Wall clock time and date at job start Tue Mar 31 2020 18:35:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 113.99979 * 2 1 4 4 C 1.53000 * 109.47149 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.46915 * 294.99777 * 4 3 2 6 6 C 1.46499 * 119.99869 * 85.00342 * 5 4 3 7 7 C 1.50702 * 109.47746 * 84.99755 * 6 5 4 8 8 H 1.08007 * 119.99460 * 359.97438 * 7 6 5 9 9 C 1.37870 * 120.00176 * 179.97438 * 7 6 5 10 10 N 1.31522 * 119.99667 * 179.97438 * 9 7 6 11 11 Si 1.86792 * 120.00268 * 359.97438 * 9 7 6 12 12 H 1.48510 * 109.46930 * 90.00138 * 11 9 7 13 13 H 1.48502 * 109.47296 * 209.99747 * 11 9 7 14 14 H 1.48498 * 109.47261 * 329.99998 * 11 9 7 15 15 S 1.65600 * 120.00302 * 264.99872 * 5 4 3 16 16 O 1.42101 * 106.40450 * 203.54446 * 15 5 4 17 17 O 1.42105 * 106.40085 * 336.46144 * 15 5 4 18 18 N 1.65595 * 107.21963 * 90.00008 * 15 5 4 19 19 C 1.46499 * 119.99853 * 65.00045 * 18 15 5 20 20 H 1.09001 * 110.85969 * 335.70511 * 19 18 15 21 21 C 1.54634 * 110.97001 * 99.49205 * 19 18 15 22 22 C 1.51386 * 104.14576 * 93.33304 * 21 19 18 23 23 O 1.21282 * 124.93020 * 196.22333 * 22 21 19 24 24 N 1.34413 * 110.12242 * 16.25852 * 22 21 19 25 25 C 1.46504 * 124.34540 * 180.38040 * 24 22 21 26 26 C 1.46759 * 111.30559 * 0.40306 * 24 22 21 27 27 H 1.09002 * 109.47382 * 300.00227 * 1 2 3 28 28 H 1.09001 * 109.46938 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46926 * 60.00334 * 1 2 3 30 30 H 1.09000 * 109.47170 * 299.99544 * 3 2 1 31 31 H 1.09004 * 109.47235 * 59.99983 * 3 2 1 32 32 H 1.08996 * 109.47383 * 54.99643 * 4 3 2 33 33 H 1.09004 * 109.46975 * 175.00021 * 4 3 2 34 34 H 1.09003 * 109.47297 * 204.99641 * 6 5 4 35 35 H 1.08997 * 109.47383 * 324.99698 * 6 5 4 36 36 H 0.96999 * 119.99825 * 179.97438 * 10 9 7 37 37 H 0.97000 * 120.00248 * 245.00157 * 18 15 5 38 38 H 1.08995 * 110.48612 * 212.00350 * 21 19 18 39 39 H 1.09002 * 110.48461 * 334.64397 * 21 19 18 40 40 H 1.08997 * 109.47525 * 270.02360 * 25 24 22 41 41 H 1.08999 * 109.47141 * 30.02508 * 25 24 22 42 42 H 1.09005 * 109.46993 * 150.02809 * 25 24 22 43 43 H 1.09006 * 110.24819 * 223.98317 * 26 24 22 44 44 H 1.08998 * 110.31971 * 102.02363 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9756 0.5645 1.2528 6 6 4.0004 -0.8949 1.3782 7 6 5.2994 -1.4247 0.8276 8 1 6.0330 -0.7424 0.4242 9 6 5.5512 -2.7801 0.8390 10 7 6.6847 -3.2423 0.3580 11 14 4.2827 -3.9600 1.5374 12 1 3.3606 -4.3922 0.4564 13 1 4.9707 -5.1473 2.1052 14 1 3.5083 -3.2787 2.6057 15 16 4.4453 1.5130 2.5263 16 8 5.3006 0.7115 3.3297 17 8 4.8427 2.7600 1.9727 18 7 3.0955 1.8145 3.4370 19 6 2.4144 0.7142 4.1237 20 1 2.6174 -0.2362 3.6302 21 6 2.8165 0.6598 5.6159 22 6 1.7502 1.4746 6.3164 23 8 1.8400 1.9134 7.4434 24 7 0.6892 1.6404 5.5079 25 6 -0.5175 2.3878 5.8705 26 6 0.8947 0.9760 4.2155 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8901 30 1 1.6887 1.8463 -0.8900 31 1 1.6886 1.8464 0.8900 32 1 3.8515 0.5682 -0.8408 33 1 3.9785 2.1765 -0.0889 34 1 3.9118 -1.1709 2.4290 35 1 3.1678 -1.3219 0.8191 36 1 6.8621 -4.1959 0.3663 37 1 2.7558 2.7197 3.5157 38 1 2.8088 -0.3690 5.9757 39 1 3.7988 1.1090 5.7629 40 1 -1.2366 1.7135 6.3356 41 1 -0.2569 3.1807 6.5715 42 1 -0.9570 2.8253 4.9740 43 1 0.5743 1.6266 3.4017 44 1 0.3470 0.0342 4.1827 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330370227.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:29 Heat of formation + Delta-G solvation = -137.342029 kcal Electronic energy + Delta-G solvation = -29410.443132 eV Core-core repulsion = 25297.644658 eV Total energy + Delta-G solvation = -4112.798475 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.139 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.59266 -38.02265 -37.06969 -36.69596 -35.59064 -35.29951 -34.56826 -32.48392 -30.98436 -29.91891 -27.67341 -27.27804 -26.47470 -25.94812 -22.75928 -21.97524 -21.68309 -19.86112 -19.17637 -17.64714 -17.32426 -16.99109 -16.76375 -16.50170 -16.17312 -15.89029 -15.67961 -15.28603 -14.97983 -14.60519 -14.19040 -14.05150 -13.77068 -13.72495 -13.25482 -12.90635 -12.64776 -12.60840 -12.47270 -12.41732 -12.20635 -12.05252 -11.97245 -11.80761 -11.60398 -11.45759 -11.33954 -11.22939 -10.99291 -10.64943 -10.51570 -10.17096 -10.14320 -9.66189 -9.54328 -9.45543 -8.98547 -8.56430 -8.18474 -6.05726 -4.04219 0.99839 2.45912 2.77548 3.24286 3.28394 3.32911 3.37088 3.87412 3.92973 4.14230 4.26347 4.40256 4.62020 4.69989 4.93636 4.97814 5.03842 5.12982 5.14713 5.18939 5.23287 5.28789 5.33384 5.37910 5.41082 5.42219 5.46865 5.58831 5.66007 5.81584 5.94593 6.16961 6.22838 6.36185 6.78965 6.84664 6.90377 7.12443 7.27141 7.38239 7.61953 8.00298 8.50864 8.98877 9.53580 11.08011 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.010977 B = 0.005021 C = 0.004744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2550.079071 B = 5575.197181 C = 5900.531601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.370 6.370 3 C 0.043 3.957 4 C 0.122 3.878 5 N -0.978 5.978 6 C 0.227 3.773 7 C -0.529 4.529 8 H 0.076 0.924 9 C 0.073 3.927 10 N -0.897 5.897 11 Si 0.874 3.126 12 H -0.275 1.275 13 H -0.286 1.286 14 H -0.265 1.265 15 S 2.777 3.223 16 O -0.954 6.954 17 O -0.991 6.991 18 N -1.126 6.126 19 C 0.144 3.856 20 H 0.122 0.878 21 C -0.172 4.172 22 C 0.520 3.480 23 O -0.534 6.534 24 N -0.627 5.627 25 C 0.097 3.903 26 C 0.099 3.901 27 H 0.034 0.966 28 H 0.082 0.918 29 H 0.036 0.964 30 H 0.054 0.946 31 H 0.043 0.957 32 H 0.099 0.901 33 H 0.096 0.904 34 H 0.027 0.973 35 H 0.048 0.952 36 H 0.264 0.736 37 H 0.410 0.590 38 H 0.118 0.882 39 H 0.116 0.884 40 H 0.055 0.945 41 H 0.074 0.926 42 H 0.070 0.930 43 H 0.087 0.913 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.197 9.473 3.138 20.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.289 6.289 3 C -0.036 4.036 4 C -0.005 4.005 5 N -0.818 5.818 6 C 0.104 3.896 7 C -0.568 4.568 8 H 0.094 0.906 9 C -0.129 4.129 10 N -0.535 5.535 11 Si 0.701 3.299 12 H -0.201 1.201 13 H -0.212 1.212 14 H -0.190 1.190 15 S 2.784 3.216 16 O -0.937 6.937 17 O -0.976 6.976 18 N -0.883 5.883 19 C 0.035 3.965 20 H 0.140 0.860 21 C -0.214 4.214 22 C 0.308 3.692 23 O -0.410 6.410 24 N -0.363 5.363 25 C -0.045 4.045 26 C -0.025 4.025 27 H 0.053 0.947 28 H 0.101 0.899 29 H 0.054 0.946 30 H 0.072 0.928 31 H 0.061 0.939 32 H 0.117 0.883 33 H 0.114 0.886 34 H 0.045 0.955 35 H 0.066 0.934 36 H 0.074 0.926 37 H 0.243 0.757 38 H 0.136 0.864 39 H 0.134 0.866 40 H 0.074 0.926 41 H 0.093 0.907 42 H 0.089 0.911 43 H 0.105 0.895 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -17.033 9.523 3.893 19.899 hybrid contribution -1.461 -0.274 0.161 1.495 sum -18.494 9.248 4.055 21.072 Atomic orbital electron populations 1.22717 0.82336 1.02456 0.99228 1.88097 1.18405 1.27222 1.95155 1.23189 0.95623 0.85121 0.99648 1.21314 0.90574 0.99548 0.89044 1.57425 1.81674 1.18117 1.24616 1.19562 0.98868 0.74287 0.96915 1.21366 1.01759 0.93047 1.40605 0.90554 1.24848 0.95262 0.98063 0.94774 1.69900 1.23624 1.13949 1.46028 0.86893 0.81924 0.81202 0.79857 1.20062 1.21161 1.18980 1.02219 0.73243 0.72797 0.73312 1.93658 1.61995 1.69669 1.68345 1.93556 1.80818 1.44408 1.78781 1.56464 1.50442 1.15426 1.65970 1.21605 0.91037 0.91337 0.92541 0.85984 1.22960 1.00197 1.02888 0.95375 1.20998 0.83429 0.79588 0.85140 1.90714 1.80441 1.51751 1.18116 1.48192 1.17753 1.53830 1.16476 1.21524 0.85778 0.96024 1.01157 1.22456 0.95964 0.98677 0.85417 0.94712 0.89900 0.94572 0.92796 0.93915 0.88258 0.88603 0.95519 0.93402 0.92612 0.75720 0.86391 0.86606 0.92628 0.90744 0.91106 0.89504 0.89558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 101.05 1.11 1.39 16 2 O -0.37 -4.97 9.02 -35.23 -0.32 -5.29 16 3 C 0.04 0.51 6.28 37.16 0.23 0.74 16 4 C 0.12 1.84 6.13 -4.04 -0.02 1.82 16 5 N -0.98 -17.67 2.81 -115.66 -0.33 -18.00 16 6 C 0.23 4.89 3.76 -5.19 -0.02 4.88 16 7 C -0.53 -14.39 9.94 -34.44 -0.34 -14.73 16 8 H 0.08 2.30 8.06 -52.48 -0.42 1.88 16 9 C 0.07 2.05 5.47 -17.82 -0.10 1.96 16 10 N -0.90 -27.07 13.96 55.43 0.77 -26.30 16 11 Si 0.87 20.46 27.47 -169.99 -4.67 15.79 16 12 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 13 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 14 H -0.27 -5.69 6.54 56.52 0.37 -5.32 16 15 S 2.78 48.81 6.04 -107.50 -0.65 48.16 16 16 O -0.95 -20.81 16.87 -57.17 -0.96 -21.77 16 17 O -0.99 -18.77 16.69 -57.17 -0.95 -19.72 16 18 N -1.13 -13.85 5.61 -3.50 -0.02 -13.87 16 19 C 0.14 1.63 3.71 -66.30 -0.25 1.38 16 20 H 0.12 1.48 6.35 -51.93 -0.33 1.15 16 21 C -0.17 -2.12 6.59 -26.69 -0.18 -2.30 16 22 C 0.52 6.84 8.02 -10.81 -0.09 6.76 16 23 O -0.53 -9.01 17.60 5.56 0.10 -8.91 16 24 N -0.63 -6.19 3.33 -180.24 -0.60 -6.79 16 25 C 0.10 0.73 10.96 59.85 0.66 1.38 16 26 C 0.10 0.82 7.01 -3.12 -0.02 0.80 16 27 H 0.03 0.26 8.14 -51.93 -0.42 -0.17 16 28 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.10 1.64 8.11 -51.93 -0.42 1.21 16 33 H 0.10 1.34 6.91 -51.93 -0.36 0.98 16 34 H 0.03 0.58 5.27 -51.93 -0.27 0.30 16 35 H 0.05 1.01 6.03 -51.93 -0.31 0.69 16 36 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 37 H 0.41 4.12 8.86 -34.47 -0.31 3.81 16 38 H 0.12 1.29 8.14 -51.93 -0.42 0.86 16 39 H 0.12 1.58 8.09 -51.93 -0.42 1.16 16 40 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 41 H 0.07 0.63 7.93 -51.93 -0.41 0.22 16 42 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.09 0.57 8.09 -51.93 -0.42 0.15 16 44 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 374.32 15.07 5.64 5.64 Total: -1.00 -37.15 374.32 -7.65 -44.80 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -6.65 Total: 2.18 kcal Atomic # 6 Polarization: 3.09 SS G_CDS: 0.99 Total: 4.07 kcal Atomic # 7 Polarization: -64.78 SS G_CDS: -0.17 Total: -64.95 kcal Atomic # 8 Polarization: -53.55 SS G_CDS: -2.14 Total: -55.69 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -4.67 Total: 15.79 kcal Atomic # 16 Polarization: 48.81 SS G_CDS: -0.65 Total: 48.16 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -37.15 -7.65 -44.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330370227.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.545 kcal (2) G-P(sol) polarization free energy of solvation -37.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds