Wall clock time and date at job start Tue Mar 31 2020 18:43:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46496 * 120.00195 * 2 1 4 4 C 1.50702 * 109.47192 * 269.99766 * 3 2 1 5 5 H 1.08006 * 119.99952 * 0.02562 * 4 3 2 6 6 C 1.37871 * 120.00226 * 180.02562 * 4 3 2 7 7 N 1.31515 * 119.99787 * 359.97438 * 6 4 3 8 8 Si 1.86796 * 120.00140 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.47248 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.47179 * 119.99824 * 8 6 4 11 11 H 1.48495 * 109.47395 * 239.99695 * 8 6 4 12 12 C 1.34779 * 119.99593 * 180.02562 * 2 1 3 13 13 O 1.21571 * 120.00190 * 180.02562 * 12 2 1 14 14 N 1.34778 * 119.99819 * 359.97438 * 12 2 1 15 15 C 1.39439 * 119.99803 * 185.29761 * 14 12 2 16 16 C 1.39135 * 119.92294 * 33.69420 * 15 14 12 17 17 C 1.37660 * 120.07342 * 180.23515 * 16 15 14 18 18 C 1.39758 * 119.92409 * 359.46133 * 17 16 15 19 19 C 1.47577 * 120.07296 * 180.29974 * 18 17 16 20 20 O 1.21586 * 120.00189 * 0.02562 * 19 18 17 21 21 N 1.34786 * 119.99758 * 180.02562 * 19 18 17 22 22 C 1.46497 * 119.99800 * 180.02562 * 21 19 18 23 23 C 1.50698 * 109.47073 * 180.02562 * 22 21 19 24 24 O 1.20826 * 120.00230 * 359.97438 * 23 22 21 25 25 O 1.34228 * 119.99930 * 180.02562 * 23 22 21 26 26 C 1.39759 * 119.85275 * 0.28610 * 18 17 16 27 27 C 1.37668 * 119.92229 * 359.97438 * 26 18 17 28 28 H 1.08996 * 109.47590 * 270.00352 * 1 2 3 29 29 H 1.09006 * 109.46593 * 30.00410 * 1 2 3 30 30 H 1.09002 * 109.47671 * 149.99765 * 1 2 3 31 31 H 1.08997 * 109.47240 * 30.00015 * 3 2 1 32 32 H 1.09000 * 109.47015 * 150.00201 * 3 2 1 33 33 H 0.97005 * 119.99888 * 180.02562 * 7 6 4 34 34 H 0.96996 * 120.00688 * 5.30748 * 14 12 2 35 35 H 1.08005 * 119.96387 * 359.97438 * 16 15 14 36 36 H 1.08005 * 120.03825 * 179.74819 * 17 16 15 37 37 H 0.96998 * 119.99945 * 0.02562 * 21 19 18 38 38 H 1.09004 * 109.46881 * 300.00075 * 22 21 19 39 39 H 1.09001 * 109.47720 * 59.99629 * 22 21 19 40 40 H 0.96706 * 117.00010 * 180.02562 * 25 23 22 41 41 H 1.07996 * 120.04006 * 180.02562 * 26 18 17 42 42 H 1.08006 * 119.95705 * 180.02562 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4488 1.7037 -1.4208 5 1 2.0975 1.0961 -2.2418 6 6 3.1271 2.8773 -1.6728 7 7 3.5544 3.6174 -0.6732 8 14 3.4378 3.4168 -3.4339 9 1 2.8588 2.4175 -4.3673 10 1 2.8008 4.7379 -3.6666 11 1 4.9003 3.5244 -3.6680 12 6 2.1388 -1.1673 -0.0005 13 8 3.3546 -1.1674 -0.0001 14 7 1.4648 -2.3344 -0.0005 15 6 2.1575 -3.5395 0.1104 16 6 3.3162 -3.6059 0.8779 17 6 4.0051 -4.7928 0.9857 18 6 3.5333 -5.9346 0.3322 19 6 4.2657 -7.2103 0.4509 20 8 5.2805 -7.2690 1.1181 21 7 3.8096 -8.3104 -0.1803 22 6 4.5363 -9.5769 -0.0621 23 6 3.8238 -10.6410 -0.8566 24 8 2.8125 -10.3694 -1.4593 25 8 4.3122 -11.8907 -0.8938 26 6 2.3663 -5.8656 -0.4336 27 6 1.6851 -4.6742 -0.5415 28 1 -0.3634 0.0001 1.0276 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3634 -0.8899 -0.5139 31 1 1.6085 2.0283 0.5138 32 1 3.1500 1.1383 0.5138 33 1 4.0312 4.4433 -0.8504 34 1 0.4980 -2.3362 -0.0778 35 1 3.6778 -2.7243 1.3863 36 1 4.9067 -4.8427 1.5783 37 1 3.0003 -8.2635 -0.7129 38 1 5.5483 -9.4525 -0.4477 39 1 4.5808 -9.8740 0.9857 40 1 3.8207 -12.5387 -1.4170 41 1 1.9988 -6.7462 -0.9394 42 1 0.7829 -4.6203 -1.1328 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000316681642.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:05 Heat of formation + Delta-G solvation = -139.115677 kcal Electronic energy + Delta-G solvation = -27379.809628 eV Core-core repulsion = 23131.490291 eV Total energy + Delta-G solvation = -4248.319337 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.89845 -41.54655 -40.74923 -39.24870 -37.31286 -36.73586 -35.91817 -35.74015 -34.63335 -32.07739 -31.46727 -29.79136 -28.99342 -27.39183 -25.55021 -24.14425 -23.92232 -22.61496 -21.76817 -20.95257 -19.64115 -19.30573 -18.99608 -18.68007 -18.32001 -17.36158 -17.30326 -17.04583 -16.78232 -16.57929 -16.04032 -15.94831 -15.74061 -15.50503 -14.89379 -14.82723 -14.55919 -14.27214 -14.14745 -13.96593 -13.84979 -13.70096 -13.52405 -13.45617 -13.12088 -12.82136 -12.63169 -12.54467 -12.30192 -12.20280 -11.83869 -11.72597 -11.45670 -11.29700 -11.02647 -10.64478 -10.40105 -10.01405 -9.59025 -9.07826 -8.22059 -6.36611 -0.24457 0.39166 1.04040 1.36459 1.39270 1.49993 1.52007 1.59900 1.72780 2.19507 2.34993 2.39052 2.87773 3.00904 3.08355 3.66553 3.81591 3.93226 4.14436 4.22501 4.25850 4.30795 4.33199 4.39207 4.52639 4.65349 4.81666 4.95742 4.99408 5.09260 5.11006 5.19604 5.27782 5.30050 5.46650 5.50402 5.53955 5.76627 5.92728 6.04134 6.05555 6.31864 6.72248 6.86060 6.99781 7.03406 7.30247 7.57493 8.84650 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.020480 B = 0.001987 C = 0.001959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.830849 B =14088.907493 C =14293.159791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.617 5.617 3 C 0.274 3.726 4 C -0.541 4.541 5 H 0.053 0.947 6 C 0.007 3.993 7 N -0.927 5.927 8 Si 0.967 3.033 9 H -0.268 1.268 10 H -0.269 1.269 11 H -0.284 1.284 12 C 0.691 3.309 13 O -0.617 6.617 14 N -0.672 5.672 15 C 0.195 3.805 16 C -0.155 4.155 17 C -0.043 4.043 18 C -0.175 4.175 19 C 0.575 3.425 20 O -0.571 6.571 21 N -0.713 5.713 22 C 0.122 3.878 23 C 0.492 3.508 24 O -0.540 6.540 25 O -0.503 6.503 26 C -0.045 4.045 27 C -0.149 4.149 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.090 0.910 31 H 0.031 0.969 32 H 0.000 1.000 33 H 0.267 0.733 34 H 0.424 0.576 35 H 0.111 0.889 36 H 0.128 0.872 37 H 0.418 0.582 38 H 0.123 0.877 39 H 0.126 0.874 40 H 0.436 0.564 41 H 0.167 0.833 42 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.404 -29.472 -0.072 30.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.352 5.352 3 C 0.152 3.848 4 C -0.580 4.580 5 H 0.071 0.929 6 C -0.192 4.192 7 N -0.567 5.567 8 Si 0.792 3.208 9 H -0.192 1.192 10 H -0.194 1.194 11 H -0.210 1.210 12 C 0.393 3.607 13 O -0.496 6.496 14 N -0.323 5.323 15 C 0.097 3.903 16 C -0.176 4.176 17 C -0.062 4.062 18 C -0.179 4.179 19 C 0.364 3.636 20 O -0.451 6.451 21 N -0.370 5.370 22 C -0.002 4.002 23 C 0.335 3.665 24 O -0.430 6.430 25 O -0.317 6.317 26 C -0.064 4.064 27 C -0.170 4.170 28 H 0.091 0.909 29 H 0.093 0.907 30 H 0.108 0.892 31 H 0.049 0.951 32 H 0.019 0.981 33 H 0.076 0.924 34 H 0.265 0.735 35 H 0.129 0.871 36 H 0.146 0.854 37 H 0.258 0.742 38 H 0.140 0.860 39 H 0.144 0.856 40 H 0.299 0.701 41 H 0.184 0.816 42 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -6.873 -28.915 0.506 29.725 hybrid contribution -0.464 0.610 -1.157 1.388 sum -7.337 -28.305 -0.651 29.247 Atomic orbital electron populations 1.21941 0.77701 1.04168 1.02792 1.47388 1.08123 1.04795 1.74881 1.18736 0.91027 0.78959 0.96050 1.21739 1.36724 1.06443 0.93113 0.92881 1.25834 0.94973 0.96506 1.01855 1.70051 1.38938 1.14829 1.32870 0.85374 0.77783 0.78394 0.79273 1.19199 1.19359 1.20978 1.16114 0.85100 0.81211 0.78250 1.90893 1.13847 1.86405 1.58458 1.42606 1.11036 1.02438 1.76225 1.18045 0.93029 0.85515 0.93682 1.21077 0.97375 0.98150 1.00961 1.21033 0.98237 0.90703 0.96259 1.19708 0.99274 0.93124 1.05825 1.18124 0.83632 0.83619 0.78184 1.90783 1.26325 1.85840 1.42158 1.45529 1.30672 1.08029 1.52808 1.20725 0.96606 0.80654 1.02257 1.23026 0.82036 0.83445 0.78007 1.90741 1.26154 1.82100 1.44047 1.84447 1.57483 1.20212 1.69568 1.21356 0.91887 0.98408 0.94781 1.21106 1.03774 0.90918 1.01201 0.90903 0.90711 0.89188 0.95057 0.98148 0.92408 0.73491 0.87060 0.85366 0.74152 0.85962 0.85598 0.70072 0.81615 0.81368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.07 10.25 127.77 1.31 3.38 16 2 N -0.62 -25.53 2.86 -869.32 -2.48 -28.01 16 3 C 0.27 14.57 5.16 85.63 0.44 15.01 16 4 C -0.54 -30.94 9.39 25.60 0.24 -30.70 16 5 H 0.05 3.01 7.81 -2.91 -0.02 2.99 16 6 C 0.01 0.42 5.46 84.65 0.46 0.88 16 7 N -0.93 -55.83 13.29 21.45 0.28 -55.54 16 8 Si 0.97 44.92 29.54 68.60 2.03 46.95 16 9 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 10 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 11 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 12 C 0.69 28.86 8.00 179.05 1.43 30.29 16 13 O -0.62 -32.31 13.61 -3.94 -0.05 -32.37 16 14 N -0.67 -19.55 5.20 -317.18 -1.65 -21.20 16 15 C 0.19 5.47 6.27 38.36 0.24 5.71 16 16 C -0.15 -5.10 8.62 22.35 0.19 -4.91 16 17 C -0.04 -1.25 9.58 22.50 0.22 -1.03 16 18 C -0.18 -4.11 5.88 -20.08 -0.12 -4.23 16 19 C 0.57 12.99 7.76 86.71 0.67 13.67 16 20 O -0.57 -16.78 16.34 -3.99 -0.07 -16.85 16 21 N -0.71 -10.80 5.48 -469.95 -2.57 -13.38 16 22 C 0.12 1.35 6.27 85.63 0.54 1.88 16 23 C 0.49 4.94 8.40 71.24 0.60 5.54 16 24 O -0.54 -8.33 16.43 21.96 0.36 -7.97 16 25 O -0.50 -2.63 13.42 -51.40 -0.69 -3.32 16 26 C -0.05 -0.79 9.53 22.50 0.21 -0.57 16 27 C -0.15 -2.86 9.94 22.35 0.22 -2.64 16 28 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.07 2.14 8.07 -2.38 -0.02 2.13 16 30 H 0.09 1.70 6.29 -2.39 -0.02 1.69 16 31 H 0.03 1.67 8.07 -2.39 -0.02 1.65 16 32 H 0.00 0.02 7.42 -2.39 -0.02 0.01 16 33 H 0.27 15.06 8.31 -92.70 -0.77 14.29 16 34 H 0.42 8.46 6.51 -92.71 -0.60 7.85 16 35 H 0.11 4.42 6.42 -2.91 -0.02 4.40 16 36 H 0.13 3.84 7.64 -2.91 -0.02 3.82 16 37 H 0.42 5.18 5.46 -92.71 -0.51 4.67 16 38 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.13 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.44 -1.28 9.10 -74.05 -0.67 -1.95 16 41 H 0.17 1.58 6.39 -2.91 -0.02 1.57 16 42 H 0.17 1.98 8.06 -2.91 -0.02 1.96 16 Total: -1.00 -86.35 367.96 1.15 -85.19 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: -0.67 Total: 14.20 kcal Atomic # 6 Polarization: 25.63 SS G_CDS: 6.66 Total: 32.29 kcal Atomic # 7 Polarization: -111.70 SS G_CDS: -6.42 Total: -118.13 kcal Atomic # 8 Polarization: -60.05 SS G_CDS: -0.45 Total: -60.50 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -86.35 1.15 -85.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316681642.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.921 kcal (2) G-P(sol) polarization free energy of solvation -86.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds