Wall clock time and date at job start Tue Mar 31 2020 18:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46496 * 120.00195 * 2 1 4 4 C 1.50702 * 109.47192 * 269.99766 * 3 2 1 5 5 H 1.08006 * 119.99952 * 0.02562 * 4 3 2 6 6 C 1.37871 * 120.00226 * 180.02562 * 4 3 2 7 7 N 1.31515 * 119.99787 * 359.97438 * 6 4 3 8 8 Si 1.86796 * 120.00140 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.47248 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.47179 * 119.99824 * 8 6 4 11 11 H 1.48495 * 109.47395 * 239.99695 * 8 6 4 12 12 C 1.34779 * 119.99593 * 180.02562 * 2 1 3 13 13 O 1.21571 * 120.00190 * 180.02562 * 12 2 1 14 14 N 1.34778 * 119.99819 * 359.97438 * 12 2 1 15 15 C 1.39439 * 119.99803 * 185.29761 * 14 12 2 16 16 C 1.39135 * 119.92294 * 33.69420 * 15 14 12 17 17 C 1.37660 * 120.07342 * 180.23515 * 16 15 14 18 18 C 1.39758 * 119.92409 * 359.46133 * 17 16 15 19 19 C 1.47577 * 120.07296 * 180.29974 * 18 17 16 20 20 O 1.21586 * 120.00189 * 0.02562 * 19 18 17 21 21 N 1.34786 * 119.99758 * 180.02562 * 19 18 17 22 22 C 1.46497 * 119.99800 * 180.02562 * 21 19 18 23 23 C 1.50698 * 109.47073 * 180.02562 * 22 21 19 24 24 O 1.20826 * 120.00230 * 359.97438 * 23 22 21 25 25 O 1.34228 * 119.99930 * 180.02562 * 23 22 21 26 26 C 1.39759 * 119.85275 * 0.28610 * 18 17 16 27 27 C 1.37668 * 119.92229 * 359.97438 * 26 18 17 28 28 H 1.08996 * 109.47590 * 270.00352 * 1 2 3 29 29 H 1.09006 * 109.46593 * 30.00410 * 1 2 3 30 30 H 1.09002 * 109.47671 * 149.99765 * 1 2 3 31 31 H 1.08997 * 109.47240 * 30.00015 * 3 2 1 32 32 H 1.09000 * 109.47015 * 150.00201 * 3 2 1 33 33 H 0.97005 * 119.99888 * 180.02562 * 7 6 4 34 34 H 0.96996 * 120.00688 * 5.30748 * 14 12 2 35 35 H 1.08005 * 119.96387 * 359.97438 * 16 15 14 36 36 H 1.08005 * 120.03825 * 179.74819 * 17 16 15 37 37 H 0.96998 * 119.99945 * 0.02562 * 21 19 18 38 38 H 1.09004 * 109.46881 * 300.00075 * 22 21 19 39 39 H 1.09001 * 109.47720 * 59.99629 * 22 21 19 40 40 H 0.96706 * 117.00010 * 180.02562 * 25 23 22 41 41 H 1.07996 * 120.04006 * 180.02562 * 26 18 17 42 42 H 1.08006 * 119.95705 * 180.02562 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4488 1.7037 -1.4208 5 1 2.0975 1.0961 -2.2418 6 6 3.1271 2.8773 -1.6728 7 7 3.5544 3.6174 -0.6732 8 14 3.4378 3.4168 -3.4339 9 1 2.8588 2.4175 -4.3673 10 1 2.8008 4.7379 -3.6666 11 1 4.9003 3.5244 -3.6680 12 6 2.1388 -1.1673 -0.0005 13 8 3.3546 -1.1674 -0.0001 14 7 1.4648 -2.3344 -0.0005 15 6 2.1575 -3.5395 0.1104 16 6 3.3162 -3.6059 0.8779 17 6 4.0051 -4.7928 0.9857 18 6 3.5333 -5.9346 0.3322 19 6 4.2657 -7.2103 0.4509 20 8 5.2805 -7.2690 1.1181 21 7 3.8096 -8.3104 -0.1803 22 6 4.5363 -9.5769 -0.0621 23 6 3.8238 -10.6410 -0.8566 24 8 2.8125 -10.3694 -1.4593 25 8 4.3122 -11.8907 -0.8938 26 6 2.3663 -5.8656 -0.4336 27 6 1.6851 -4.6742 -0.5415 28 1 -0.3634 0.0001 1.0276 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3634 -0.8899 -0.5139 31 1 1.6085 2.0283 0.5138 32 1 3.1500 1.1383 0.5138 33 1 4.0312 4.4433 -0.8504 34 1 0.4980 -2.3362 -0.0778 35 1 3.6778 -2.7243 1.3863 36 1 4.9067 -4.8427 1.5783 37 1 3.0003 -8.2635 -0.7129 38 1 5.5483 -9.4525 -0.4477 39 1 4.5808 -9.8740 0.9857 40 1 3.8207 -12.5387 -1.4170 41 1 1.9988 -6.7462 -0.9394 42 1 0.7829 -4.6203 -1.1328 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000316681642.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:06 Heat of formation + Delta-G solvation = -110.210279 kcal Electronic energy + Delta-G solvation = -27378.556195 eV Core-core repulsion = 23131.490291 eV Total energy + Delta-G solvation = -4247.065905 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.08436 -40.50639 -39.74862 -38.09424 -36.85558 -35.11585 -34.95926 -34.49469 -32.60798 -31.07233 -30.38610 -28.51857 -27.67619 -25.93614 -24.08036 -22.99130 -22.62656 -21.94531 -20.81010 -19.55801 -18.86624 -18.46514 -17.95893 -17.00631 -16.83436 -16.58477 -16.45845 -16.23727 -15.25725 -15.17158 -15.00946 -14.89441 -14.32889 -14.22265 -13.86389 -13.56800 -13.49535 -13.29900 -13.19218 -12.91863 -12.60741 -12.35422 -12.22557 -12.17846 -11.95672 -11.31888 -11.26231 -11.23489 -10.94077 -10.64007 -10.28458 -10.22359 -10.18163 -9.66589 -9.62530 -9.45350 -8.97673 -8.47330 -8.11675 -7.70068 -6.08142 -4.13025 0.79705 1.39493 1.51205 2.07139 2.67985 2.96303 3.04486 3.27894 3.35981 3.39958 3.62576 3.97591 4.31799 4.42887 4.46031 4.61323 4.71829 4.72214 4.86454 4.90373 5.26189 5.29079 5.38121 5.43157 5.58266 5.76913 5.81756 5.85118 5.94107 6.04280 6.08567 6.29315 6.34402 6.58374 6.71736 7.05724 7.09112 7.21272 7.26388 7.40434 7.56337 7.88875 7.89822 8.17498 8.43961 8.87007 9.10395 9.52452 10.99812 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.020480 B = 0.001987 C = 0.001959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.830849 B =14088.907493 C =14293.159791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.609 5.609 3 C 0.258 3.742 4 C -0.528 4.528 5 H 0.057 0.943 6 C 0.061 3.939 7 N -0.894 5.894 8 Si 0.899 3.101 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.282 1.282 12 C 0.695 3.305 13 O -0.562 6.562 14 N -0.695 5.695 15 C 0.219 3.781 16 C -0.134 4.134 17 C -0.030 4.030 18 C -0.176 4.176 19 C 0.574 3.426 20 O -0.537 6.537 21 N -0.728 5.728 22 C 0.128 3.872 23 C 0.479 3.521 24 O -0.512 6.512 25 O -0.509 6.509 26 C -0.060 4.060 27 C -0.168 4.168 28 H 0.047 0.953 29 H 0.080 0.920 30 H 0.050 0.950 31 H 0.036 0.964 32 H 0.047 0.953 33 H 0.263 0.737 34 H 0.404 0.596 35 H 0.147 0.853 36 H 0.138 0.862 37 H 0.411 0.589 38 H 0.115 0.885 39 H 0.115 0.885 40 H 0.417 0.583 41 H 0.126 0.874 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.164 -26.768 1.978 27.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.344 5.344 3 C 0.139 3.861 4 C -0.567 4.567 5 H 0.076 0.924 6 C -0.141 4.141 7 N -0.533 5.533 8 Si 0.727 3.273 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.208 1.208 12 C 0.397 3.603 13 O -0.437 6.437 14 N -0.343 5.343 15 C 0.121 3.879 16 C -0.155 4.155 17 C -0.050 4.050 18 C -0.180 4.180 19 C 0.363 3.637 20 O -0.414 6.414 21 N -0.386 5.386 22 C 0.003 3.997 23 C 0.321 3.679 24 O -0.400 6.400 25 O -0.321 6.321 26 C -0.079 4.079 27 C -0.189 4.189 28 H 0.066 0.934 29 H 0.099 0.901 30 H 0.068 0.932 31 H 0.054 0.946 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.241 0.759 35 H 0.165 0.835 36 H 0.156 0.844 37 H 0.250 0.750 38 H 0.133 0.867 39 H 0.133 0.867 40 H 0.277 0.723 41 H 0.144 0.856 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -4.539 -26.117 2.570 26.633 hybrid contribution -1.178 -0.037 -1.844 2.189 sum -5.716 -26.155 0.725 26.782 Atomic orbital electron populations 1.21620 0.81528 1.02451 1.00568 1.47548 1.05844 1.06318 1.74729 1.19298 0.92432 0.76722 0.97630 1.21473 1.36609 1.06323 0.92312 0.92429 1.24929 0.95293 0.96372 0.97501 1.69938 1.38308 1.14343 1.30662 0.86429 0.78150 0.78251 0.84500 1.19865 1.20965 1.20813 1.15938 0.85616 0.80053 0.78701 1.90929 1.11187 1.85400 1.56224 1.43056 1.10330 1.03938 1.77022 1.17816 0.92844 0.84863 0.92384 1.21288 0.95876 0.98751 0.99545 1.21106 0.98242 0.90248 0.95357 1.19553 0.98623 0.93557 1.06281 1.18224 0.84112 0.83103 0.78222 1.90793 1.24825 1.85323 1.40459 1.45683 1.30745 1.08076 1.54103 1.20559 0.96471 0.81403 1.01254 1.23280 0.82810 0.83003 0.78837 1.90747 1.24945 1.81530 1.42750 1.84487 1.57460 1.20716 1.69449 1.20951 0.93413 0.97326 0.96244 1.20749 1.03114 0.92404 1.02669 0.93425 0.90138 0.93175 0.94588 0.93537 0.92701 0.75851 0.83537 0.84430 0.74961 0.86708 0.86718 0.72296 0.85628 0.85183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.20 10.25 59.85 0.61 1.81 16 2 N -0.61 -12.41 2.86 -188.74 -0.54 -12.95 16 3 C 0.26 6.57 5.16 -5.19 -0.03 6.55 16 4 C -0.53 -14.75 9.39 -34.44 -0.32 -15.07 16 5 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 6 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 7 N -0.89 -26.21 13.29 55.43 0.74 -25.48 16 8 Si 0.90 21.75 29.54 -169.99 -5.02 16.73 16 9 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 12 C 0.70 14.15 8.00 -86.92 -0.70 13.46 16 13 O -0.56 -13.85 13.61 5.30 0.07 -13.78 16 14 N -0.69 -10.45 5.20 -14.22 -0.07 -10.52 16 15 C 0.22 3.17 6.27 -83.74 -0.53 2.65 16 16 C -0.13 -2.09 8.62 -39.46 -0.34 -2.43 16 17 C -0.03 -0.42 9.58 -39.22 -0.38 -0.79 16 18 C -0.18 -2.17 5.88 -104.95 -0.62 -2.78 16 19 C 0.57 6.84 7.76 -12.45 -0.10 6.75 16 20 O -0.54 -7.92 16.34 5.29 0.09 -7.83 16 21 N -0.73 -6.39 5.48 -62.51 -0.34 -6.73 16 22 C 0.13 0.85 6.27 -5.20 -0.03 0.82 16 23 C 0.48 3.03 8.40 36.00 0.30 3.33 16 24 O -0.51 -4.63 16.43 -18.75 -0.31 -4.94 16 25 O -0.51 -2.04 13.42 -39.25 -0.53 -2.57 16 26 C -0.06 -0.62 9.53 -39.22 -0.37 -1.00 16 27 C -0.17 -1.90 9.94 -39.46 -0.39 -2.30 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.08 1.21 8.07 -51.93 -0.42 0.79 16 30 H 0.05 0.56 6.29 -51.93 -0.33 0.23 16 31 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 32 H 0.05 1.34 7.42 -51.93 -0.39 0.95 16 33 H 0.26 7.28 8.31 -40.82 -0.34 6.95 16 34 H 0.40 4.62 6.51 -40.82 -0.27 4.35 16 35 H 0.15 2.60 6.42 -52.48 -0.34 2.26 16 36 H 0.14 1.87 7.64 -52.48 -0.40 1.47 16 37 H 0.41 3.24 5.46 -40.82 -0.22 3.02 16 38 H 0.12 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.12 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.42 0.00 9.10 45.56 0.41 0.41 16 41 H 0.13 0.93 6.39 -52.49 -0.34 0.60 16 42 H 0.13 1.14 8.06 -52.48 -0.42 0.72 16 LS Contribution 367.96 15.07 5.55 5.55 Total: -1.00 -37.37 367.96 -7.29 -44.66 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -3.93 Total: 5.25 kcal Atomic # 6 Polarization: 15.60 SS G_CDS: -2.98 Total: 12.62 kcal Atomic # 7 Polarization: -55.46 SS G_CDS: -0.22 Total: -55.68 kcal Atomic # 8 Polarization: -28.44 SS G_CDS: -0.68 Total: -29.12 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -37.37 -7.29 -44.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316681642.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.555 kcal (2) G-P(sol) polarization free energy of solvation -37.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds