Wall clock time and date at job start Tue Mar 31 2020 18:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34227 * 117.00300 * 2 1 4 4 O 1.20832 * 119.99756 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00599 * 180.02562 * 3 2 1 6 6 N 1.46890 * 109.47677 * 179.97438 * 5 3 2 7 7 C 1.46898 * 111.00566 * 170.00057 * 6 5 3 8 8 C 1.53237 * 109.34645 * 187.25751 * 7 6 5 9 9 N 1.47086 * 108.51726 * 306.17246 * 8 7 6 10 10 S 1.65604 * 120.87605 * 231.18739 * 9 8 7 11 11 O 1.42104 * 106.40190 * 336.45466 * 10 9 8 12 12 O 1.42097 * 106.39779 * 203.54037 * 10 9 8 13 13 N 1.65597 * 107.22116 * 89.99881 * 10 9 8 14 14 C 1.46503 * 119.99794 * 269.99997 * 13 10 9 15 15 C 1.46500 * 120.00032 * 89.99643 * 13 10 9 16 16 C 1.50706 * 109.46949 * 265.00204 * 15 13 10 17 17 H 1.07995 * 120.00167 * 359.72205 * 16 15 13 18 18 C 1.37879 * 119.99394 * 179.97438 * 16 15 13 19 19 N 1.31514 * 119.99350 * 179.97438 * 18 16 15 20 20 Si 1.86798 * 120.00608 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47353 * 89.99430 * 20 18 16 22 22 H 1.48494 * 109.47031 * 209.99977 * 20 18 16 23 23 H 1.48504 * 109.46680 * 329.99678 * 20 18 16 24 24 C 1.47077 * 118.23863 * 51.45439 * 9 8 7 25 25 C 1.46905 * 111.00250 * 294.30711 * 6 5 3 26 26 H 1.09004 * 109.46951 * 299.99858 * 1 2 3 27 27 H 1.09000 * 109.46900 * 59.99953 * 1 2 3 28 28 H 1.08998 * 109.47069 * 180.02562 * 1 2 3 29 29 H 1.09010 * 109.46720 * 59.99491 * 5 3 2 30 30 H 1.09005 * 109.47015 * 300.00275 * 5 3 2 31 31 H 1.09004 * 109.49102 * 67.29168 * 7 6 5 32 32 H 1.09004 * 109.51458 * 307.23184 * 7 6 5 33 33 H 1.08994 * 109.62874 * 186.46195 * 8 7 6 34 34 H 1.09002 * 109.62659 * 65.87366 * 8 7 6 35 35 H 1.08997 * 109.46693 * 269.99378 * 14 13 10 36 36 H 1.08995 * 109.46999 * 29.99933 * 14 13 10 37 37 H 1.09004 * 109.46987 * 149.99789 * 14 13 10 38 38 H 1.09000 * 109.47175 * 145.00230 * 15 13 10 39 39 H 1.09001 * 109.47297 * 24.99737 * 15 13 10 40 40 H 0.97005 * 119.99656 * 180.02562 * 19 18 16 41 41 H 1.09000 * 109.62893 * 68.25573 * 24 9 8 42 42 H 1.08996 * 109.62869 * 188.83266 * 24 9 8 43 43 H 1.09004 * 109.48863 * 292.70220 * 25 6 5 44 44 H 1.08998 * 109.49466 * 52.77961 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 7 3.9829 2.6835 -0.0011 7 6 5.4274 2.8055 0.2365 8 6 5.7904 4.2843 0.4089 9 7 5.2866 5.0278 -0.7560 10 16 6.2793 6.0391 -1.6129 11 8 7.3256 6.4181 -0.7291 12 8 5.4323 6.9774 -2.2620 13 7 6.9825 5.1370 -2.8104 14 6 8.2545 4.4540 -2.5619 15 6 6.3325 5.0219 -4.1183 16 6 5.5000 3.7662 -4.1567 17 1 5.4628 3.1164 -3.2949 18 6 4.7901 3.4443 -5.2940 19 7 4.0641 2.3483 -5.3277 20 14 4.8606 4.5642 -6.7874 21 1 5.9806 4.1453 -7.6679 22 1 3.5814 4.4723 -7.5358 23 1 5.0759 5.9655 -6.3454 24 6 3.8764 4.8539 -1.1359 25 6 3.5904 3.3482 -1.2510 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.9557 0.7808 -0.8909 30 1 3.9565 0.7806 0.8892 31 1 5.9718 2.3940 -0.6135 32 1 5.6954 2.2575 1.1398 33 1 6.8733 4.3906 0.4708 34 1 5.3289 4.6710 1.3175 35 1 9.0796 5.1152 -2.8268 36 1 8.3249 4.1897 -1.5069 37 1 8.3053 3.5491 -3.1674 38 1 7.0919 4.9784 -4.8989 39 1 5.6913 5.8879 -4.2829 40 1 3.5649 2.1216 -6.1280 41 1 3.2347 5.2943 -0.3728 42 1 3.6935 5.3370 -2.0956 43 1 4.1604 2.9292 -2.0802 44 1 2.5257 3.1939 -1.4262 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331187544.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:29 Heat of formation + Delta-G solvation = -129.671745 kcal Electronic energy + Delta-G solvation = -29509.629809 eV Core-core repulsion = 25397.163943 eV Total energy + Delta-G solvation = -4112.465866 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.139 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.41608 -38.48174 -36.78716 -36.32323 -35.64565 -35.29550 -34.26306 -32.51024 -30.77398 -29.32995 -28.43332 -27.21999 -25.22962 -24.41853 -23.51290 -22.01128 -20.90621 -20.17658 -18.35886 -17.56254 -17.43359 -16.93147 -16.77723 -16.49063 -16.42315 -15.77512 -14.86527 -14.79966 -14.64496 -14.20450 -14.16212 -13.93411 -13.65685 -13.29240 -13.15115 -12.94069 -12.52643 -12.46409 -12.17385 -12.09979 -11.94203 -11.89125 -11.82064 -11.47566 -11.35979 -11.29974 -11.00576 -10.95763 -10.79090 -10.67617 -10.59411 -10.43900 -10.20115 -10.06089 -9.62516 -8.77471 -8.70299 -8.18358 -7.97732 -6.22329 -4.22425 1.18137 2.35972 2.66486 3.21224 3.29687 3.35895 3.39876 4.00709 4.14408 4.30815 4.83563 4.86642 4.95866 5.08366 5.11047 5.11580 5.18733 5.30811 5.41210 5.42615 5.49670 5.51790 5.64782 5.78675 5.84658 5.93979 5.98095 6.05506 6.18512 6.27402 6.39347 6.45448 6.46543 6.65088 6.79452 6.90413 7.08525 7.14282 7.24373 7.37608 7.50822 7.91932 8.35126 8.79626 9.39161 10.88916 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.010459 B = 0.005481 C = 0.004056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2676.476129 B = 5106.928589 C = 6900.857585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.365 6.365 3 C 0.462 3.538 4 O -0.487 6.487 5 C 0.065 3.935 6 N -0.525 5.525 7 C 0.045 3.955 8 C 0.133 3.867 9 N -1.004 6.004 10 S 2.788 3.212 11 O -0.996 6.996 12 O -0.979 6.979 13 N -0.993 5.993 14 C 0.107 3.893 15 C 0.213 3.787 16 C -0.541 4.541 17 H 0.084 0.916 18 C 0.078 3.922 19 N -0.892 5.892 20 Si 0.866 3.134 21 H -0.276 1.276 22 H -0.284 1.284 23 H -0.261 1.261 24 C 0.144 3.856 25 C 0.028 3.972 26 H 0.060 0.940 27 H 0.063 0.937 28 H 0.098 0.902 29 H 0.082 0.918 30 H 0.112 0.888 31 H 0.048 0.952 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.073 0.927 35 H 0.044 0.956 36 H 0.054 0.946 37 H 0.074 0.926 38 H 0.031 0.969 39 H 0.047 0.953 40 H 0.265 0.735 41 H 0.066 0.934 42 H 0.097 0.903 43 H 0.079 0.921 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.058 -4.523 11.088 11.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.282 6.282 3 C 0.304 3.696 4 O -0.372 6.372 5 C -0.064 4.064 6 N -0.252 5.252 7 C -0.084 4.084 8 C 0.007 3.993 9 N -0.844 5.844 10 S 2.797 3.203 11 O -0.980 6.980 12 O -0.963 6.963 13 N -0.834 5.834 14 C -0.040 4.040 15 C 0.089 3.911 16 C -0.580 4.580 17 H 0.102 0.898 18 C -0.125 4.125 19 N -0.529 5.529 20 Si 0.693 3.307 21 H -0.201 1.201 22 H -0.210 1.210 23 H -0.185 1.185 24 C 0.018 3.982 25 C -0.100 4.100 26 H 0.079 0.921 27 H 0.082 0.918 28 H 0.116 0.884 29 H 0.100 0.900 30 H 0.130 0.870 31 H 0.067 0.933 32 H 0.100 0.900 33 H 0.105 0.895 34 H 0.092 0.908 35 H 0.063 0.937 36 H 0.072 0.928 37 H 0.093 0.907 38 H 0.049 0.951 39 H 0.065 0.935 40 H 0.075 0.925 41 H 0.085 0.915 42 H 0.115 0.885 43 H 0.097 0.903 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.394 -3.141 11.492 11.920 hybrid contribution 0.013 -0.532 -1.695 1.776 sum -0.381 -3.673 9.797 10.470 Atomic orbital electron populations 1.23206 0.76502 1.03354 1.02526 1.86478 1.23323 1.33821 1.84575 1.23650 0.92025 0.81279 0.72654 1.90650 1.66805 1.36024 1.43754 1.21512 0.88049 0.92311 1.04563 1.61620 1.14911 1.10709 1.37913 1.22457 0.87397 0.97341 1.01243 1.21355 0.98840 0.90384 0.88716 1.58209 1.21744 1.63116 1.41304 1.01715 0.72522 0.73733 0.72327 1.93535 1.56772 1.81946 1.65780 1.93559 1.67843 1.59372 1.75500 1.57505 1.31452 1.67468 1.26987 1.21232 0.84574 0.97779 1.00400 1.19614 0.93214 0.98604 0.79673 1.21476 1.27838 1.06828 1.01848 0.89807 1.24818 0.94589 0.94818 0.98299 1.69864 1.29937 1.24039 1.29099 0.86988 0.77920 0.82373 0.83442 1.20121 1.20977 1.18490 1.21411 0.79821 0.95848 1.01109 1.22926 1.02840 0.94499 0.89727 0.92101 0.91820 0.88374 0.90001 0.87011 0.93331 0.90037 0.89496 0.90834 0.93701 0.92757 0.90699 0.95140 0.93529 0.92509 0.91521 0.88508 0.90331 0.89126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.39 10.56 101.05 1.07 1.45 16 2 O -0.37 -4.78 10.56 -39.25 -0.41 -5.19 16 3 C 0.46 6.81 7.62 36.01 0.27 7.09 16 4 O -0.49 -8.50 14.08 -18.75 -0.26 -8.77 16 5 C 0.06 0.84 5.56 -4.98 -0.03 0.81 16 6 N -0.53 -7.83 4.37 -235.46 -1.03 -8.86 16 7 C 0.04 0.58 5.62 -3.70 -0.02 0.56 16 8 C 0.13 1.85 6.53 -3.60 -0.02 1.83 16 9 N -1.00 -17.30 3.38 -112.98 -0.38 -17.69 16 10 S 2.79 54.45 6.07 -107.50 -0.65 53.79 16 11 O -1.00 -19.76 15.99 -57.17 -0.91 -20.68 16 12 O -0.98 -22.05 15.46 -57.17 -0.88 -22.94 16 13 N -0.99 -19.42 3.23 -123.05 -0.40 -19.82 16 14 C 0.11 1.71 10.31 59.85 0.62 2.33 16 15 C 0.21 4.79 4.48 -5.19 -0.02 4.76 16 16 C -0.54 -13.42 9.70 -34.44 -0.33 -13.76 16 17 H 0.08 2.16 5.91 -52.49 -0.31 1.85 16 18 C 0.08 2.05 5.47 -17.82 -0.10 1.95 16 19 N -0.89 -24.58 13.96 55.43 0.77 -23.81 16 20 Si 0.87 20.23 27.47 -169.99 -4.67 15.56 16 21 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 23 H -0.26 -6.01 6.54 56.52 0.37 -5.64 16 24 C 0.14 2.60 6.56 -3.37 -0.02 2.57 16 25 C 0.03 0.51 5.27 -3.46 -0.02 0.49 16 26 H 0.06 0.59 8.13 -51.93 -0.42 0.16 16 27 H 0.06 0.69 8.13 -51.93 -0.42 0.27 16 28 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.08 1.11 8.12 -51.92 -0.42 0.69 16 30 H 0.11 1.09 7.97 -51.93 -0.41 0.68 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.08 0.80 7.99 -51.93 -0.41 0.38 16 33 H 0.09 1.11 7.22 -51.93 -0.37 0.74 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.05 0.76 7.79 -51.93 -0.40 0.35 16 37 H 0.07 1.19 8.07 -51.93 -0.42 0.77 16 38 H 0.03 0.67 7.54 -51.93 -0.39 0.28 16 39 H 0.05 1.12 5.97 -51.93 -0.31 0.81 16 40 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 41 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.10 1.93 7.21 -51.93 -0.37 1.56 16 43 H 0.08 1.66 5.69 -51.93 -0.30 1.36 16 44 H 0.09 1.76 5.77 -51.93 -0.30 1.46 16 LS Contribution 363.56 15.07 5.48 5.48 Total: -1.00 -32.11 363.56 -8.52 -40.63 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -6.56 Total: 2.19 kcal Atomic # 6 Polarization: 8.70 SS G_CDS: 1.39 Total: 10.09 kcal Atomic # 7 Polarization: -69.14 SS G_CDS: -1.03 Total: -70.17 kcal Atomic # 8 Polarization: -55.09 SS G_CDS: -2.48 Total: -57.57 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -4.67 Total: 15.56 kcal Atomic # 16 Polarization: 54.45 SS G_CDS: -0.65 Total: 53.79 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.11 -8.52 -40.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331187544.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.044 kcal (2) G-P(sol) polarization free energy of solvation -32.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds