Wall clock time and date at job start Tue Mar 31 2020 18:35:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 113.99979 * 2 1 4 4 C 1.53000 * 109.47149 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.46915 * 294.99777 * 4 3 2 6 6 C 1.46499 * 119.99869 * 85.00342 * 5 4 3 7 7 C 1.50702 * 109.47746 * 84.99755 * 6 5 4 8 8 H 1.08007 * 119.99460 * 359.97438 * 7 6 5 9 9 C 1.37870 * 120.00176 * 179.97438 * 7 6 5 10 10 N 1.31522 * 119.99667 * 179.97438 * 9 7 6 11 11 Si 1.86792 * 120.00268 * 359.97438 * 9 7 6 12 12 H 1.48510 * 109.46930 * 90.00138 * 11 9 7 13 13 H 1.48502 * 109.47296 * 209.99747 * 11 9 7 14 14 H 1.48498 * 109.47261 * 329.99998 * 11 9 7 15 15 S 1.65600 * 120.00302 * 264.99872 * 5 4 3 16 16 O 1.42101 * 106.40450 * 203.54446 * 15 5 4 17 17 O 1.42105 * 106.40085 * 336.46144 * 15 5 4 18 18 N 1.65595 * 107.21963 * 90.00008 * 15 5 4 19 19 C 1.46499 * 119.99853 * 65.00045 * 18 15 5 20 20 H 1.09001 * 110.85969 * 335.70511 * 19 18 15 21 21 C 1.54634 * 110.97001 * 99.49205 * 19 18 15 22 22 C 1.51386 * 104.14576 * 93.33304 * 21 19 18 23 23 O 1.21282 * 124.93020 * 196.22333 * 22 21 19 24 24 N 1.34413 * 110.12242 * 16.25852 * 22 21 19 25 25 C 1.46504 * 124.34540 * 180.38040 * 24 22 21 26 26 C 1.46759 * 111.30559 * 0.40306 * 24 22 21 27 27 H 1.09002 * 109.47382 * 300.00227 * 1 2 3 28 28 H 1.09001 * 109.46938 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46926 * 60.00334 * 1 2 3 30 30 H 1.09000 * 109.47170 * 299.99544 * 3 2 1 31 31 H 1.09004 * 109.47235 * 59.99983 * 3 2 1 32 32 H 1.08996 * 109.47383 * 54.99643 * 4 3 2 33 33 H 1.09004 * 109.46975 * 175.00021 * 4 3 2 34 34 H 1.09003 * 109.47297 * 204.99641 * 6 5 4 35 35 H 1.08997 * 109.47383 * 324.99698 * 6 5 4 36 36 H 0.96999 * 119.99825 * 179.97438 * 10 9 7 37 37 H 0.97000 * 120.00248 * 245.00157 * 18 15 5 38 38 H 1.08995 * 110.48612 * 212.00350 * 21 19 18 39 39 H 1.09002 * 110.48461 * 334.64397 * 21 19 18 40 40 H 1.08997 * 109.47525 * 270.02360 * 25 24 22 41 41 H 1.08999 * 109.47141 * 30.02508 * 25 24 22 42 42 H 1.09005 * 109.46993 * 150.02809 * 25 24 22 43 43 H 1.09006 * 110.24819 * 223.98317 * 26 24 22 44 44 H 1.08998 * 110.31971 * 102.02363 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9756 0.5645 1.2528 6 6 4.0004 -0.8949 1.3782 7 6 5.2994 -1.4247 0.8276 8 1 6.0330 -0.7424 0.4242 9 6 5.5512 -2.7801 0.8390 10 7 6.6847 -3.2423 0.3580 11 14 4.2827 -3.9600 1.5374 12 1 3.3606 -4.3922 0.4564 13 1 4.9707 -5.1473 2.1052 14 1 3.5083 -3.2787 2.6057 15 16 4.4453 1.5130 2.5263 16 8 5.3006 0.7115 3.3297 17 8 4.8427 2.7600 1.9727 18 7 3.0955 1.8145 3.4370 19 6 2.4144 0.7142 4.1237 20 1 2.6174 -0.2362 3.6302 21 6 2.8165 0.6598 5.6159 22 6 1.7502 1.4746 6.3164 23 8 1.8400 1.9134 7.4434 24 7 0.6892 1.6404 5.5079 25 6 -0.5175 2.3878 5.8705 26 6 0.8947 0.9760 4.2155 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8901 30 1 1.6887 1.8463 -0.8900 31 1 1.6886 1.8464 0.8900 32 1 3.8515 0.5682 -0.8408 33 1 3.9785 2.1765 -0.0889 34 1 3.9118 -1.1709 2.4290 35 1 3.1678 -1.3219 0.8191 36 1 6.8621 -4.1959 0.3663 37 1 2.7558 2.7197 3.5157 38 1 2.8088 -0.3690 5.9757 39 1 3.7988 1.1090 5.7629 40 1 -1.2366 1.7135 6.3356 41 1 -0.2569 3.1807 6.5715 42 1 -0.9570 2.8253 4.9740 43 1 0.5743 1.6266 3.4017 44 1 0.3470 0.0342 4.1827 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330370227.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:28 Heat of formation + Delta-G solvation = -169.585334 kcal Electronic energy + Delta-G solvation = -29411.841307 eV Core-core repulsion = 25297.644658 eV Total energy + Delta-G solvation = -4114.196649 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.139 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.49395 -38.99111 -38.37415 -37.93389 -36.97354 -36.82148 -35.49055 -34.49084 -31.91466 -31.29920 -28.77395 -28.46190 -27.21792 -26.84944 -24.22826 -23.18571 -22.84625 -20.82088 -20.36017 -19.19258 -18.69374 -18.44385 -18.03807 -17.45576 -17.23782 -16.94488 -16.59972 -16.36986 -16.24154 -15.65510 -15.58685 -15.21482 -14.96361 -14.57449 -14.42932 -14.24526 -14.05738 -13.72773 -13.57112 -13.32862 -13.30174 -13.21652 -13.15275 -13.05599 -12.94646 -12.72304 -12.63704 -12.54245 -12.34459 -12.06731 -12.00383 -11.67909 -11.62627 -11.18243 -10.69982 -10.59407 -10.34210 -9.77278 -9.69873 -8.20125 -6.24215 -0.40240 1.42949 1.47516 1.48435 1.55826 1.97728 2.04792 2.43755 2.60094 3.07591 3.15752 3.27537 3.38500 3.41096 3.75998 3.91329 4.09686 4.20620 4.27722 4.41623 4.48585 4.51629 4.56166 4.64477 4.71038 4.73429 4.76923 4.83603 4.88845 4.90724 4.98805 5.05732 5.09753 5.21111 5.48403 5.51806 5.60645 5.76505 6.00381 6.06938 6.39522 6.51455 6.79000 7.08035 7.38249 8.97666 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.010977 B = 0.005021 C = 0.004744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2550.079071 B = 5575.197181 C = 5900.531601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.404 6.404 3 C 0.050 3.950 4 C 0.113 3.887 5 N -0.982 5.982 6 C 0.241 3.759 7 C -0.536 4.536 8 H 0.025 0.975 9 C 0.004 3.996 10 N -0.954 5.954 11 Si 0.942 3.058 12 H -0.259 1.259 13 H -0.292 1.292 14 H -0.227 1.227 15 S 2.793 3.207 16 O -1.003 7.003 17 O -1.010 7.010 18 N -1.104 6.104 19 C 0.136 3.864 20 H 0.121 0.879 21 C -0.177 4.177 22 C 0.514 3.486 23 O -0.582 6.582 24 N -0.617 5.617 25 C 0.091 3.909 26 C 0.106 3.894 27 H 0.060 0.940 28 H 0.085 0.915 29 H 0.046 0.954 30 H 0.078 0.922 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.103 0.897 34 H 0.037 0.963 35 H 0.065 0.935 36 H 0.264 0.736 37 H 0.425 0.575 38 H 0.130 0.870 39 H 0.095 0.905 40 H 0.066 0.934 41 H 0.058 0.942 42 H 0.104 0.896 43 H 0.117 0.883 44 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.806 9.768 3.335 25.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.324 6.324 3 C -0.028 4.028 4 C -0.013 4.013 5 N -0.822 5.822 6 C 0.116 3.884 7 C -0.575 4.575 8 H 0.043 0.957 9 C -0.193 4.193 10 N -0.595 5.595 11 Si 0.764 3.236 12 H -0.183 1.183 13 H -0.218 1.218 14 H -0.150 1.150 15 S 2.801 3.199 16 O -0.986 6.986 17 O -0.994 6.994 18 N -0.866 5.866 19 C 0.028 3.972 20 H 0.139 0.861 21 C -0.219 4.219 22 C 0.303 3.697 23 O -0.463 6.463 24 N -0.351 5.351 25 C -0.050 4.050 26 C -0.018 4.018 27 H 0.079 0.921 28 H 0.103 0.897 29 H 0.064 0.936 30 H 0.096 0.904 31 H 0.087 0.913 32 H 0.093 0.907 33 H 0.121 0.879 34 H 0.055 0.945 35 H 0.083 0.917 36 H 0.073 0.927 37 H 0.261 0.739 38 H 0.148 0.852 39 H 0.113 0.887 40 H 0.084 0.916 41 H 0.077 0.923 42 H 0.123 0.877 43 H 0.135 0.865 44 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -21.696 9.873 4.041 24.177 hybrid contribution 0.013 -0.261 0.034 0.263 sum -21.683 9.612 4.075 24.066 Atomic orbital electron populations 1.22916 0.80096 1.03263 1.00993 1.88023 1.20879 1.27965 1.95519 1.23088 0.92437 0.85275 1.02048 1.21511 0.93893 0.99008 0.86918 1.57281 1.82195 1.16678 1.26057 1.19257 0.95942 0.76212 0.96983 1.21770 1.03186 0.92645 1.39940 0.95700 1.25929 0.97711 1.00418 0.95258 1.70096 1.26572 1.14393 1.48459 0.85808 0.79263 0.78115 0.80428 1.18350 1.21815 1.14974 1.01433 0.73572 0.71864 0.73041 1.93599 1.64514 1.70899 1.69587 1.93520 1.81723 1.44858 1.79264 1.55867 1.49183 1.16753 1.64806 1.21803 0.93345 0.90723 0.91313 0.86128 1.22980 0.99189 1.03400 0.96343 1.21092 0.84454 0.79391 0.84776 1.90686 1.81522 1.53861 1.20204 1.48285 1.17437 1.52988 1.16345 1.21746 0.84845 0.95757 1.02610 1.22637 0.93269 1.00675 0.85211 0.92138 0.89690 0.93570 0.90391 0.91315 0.90677 0.87943 0.94535 0.91727 0.92705 0.73913 0.85193 0.88703 0.91553 0.92288 0.87725 0.86464 0.86708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 11.01 113.37 1.25 1.57 16 2 O -0.40 -9.31 9.02 -148.98 -1.34 -10.65 16 3 C 0.05 0.99 6.28 71.98 0.45 1.44 16 4 C 0.11 3.29 6.13 86.38 0.53 3.82 16 5 N -0.98 -34.68 2.81 -519.85 -1.46 -36.14 16 6 C 0.24 10.14 3.76 85.63 0.32 10.46 16 7 C -0.54 -30.08 9.94 25.60 0.25 -29.83 16 8 H 0.02 1.59 8.06 -2.91 -0.02 1.57 16 9 C 0.00 0.21 5.47 84.65 0.46 0.67 16 10 N -0.95 -60.08 13.96 21.45 0.30 -59.78 16 11 Si 0.94 41.41 27.47 68.60 1.88 43.29 16 12 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 13 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 14 H -0.23 -8.52 6.54 99.48 0.65 -7.87 16 15 S 2.79 96.60 6.04 -56.49 -0.34 96.26 16 16 O -1.00 -44.54 16.87 -128.00 -2.16 -46.70 16 17 O -1.01 -37.82 16.69 -128.00 -2.14 -39.96 16 18 N -1.10 -24.37 5.61 -164.99 -0.93 -25.30 16 19 C 0.14 2.65 3.71 46.05 0.17 2.82 16 20 H 0.12 2.48 6.35 -2.39 -0.02 2.46 16 21 C -0.18 -4.10 6.59 30.62 0.20 -3.90 16 22 C 0.51 12.69 8.02 87.93 0.71 13.40 16 23 O -0.58 -19.55 17.60 -3.03 -0.05 -19.60 16 24 N -0.62 -9.87 3.33 -842.76 -2.81 -12.68 16 25 C 0.09 1.01 10.96 127.77 1.40 2.41 16 26 C 0.11 1.18 7.01 86.83 0.61 1.79 16 27 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.05 0.54 8.14 -2.38 -0.02 0.52 16 30 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.07 2.52 8.11 -2.39 -0.02 2.50 16 33 H 0.10 2.79 6.91 -2.39 -0.02 2.77 16 34 H 0.04 1.49 5.27 -2.39 -0.01 1.48 16 35 H 0.06 2.55 6.03 -2.39 -0.01 2.54 16 36 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 37 H 0.42 7.15 8.86 -96.75 -0.86 6.30 16 38 H 0.13 2.64 8.14 -2.39 -0.02 2.62 16 39 H 0.09 2.60 8.09 -2.39 -0.02 2.58 16 40 H 0.07 0.63 8.14 -2.39 -0.02 0.62 16 41 H 0.06 0.87 7.93 -2.39 -0.02 0.85 16 42 H 0.10 0.48 8.14 -2.38 -0.02 0.46 16 43 H 0.12 0.71 8.09 -2.38 -0.02 0.69 16 44 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -86.94 374.32 -2.59 -89.52 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: 0.10 Total: 17.08 kcal Atomic # 6 Polarization: -1.70 SS G_CDS: 6.36 Total: 4.66 kcal Atomic # 7 Polarization: -129.00 SS G_CDS: -4.90 Total: -133.90 kcal Atomic # 8 Polarization: -111.22 SS G_CDS: -5.69 Total: -116.91 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 1.88 Total: 43.29 kcal Atomic # 16 Polarization: 96.60 SS G_CDS: -0.34 Total: 96.26 kcal Total: -86.94 -2.59 -89.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330370227.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.061 kcal (2) G-P(sol) polarization free energy of solvation -86.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds