Wall clock time and date at job start Tue Mar 31 2020 19:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42903 * 114.00014 * 2 1 4 4 C 1.52992 * 109.47163 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.47563 * 64.99619 * 4 3 2 6 6 C 1.46500 * 119.99768 * 84.99831 * 5 4 3 7 7 C 1.50706 * 109.46949 * 275.00438 * 6 5 4 8 8 H 1.07995 * 120.00167 * 359.72205 * 7 6 5 9 9 C 1.37879 * 119.99394 * 179.97438 * 7 6 5 10 10 N 1.31514 * 119.99350 * 179.97438 * 9 7 6 11 11 Si 1.86798 * 120.00608 * 0.02562 * 9 7 6 12 12 H 1.48500 * 109.47353 * 89.99430 * 11 9 7 13 13 H 1.48494 * 109.47031 * 209.99977 * 11 9 7 14 14 H 1.48504 * 109.46680 * 329.99678 * 11 9 7 15 15 S 1.65594 * 120.00146 * 265.00606 * 5 4 3 16 16 O 1.42102 * 106.40753 * 23.53418 * 15 5 4 17 17 O 1.42099 * 106.40296 * 156.45801 * 15 5 4 18 18 N 1.65606 * 107.21631 * 269.99304 * 15 5 4 19 19 C 1.47428 * 125.64754 * 90.02420 * 18 15 5 20 20 C 1.54906 * 104.83323 * 204.09444 * 19 18 15 21 21 C 1.55159 * 101.58076 * 322.99027 * 20 19 18 22 22 C 1.47014 * 125.64935 * 269.71946 * 18 15 5 23 23 H 1.09001 * 109.88562 * 59.55785 * 22 18 15 24 24 C 1.50703 * 109.88224 * 298.39311 * 22 18 15 25 25 N 1.29034 * 119.99946 * 5.00015 * 24 22 18 26 26 O 1.34920 * 119.99863 * 185.00209 * 24 22 18 27 27 H 1.08996 * 109.47305 * 299.99689 * 1 2 3 28 28 H 1.09000 * 109.47252 * 60.00537 * 1 2 3 29 29 H 1.09011 * 109.47019 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.46953 * 59.99913 * 3 2 1 31 31 H 1.08996 * 109.46443 * 300.00038 * 3 2 1 32 32 H 1.09010 * 109.47107 * 304.99713 * 4 3 2 33 33 H 1.08995 * 109.47150 * 184.99887 * 4 3 2 34 34 H 1.09000 * 109.47175 * 155.00464 * 6 5 4 35 35 H 1.09001 * 109.47297 * 34.99971 * 6 5 4 36 36 H 0.97005 * 119.99656 * 180.02562 * 10 9 7 37 37 H 1.09001 * 110.36507 * 322.93260 * 19 18 15 38 38 H 1.09000 * 110.36654 * 85.14401 * 19 18 15 39 39 H 1.08999 * 111.00189 * 81.06601 * 20 19 18 40 40 H 1.09001 * 111.00662 * 204.91736 * 20 19 18 41 41 H 1.08997 * 110.71858 * 153.86429 * 21 20 19 42 42 H 1.08998 * 110.72208 * 277.14057 * 21 20 19 43 43 H 0.97001 * 120.00030 * 180.02562 * 25 24 22 44 44 H 0.96700 * 113.99779 * 180.02562 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.1809 1.3889 -2.4461 7 6 2.8683 1.5680 -3.1647 8 1 1.9720 1.1093 -2.7742 9 6 2.8130 2.3130 -4.3235 10 7 1.6676 2.4688 -4.9508 11 14 4.3648 3.0998 -5.0033 12 1 5.0306 2.1558 -5.9364 13 1 4.0108 4.3462 -5.7288 14 1 5.2866 3.4230 -3.8847 15 16 4.2414 -1.0688 -1.3190 16 8 3.4687 -1.6439 -0.2743 17 8 4.1044 -1.4425 -2.6831 18 7 5.8286 -1.3238 -0.9214 19 6 6.3474 -1.5530 0.4394 20 6 7.8331 -1.1193 0.3757 21 6 8.2369 -1.5984 -1.0437 22 6 6.9529 -1.3653 -1.8678 23 1 7.0240 -0.4173 -2.4010 24 6 6.7572 -2.4940 -2.8470 25 7 5.6678 -3.1851 -2.8255 26 8 7.7211 -2.7818 -3.7461 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3634 -1.0278 0.0005 30 1 1.6886 1.8463 0.8899 31 1 1.6886 1.8463 -0.8900 32 1 3.8515 0.5682 0.8410 33 1 3.9785 2.1765 0.0889 34 1 4.8938 0.8982 -3.1087 35 1 4.5698 2.3637 -2.1518 36 1 1.6287 2.9927 -5.7663 37 1 5.8044 -0.9419 1.1603 38 1 6.2694 -2.6079 0.7024 39 1 7.9283 -0.0371 0.4646 40 1 8.4212 -1.6257 1.1410 41 1 9.0613 -1.0007 -1.4325 42 1 8.4976 -2.6567 -1.0339 43 1 5.5419 -3.9118 -3.4556 44 1 7.5051 -3.5206 -4.3314 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330372954.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:06 Heat of formation + Delta-G solvation = -147.915439 kcal Electronic energy + Delta-G solvation = -29928.750394 eV Core-core repulsion = 25815.493422 eV Total energy + Delta-G solvation = -4113.256972 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.139 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.57681 -39.00876 -38.68700 -37.90859 -36.98318 -36.41421 -34.50055 -33.92421 -31.69967 -31.21385 -30.33911 -28.92860 -27.03958 -24.64425 -24.18406 -23.13016 -22.33083 -21.91445 -19.66833 -19.31208 -19.02600 -18.60777 -18.10407 -17.52291 -17.12590 -16.69212 -16.42080 -16.13586 -16.05662 -15.66765 -15.45385 -15.07388 -14.69855 -14.63081 -14.38680 -14.15354 -13.97689 -13.86208 -13.56471 -13.40410 -12.93722 -12.80140 -12.77739 -12.69697 -12.43392 -12.34539 -12.30975 -12.16822 -12.04907 -12.00600 -11.77532 -11.58578 -11.48789 -10.82169 -10.75208 -10.47086 -10.42892 -10.08212 -9.70728 -8.23646 -6.27128 -0.20365 1.36276 1.40388 1.43225 1.48509 2.21503 2.37728 2.44780 2.99016 3.04857 3.10202 3.40406 3.51702 3.85884 4.02436 4.05336 4.18567 4.29055 4.30095 4.36591 4.51926 4.55963 4.63236 4.67035 4.73194 4.78960 4.81994 4.91269 4.98195 5.00779 5.07963 5.12305 5.13396 5.24774 5.39600 5.44050 5.54230 5.56291 5.90842 5.93859 6.37874 6.42691 6.77013 7.34378 7.43448 8.93599 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.010260 B = 0.006493 C = 0.004866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2728.377271 B = 4311.230934 C = 5752.250797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.400 6.400 3 C 0.028 3.972 4 C 0.132 3.868 5 N -0.994 5.994 6 C 0.237 3.763 7 C -0.526 4.526 8 H 0.031 0.969 9 C 0.004 3.996 10 N -0.952 5.952 11 Si 0.938 3.062 12 H -0.277 1.277 13 H -0.282 1.282 14 H -0.222 1.222 15 S 2.809 3.191 16 O -0.992 6.992 17 O -0.985 6.985 18 N -0.999 5.999 19 C 0.107 3.893 20 C -0.115 4.115 21 C -0.103 4.103 22 C 0.208 3.792 23 H 0.103 0.897 24 C 0.336 3.664 25 N -0.745 5.745 26 O -0.524 6.524 27 H 0.066 0.934 28 H 0.021 0.979 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.040 0.960 32 H 0.093 0.907 33 H 0.120 0.880 34 H 0.024 0.976 35 H 0.059 0.941 36 H 0.264 0.736 37 H 0.083 0.917 38 H 0.063 0.937 39 H 0.095 0.905 40 H 0.113 0.887 41 H 0.115 0.885 42 H 0.082 0.918 43 H 0.344 0.656 44 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.277 -4.594 12.962 22.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.319 6.319 3 C -0.050 4.050 4 C 0.006 3.994 5 N -0.833 5.833 6 C 0.112 3.888 7 C -0.565 4.565 8 H 0.049 0.951 9 C -0.193 4.193 10 N -0.593 5.593 11 Si 0.761 3.239 12 H -0.203 1.203 13 H -0.207 1.207 14 H -0.144 1.144 15 S 2.820 3.180 16 O -0.976 6.976 17 O -0.968 6.968 18 N -0.839 5.839 19 C -0.017 4.017 20 C -0.154 4.154 21 C -0.143 4.143 22 C 0.099 3.901 23 H 0.120 0.880 24 C 0.103 3.897 25 N -0.391 5.391 26 O -0.320 6.320 27 H 0.084 0.916 28 H 0.039 0.961 29 H 0.103 0.897 30 H 0.098 0.902 31 H 0.058 0.942 32 H 0.111 0.889 33 H 0.138 0.862 34 H 0.042 0.958 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.102 0.898 38 H 0.081 0.919 39 H 0.114 0.886 40 H 0.131 0.869 41 H 0.133 0.867 42 H 0.100 0.900 43 H 0.162 0.838 44 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 16.196 -4.788 13.354 21.530 hybrid contribution -0.447 -0.387 -2.372 2.444 sum 15.748 -5.175 10.982 19.885 Atomic orbital electron populations 1.22792 0.81256 1.02751 1.00015 1.88034 1.20034 1.28461 1.95407 1.23284 0.95919 0.84957 1.00889 1.21436 0.91924 1.01278 0.84723 1.57706 1.81108 1.27249 1.17260 1.19187 0.94900 0.92125 0.82610 1.21713 0.95276 1.30846 1.08686 0.95076 1.25913 0.99706 0.96983 0.96663 1.70088 1.27805 1.42280 1.19090 0.85867 0.80006 0.77913 0.80163 1.20261 1.20741 1.14395 1.01050 0.72198 0.72363 0.72428 1.93523 1.67874 1.76684 1.59532 1.93550 1.85153 1.81513 1.36630 1.59052 1.23624 1.86378 1.14862 1.22294 0.96779 1.01304 0.81347 1.22856 0.92723 1.03267 0.96513 1.22662 0.93416 1.03659 0.94572 1.20116 0.89066 0.92880 0.88064 0.87973 1.25096 0.82297 0.94370 0.87968 1.69489 1.21324 1.14137 1.34103 1.84719 1.45089 1.55344 1.46857 0.91594 0.96061 0.89677 0.90219 0.94152 0.88858 0.86216 0.95815 0.92267 0.92712 0.89823 0.91909 0.88648 0.86861 0.86696 0.89957 0.83762 0.73297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.03 11.01 113.37 1.25 2.28 16 2 O -0.40 -17.38 8.76 -130.61 -1.14 -18.52 16 3 C 0.03 1.04 6.03 71.98 0.43 1.47 16 4 C 0.13 4.38 5.84 86.38 0.50 4.88 16 5 N -0.99 -40.78 2.80 -519.83 -1.46 -42.24 16 6 C 0.24 10.87 4.19 85.63 0.36 11.23 16 7 C -0.53 -30.62 8.93 25.60 0.23 -30.39 16 8 H 0.03 2.08 7.03 -2.91 -0.02 2.06 16 9 C 0.00 0.25 5.47 84.66 0.46 0.71 16 10 N -0.95 -60.91 13.96 21.45 0.30 -60.61 16 11 Si 0.94 42.87 27.47 68.60 1.88 44.75 16 12 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 13 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 14 H -0.22 -8.53 6.54 99.48 0.65 -7.88 16 15 S 2.81 120.47 5.79 -56.49 -0.33 120.14 16 16 O -0.99 -46.21 14.87 -120.24 -1.79 -48.00 16 17 O -0.99 -51.02 13.59 -128.00 -1.74 -52.76 16 18 N -1.00 -30.35 3.19 -488.11 -1.56 -31.90 16 19 C 0.11 2.29 6.98 86.85 0.61 2.89 16 20 C -0.11 -1.40 7.09 31.99 0.23 -1.18 16 21 C -0.10 -1.55 6.40 31.79 0.20 -1.35 16 22 C 0.21 5.38 3.58 44.60 0.16 5.54 16 23 H 0.10 2.61 8.14 -2.39 -0.02 2.59 16 24 C 0.34 9.78 7.07 88.52 0.63 10.41 16 25 N -0.74 -26.18 10.14 -166.06 -1.68 -27.87 16 26 O -0.52 -11.66 13.48 -81.89 -1.10 -12.76 16 27 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.08 2.88 8.14 -2.38 -0.02 2.86 16 30 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 31 H 0.04 1.83 6.25 -2.39 -0.01 1.81 16 32 H 0.09 2.67 7.61 -2.38 -0.02 2.65 16 33 H 0.12 3.08 8.00 -2.39 -0.02 3.06 16 34 H 0.02 1.11 7.04 -2.39 -0.02 1.09 16 35 H 0.06 2.39 7.06 -2.39 -0.02 2.37 16 36 H 0.26 15.77 8.31 -92.70 -0.77 15.00 16 37 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.08 1.19 7.83 -2.39 -0.02 1.17 16 43 H 0.34 10.57 8.56 -92.71 -0.79 9.78 16 44 H 0.41 6.04 8.70 -74.06 -0.64 5.40 16 Total: -1.00 -90.39 365.21 -4.02 -94.42 By element: Atomic # 1 Polarization: 29.31 SS G_CDS: -0.46 Total: 28.85 kcal Atomic # 6 Polarization: 1.45 SS G_CDS: 5.06 Total: 6.50 kcal Atomic # 7 Polarization: -158.22 SS G_CDS: -4.40 Total: -162.62 kcal Atomic # 8 Polarization: -126.26 SS G_CDS: -5.78 Total: -132.04 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 1.88 Total: 44.75 kcal Atomic # 16 Polarization: 120.47 SS G_CDS: -0.33 Total: 120.14 kcal Total: -90.39 -4.02 -94.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330372954.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.500 kcal (2) G-P(sol) polarization free energy of solvation -90.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds