Wall clock time and date at job start Tue Mar 31 2020 19:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42903 * 114.00014 * 2 1 4 4 C 1.52992 * 109.47163 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.47563 * 64.99619 * 4 3 2 6 6 C 1.46500 * 119.99768 * 84.99831 * 5 4 3 7 7 C 1.50706 * 109.46949 * 275.00438 * 6 5 4 8 8 H 1.07995 * 120.00167 * 359.72205 * 7 6 5 9 9 C 1.37879 * 119.99394 * 179.97438 * 7 6 5 10 10 N 1.31514 * 119.99350 * 179.97438 * 9 7 6 11 11 Si 1.86798 * 120.00608 * 0.02562 * 9 7 6 12 12 H 1.48500 * 109.47353 * 89.99430 * 11 9 7 13 13 H 1.48494 * 109.47031 * 209.99977 * 11 9 7 14 14 H 1.48504 * 109.46680 * 329.99678 * 11 9 7 15 15 S 1.65594 * 120.00146 * 265.00606 * 5 4 3 16 16 O 1.42102 * 106.40753 * 23.53418 * 15 5 4 17 17 O 1.42099 * 106.40296 * 156.45801 * 15 5 4 18 18 N 1.65606 * 107.21631 * 269.99304 * 15 5 4 19 19 C 1.47428 * 125.64754 * 90.02420 * 18 15 5 20 20 C 1.54906 * 104.83323 * 204.09444 * 19 18 15 21 21 C 1.55159 * 101.58076 * 322.99027 * 20 19 18 22 22 C 1.47014 * 125.64935 * 269.71946 * 18 15 5 23 23 H 1.09001 * 109.88562 * 59.55785 * 22 18 15 24 24 C 1.50703 * 109.88224 * 298.39311 * 22 18 15 25 25 N 1.29034 * 119.99946 * 5.00015 * 24 22 18 26 26 O 1.34920 * 119.99863 * 185.00209 * 24 22 18 27 27 H 1.08996 * 109.47305 * 299.99689 * 1 2 3 28 28 H 1.09000 * 109.47252 * 60.00537 * 1 2 3 29 29 H 1.09011 * 109.47019 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.46953 * 59.99913 * 3 2 1 31 31 H 1.08996 * 109.46443 * 300.00038 * 3 2 1 32 32 H 1.09010 * 109.47107 * 304.99713 * 4 3 2 33 33 H 1.08995 * 109.47150 * 184.99887 * 4 3 2 34 34 H 1.09000 * 109.47175 * 155.00464 * 6 5 4 35 35 H 1.09001 * 109.47297 * 34.99971 * 6 5 4 36 36 H 0.97005 * 119.99656 * 180.02562 * 10 9 7 37 37 H 1.09001 * 110.36507 * 322.93260 * 19 18 15 38 38 H 1.09000 * 110.36654 * 85.14401 * 19 18 15 39 39 H 1.08999 * 111.00189 * 81.06601 * 20 19 18 40 40 H 1.09001 * 111.00662 * 204.91736 * 20 19 18 41 41 H 1.08997 * 110.71858 * 153.86429 * 21 20 19 42 42 H 1.08998 * 110.72208 * 277.14057 * 21 20 19 43 43 H 0.97001 * 120.00030 * 180.02562 * 25 24 22 44 44 H 0.96700 * 113.99779 * 180.02562 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.1809 1.3889 -2.4461 7 6 2.8683 1.5680 -3.1647 8 1 1.9720 1.1093 -2.7742 9 6 2.8130 2.3130 -4.3235 10 7 1.6676 2.4688 -4.9508 11 14 4.3648 3.0998 -5.0033 12 1 5.0306 2.1558 -5.9364 13 1 4.0108 4.3462 -5.7288 14 1 5.2866 3.4230 -3.8847 15 16 4.2414 -1.0688 -1.3190 16 8 3.4687 -1.6439 -0.2743 17 8 4.1044 -1.4425 -2.6831 18 7 5.8286 -1.3238 -0.9214 19 6 6.3474 -1.5530 0.4394 20 6 7.8331 -1.1193 0.3757 21 6 8.2369 -1.5984 -1.0437 22 6 6.9529 -1.3653 -1.8678 23 1 7.0240 -0.4173 -2.4010 24 6 6.7572 -2.4940 -2.8470 25 7 5.6678 -3.1851 -2.8255 26 8 7.7211 -2.7818 -3.7461 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3634 -1.0278 0.0005 30 1 1.6886 1.8463 0.8899 31 1 1.6886 1.8463 -0.8900 32 1 3.8515 0.5682 0.8410 33 1 3.9785 2.1765 0.0889 34 1 4.8938 0.8982 -3.1087 35 1 4.5698 2.3637 -2.1518 36 1 1.6287 2.9927 -5.7663 37 1 5.8044 -0.9419 1.1603 38 1 6.2694 -2.6079 0.7024 39 1 7.9283 -0.0371 0.4646 40 1 8.4212 -1.6257 1.1410 41 1 9.0613 -1.0007 -1.4325 42 1 8.4976 -2.6567 -1.0339 43 1 5.5419 -3.9118 -3.4556 44 1 7.5051 -3.5206 -4.3314 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330372954.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:07 Heat of formation + Delta-G solvation = -112.682301 kcal Electronic energy + Delta-G solvation = -29927.222570 eV Core-core repulsion = 25815.493422 eV Total energy + Delta-G solvation = -4111.729149 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.139 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.54908 -37.70353 -37.46804 -36.18908 -35.32124 -34.68109 -32.81283 -32.39414 -30.70347 -29.55889 -29.34261 -27.09233 -25.53997 -23.61602 -22.32612 -21.62812 -21.39913 -20.80133 -18.29581 -18.17808 -17.16872 -17.01914 -16.52934 -15.97823 -15.95851 -15.18089 -14.96634 -14.80431 -14.46977 -14.32679 -14.15783 -13.64761 -13.55811 -13.22711 -13.13854 -12.64532 -12.46579 -12.32434 -12.25169 -11.81155 -11.60723 -11.37578 -11.26110 -11.10214 -11.02129 -10.94962 -10.92953 -10.83069 -10.65525 -10.45055 -10.32413 -10.11142 -9.65704 -9.45092 -9.27848 -8.91518 -8.88187 -8.54499 -8.02190 -6.04275 -4.01891 1.35851 2.55808 3.27729 3.32710 3.34979 3.37812 3.72374 4.29877 4.40829 4.41019 4.49897 4.61194 4.81783 4.94733 5.17966 5.23659 5.33133 5.44933 5.49033 5.65741 5.67674 5.70504 5.72564 5.76967 5.82643 5.91081 5.98636 6.10155 6.10577 6.18901 6.23053 6.27770 6.40965 6.58409 6.64276 6.79512 6.83537 7.17866 7.54130 7.63824 7.88551 8.50149 8.55139 9.03915 9.55636 11.09078 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.010260 B = 0.006493 C = 0.004866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2728.377271 B = 4311.230934 C = 5752.250797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.369 6.369 3 C 0.032 3.968 4 C 0.142 3.858 5 N -0.989 5.989 6 C 0.228 3.772 7 C -0.523 4.523 8 H 0.082 0.918 9 C 0.072 3.928 10 N -0.897 5.897 11 Si 0.869 3.131 12 H -0.275 1.275 13 H -0.285 1.285 14 H -0.265 1.265 15 S 2.798 3.202 16 O -0.965 6.965 17 O -0.935 6.935 18 N -1.002 6.002 19 C 0.122 3.878 20 C -0.131 4.131 21 C -0.114 4.114 22 C 0.226 3.774 23 H 0.101 0.899 24 C 0.332 3.668 25 N -0.699 5.699 26 O -0.531 6.531 27 H 0.030 0.970 28 H 0.042 0.958 29 H 0.077 0.923 30 H 0.041 0.959 31 H 0.080 0.920 32 H 0.070 0.930 33 H 0.084 0.916 34 H 0.024 0.976 35 H 0.030 0.970 36 H 0.263 0.737 37 H 0.076 0.924 38 H 0.066 0.934 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.088 0.912 42 H 0.078 0.922 43 H 0.339 0.661 44 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.204 -5.757 10.998 18.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.287 6.287 3 C -0.046 4.046 4 C 0.015 3.985 5 N -0.829 5.829 6 C 0.104 3.896 7 C -0.562 4.562 8 H 0.100 0.900 9 C -0.130 4.130 10 N -0.535 5.535 11 Si 0.696 3.304 12 H -0.200 1.200 13 H -0.211 1.211 14 H -0.189 1.189 15 S 2.807 3.193 16 O -0.949 6.949 17 O -0.918 6.918 18 N -0.838 5.838 19 C -0.004 4.004 20 C -0.170 4.170 21 C -0.154 4.154 22 C 0.116 3.884 23 H 0.119 0.881 24 C 0.098 3.902 25 N -0.342 5.342 26 O -0.326 6.326 27 H 0.049 0.951 28 H 0.060 0.940 29 H 0.096 0.904 30 H 0.059 0.941 31 H 0.098 0.902 32 H 0.088 0.912 33 H 0.102 0.898 34 H 0.042 0.958 35 H 0.048 0.952 36 H 0.073 0.927 37 H 0.094 0.906 38 H 0.084 0.916 39 H 0.098 0.902 40 H 0.101 0.899 41 H 0.107 0.893 42 H 0.096 0.904 43 H 0.158 0.842 44 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 12.117 -5.939 11.356 17.636 hybrid contribution 0.882 0.083 -1.798 2.005 sum 12.999 -5.856 9.558 17.164 Atomic orbital electron populations 1.22654 0.82420 1.01953 0.99360 1.88078 1.18438 1.26919 1.95255 1.23172 0.94668 0.85783 1.00997 1.21037 0.92908 0.99045 0.85531 1.57811 1.80486 1.27701 1.16929 1.19392 0.97781 0.90511 0.81913 1.21445 0.94631 1.31894 1.08239 0.89992 1.24881 0.95776 0.96089 0.96302 1.69899 1.24760 1.40625 1.18260 0.86973 0.84294 0.79270 0.79882 1.20023 1.21104 1.18937 1.01837 0.71269 0.72381 0.73814 1.93574 1.65982 1.76116 1.59225 1.93617 1.83678 1.80602 1.33942 1.59608 1.24791 1.86892 1.12545 1.21912 0.94056 1.00991 0.83408 1.22840 0.95616 1.02018 0.96517 1.22604 0.95312 1.02701 0.94753 1.19615 0.87851 0.93188 0.87719 0.88114 1.24846 0.82580 0.94870 0.87943 1.69459 1.19685 1.12571 1.32484 1.84754 1.46187 1.54528 1.47096 0.95120 0.93968 0.90406 0.94101 0.90208 0.91186 0.89771 0.95790 0.95224 0.92692 0.90594 0.91585 0.90172 0.89912 0.89344 0.90373 0.84227 0.75220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 11.01 101.05 1.11 1.70 16 2 O -0.37 -7.82 8.76 -54.44 -0.48 -8.30 16 3 C 0.03 0.61 6.03 37.15 0.22 0.83 16 4 C 0.14 2.48 5.84 -4.04 -0.02 2.46 16 5 N -0.99 -20.63 2.80 -115.66 -0.32 -20.96 16 6 C 0.23 5.34 4.19 -5.19 -0.02 5.32 16 7 C -0.52 -14.77 8.93 -34.44 -0.31 -15.08 16 8 H 0.08 2.56 7.03 -52.49 -0.37 2.19 16 9 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 10 N -0.90 -27.50 13.96 55.43 0.77 -26.73 16 11 Si 0.87 21.05 27.47 -169.99 -4.67 16.39 16 12 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 13 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 14 H -0.26 -5.88 6.54 56.52 0.37 -5.51 16 15 S 2.80 59.58 5.79 -107.50 -0.62 58.96 16 16 O -0.97 -22.11 14.87 -65.29 -0.97 -23.08 16 17 O -0.94 -23.39 13.59 -57.17 -0.78 -24.17 16 18 N -1.00 -15.99 3.19 -105.63 -0.34 -16.33 16 19 C 0.12 1.47 6.98 -2.53 -0.02 1.45 16 20 C -0.13 -1.12 7.09 -24.58 -0.17 -1.29 16 21 C -0.11 -1.10 6.40 -24.89 -0.16 -1.26 16 22 C 0.23 3.18 3.58 -68.10 -0.24 2.94 16 23 H 0.10 1.41 8.14 -51.93 -0.42 0.99 16 24 C 0.33 5.00 7.07 -13.45 -0.10 4.91 16 25 N -0.70 -12.09 10.14 32.47 0.33 -11.76 16 26 O -0.53 -6.39 13.48 -16.48 -0.22 -6.61 16 27 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.08 1.27 8.14 -51.92 -0.42 0.85 16 30 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.08 1.73 6.25 -51.93 -0.32 1.41 16 32 H 0.07 1.09 7.61 -51.92 -0.40 0.69 16 33 H 0.08 1.24 8.00 -51.93 -0.42 0.82 16 34 H 0.02 0.58 7.04 -51.93 -0.37 0.21 16 35 H 0.03 0.65 7.06 -51.93 -0.37 0.28 16 36 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 37 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.08 0.72 7.83 -51.93 -0.41 0.31 16 43 H 0.34 5.02 8.56 -40.82 -0.35 4.67 16 44 H 0.39 3.15 8.70 45.56 0.40 3.55 16 LS Contribution 365.21 15.07 5.50 5.50 Total: -1.00 -38.64 365.21 -7.59 -46.22 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: -5.99 Total: 6.91 kcal Atomic # 6 Polarization: 3.76 SS G_CDS: 0.20 Total: 3.96 kcal Atomic # 7 Polarization: -76.22 SS G_CDS: 0.44 Total: -75.78 kcal Atomic # 8 Polarization: -59.71 SS G_CDS: -2.45 Total: -62.16 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.67 Total: 16.39 kcal Atomic # 16 Polarization: 59.58 SS G_CDS: -0.62 Total: 58.96 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -38.64 -7.59 -46.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330372954.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.458 kcal (2) G-P(sol) polarization free energy of solvation -38.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds