -0.14 -3.22 18.44 18.89 0.35 -2.87 16 28 C -0.01 -0.28 9.10 22.53 0.20 -0.08 16 29 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 32 H 0.06 2.56 3.15 -2.39 -0.01 2.56 16 33 H 0.08 2.91 7.48 -2.39 -0.02 2.89 16 34 H 0.28 13.93 8.31 -92.71 -0.77 13.16 16 35 H 0.08 3.03 6.42 -2.39 -0.02 3.01 16 36 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 37 H 0.07 2.16 8.14 -2.38 -0.02 2.14 16 38 H 0.42 10.19 5.75 -92.71 -0.53 9.66 16 39 H 0.17 1.41 6.41 -2.91 -0.02 1.39 16 40 H 0.21 -0.48 8.06 -2.91 -0.02 -0.51 16 41 H 0.19 1.02 7.60 -2.91 -0.02 1.00 16 42 H 0.14 4.00 7.20 -2.91 -0.02 3.98 16 Total: -1.00 -66.91 359.18 4.53 -62.38 By element: Atomic # 1 Polarization: 24.13 SS G_CDS: 0.51 Total: 24.65 kcal Atomic # 6 Polarization: 14.06 SS G_CDS: 5.27 Total: 19.33 kcal Atomic # 7 Polarization: -87.31 SS G_CDS: -3.56 Total: -90.86 kcal Atomic # 8 Polarization: -56.49 SS G_CDS: 0.59 Total: -55.90 kcal Atomic # 14 Polarization: 38.70 SS G_CDS: 1.71 Total: 40.41 kcal Total: -66.91 4.53 -62.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299721456.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.810 kcal (2) G-P(sol) polarization free energy of solvation -66.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds