Wall clock time and date at job start Tue Mar 31 2020 18:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34227 * 117.00300 * 2 1 4 4 O 1.20832 * 119.99756 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00599 * 180.02562 * 3 2 1 6 6 N 1.46890 * 109.47677 * 179.97438 * 5 3 2 7 7 C 1.46898 * 111.00566 * 170.00057 * 6 5 3 8 8 C 1.53237 * 109.34645 * 187.25751 * 7 6 5 9 9 N 1.47086 * 108.51726 * 306.17246 * 8 7 6 10 10 S 1.65604 * 120.87605 * 231.18739 * 9 8 7 11 11 O 1.42104 * 106.40190 * 336.45466 * 10 9 8 12 12 O 1.42097 * 106.39779 * 203.54037 * 10 9 8 13 13 N 1.65597 * 107.22116 * 89.99881 * 10 9 8 14 14 C 1.46503 * 119.99794 * 269.99997 * 13 10 9 15 15 C 1.46500 * 120.00032 * 89.99643 * 13 10 9 16 16 C 1.50706 * 109.46949 * 265.00204 * 15 13 10 17 17 H 1.07995 * 120.00167 * 359.72205 * 16 15 13 18 18 C 1.37879 * 119.99394 * 179.97438 * 16 15 13 19 19 N 1.31514 * 119.99350 * 179.97438 * 18 16 15 20 20 Si 1.86798 * 120.00608 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47353 * 89.99430 * 20 18 16 22 22 H 1.48494 * 109.47031 * 209.99977 * 20 18 16 23 23 H 1.48504 * 109.46680 * 329.99678 * 20 18 16 24 24 C 1.47077 * 118.23863 * 51.45439 * 9 8 7 25 25 C 1.46905 * 111.00250 * 294.30711 * 6 5 3 26 26 H 1.09004 * 109.46951 * 299.99858 * 1 2 3 27 27 H 1.09000 * 109.46900 * 59.99953 * 1 2 3 28 28 H 1.08998 * 109.47069 * 180.02562 * 1 2 3 29 29 H 1.09010 * 109.46720 * 59.99491 * 5 3 2 30 30 H 1.09005 * 109.47015 * 300.00275 * 5 3 2 31 31 H 1.09004 * 109.49102 * 67.29168 * 7 6 5 32 32 H 1.09004 * 109.51458 * 307.23184 * 7 6 5 33 33 H 1.08994 * 109.62874 * 186.46195 * 8 7 6 34 34 H 1.09002 * 109.62659 * 65.87366 * 8 7 6 35 35 H 1.08997 * 109.46693 * 269.99378 * 14 13 10 36 36 H 1.08995 * 109.46999 * 29.99933 * 14 13 10 37 37 H 1.09004 * 109.46987 * 149.99789 * 14 13 10 38 38 H 1.09000 * 109.47175 * 145.00230 * 15 13 10 39 39 H 1.09001 * 109.47297 * 24.99737 * 15 13 10 40 40 H 0.97005 * 119.99656 * 180.02562 * 19 18 16 41 41 H 1.09000 * 109.62893 * 68.25573 * 24 9 8 42 42 H 1.08996 * 109.62869 * 188.83266 * 24 9 8 43 43 H 1.09004 * 109.48863 * 292.70220 * 25 6 5 44 44 H 1.08998 * 109.49466 * 52.77961 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 7 3.9829 2.6835 -0.0011 7 6 5.4274 2.8055 0.2365 8 6 5.7904 4.2843 0.4089 9 7 5.2866 5.0278 -0.7560 10 16 6.2793 6.0391 -1.6129 11 8 7.3256 6.4181 -0.7291 12 8 5.4323 6.9774 -2.2620 13 7 6.9825 5.1370 -2.8104 14 6 8.2545 4.4540 -2.5619 15 6 6.3325 5.0219 -4.1183 16 6 5.5000 3.7662 -4.1567 17 1 5.4628 3.1164 -3.2949 18 6 4.7901 3.4443 -5.2940 19 7 4.0641 2.3483 -5.3277 20 14 4.8606 4.5642 -6.7874 21 1 5.9806 4.1453 -7.6679 22 1 3.5814 4.4723 -7.5358 23 1 5.0759 5.9655 -6.3454 24 6 3.8764 4.8539 -1.1359 25 6 3.5904 3.3482 -1.2510 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.9557 0.7808 -0.8909 30 1 3.9565 0.7806 0.8892 31 1 5.9718 2.3940 -0.6135 32 1 5.6954 2.2575 1.1398 33 1 6.8733 4.3906 0.4708 34 1 5.3289 4.6710 1.3175 35 1 9.0796 5.1152 -2.8268 36 1 8.3249 4.1897 -1.5069 37 1 8.3053 3.5491 -3.1674 38 1 7.0919 4.9784 -4.8989 39 1 5.6913 5.8879 -4.2829 40 1 3.5649 2.1216 -6.1280 41 1 3.2347 5.2943 -0.3728 42 1 3.6935 5.3370 -2.0956 43 1 4.1604 2.9292 -2.0802 44 1 2.5257 3.1939 -1.4262 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331187544.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:28 Heat of formation + Delta-G solvation = -154.661618 kcal Electronic energy + Delta-G solvation = -29510.713451 eV Core-core repulsion = 25397.163943 eV Total energy + Delta-G solvation = -4113.549508 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.139 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.54579 -39.70129 -38.40380 -37.46344 -37.26291 -36.92573 -35.52893 -34.45309 -32.05118 -30.44742 -30.19639 -28.21181 -26.76403 -25.62050 -24.79534 -23.79597 -22.03939 -21.49989 -19.84098 -19.10211 -18.75858 -18.58434 -18.34163 -17.58391 -17.54954 -17.31111 -16.37788 -16.03071 -15.96708 -15.76798 -15.47227 -15.22377 -15.08613 -14.59789 -14.41449 -14.35677 -14.18486 -13.98518 -13.52516 -13.47760 -13.45016 -13.13103 -13.02236 -13.00123 -12.93519 -12.84509 -12.43438 -12.32058 -12.27816 -12.21938 -12.00203 -11.80038 -11.71876 -11.54048 -11.29327 -10.72516 -10.11888 -9.72928 -9.28606 -8.24330 -6.26103 -0.35455 1.22560 1.34347 1.40605 1.48489 1.66754 1.91330 2.36476 2.52300 2.93780 3.10290 3.32705 3.68215 3.86016 4.01849 4.11927 4.19144 4.29969 4.33305 4.34108 4.40368 4.44985 4.50894 4.54446 4.67300 4.70720 4.74740 4.75539 4.86584 4.94599 5.01159 5.03783 5.10537 5.19908 5.35677 5.39253 5.50232 5.57607 5.85517 5.90976 6.02918 6.36028 6.79068 6.81063 7.37226 8.88432 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.010459 B = 0.005481 C = 0.004056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2676.476129 B = 5106.928589 C = 6900.857585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.367 6.367 3 C 0.460 3.540 4 O -0.522 6.522 5 C 0.065 3.935 6 N -0.526 5.526 7 C 0.046 3.954 8 C 0.124 3.876 9 N -1.003 6.003 10 S 2.797 3.203 11 O -0.996 6.996 12 O -1.013 7.013 13 N -0.998 5.998 14 C 0.098 3.902 15 C 0.218 3.782 16 C -0.527 4.527 17 H 0.069 0.931 18 C 0.031 3.969 19 N -0.928 5.928 20 Si 0.912 3.088 21 H -0.263 1.263 22 H -0.288 1.288 23 H -0.258 1.258 24 C 0.148 3.852 25 C 0.045 3.955 26 H 0.065 0.935 27 H 0.051 0.949 28 H 0.133 0.867 29 H 0.076 0.924 30 H 0.155 0.845 31 H 0.036 0.964 32 H 0.126 0.874 33 H 0.103 0.897 34 H 0.090 0.910 35 H 0.062 0.938 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.042 0.958 39 H 0.031 0.969 40 H 0.263 0.737 41 H 0.078 0.922 42 H 0.069 0.931 43 H 0.044 0.956 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.408 -5.189 12.679 13.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.283 6.283 3 C 0.303 3.697 4 O -0.410 6.410 5 C -0.064 4.064 6 N -0.252 5.252 7 C -0.082 4.082 8 C -0.001 4.001 9 N -0.843 5.843 10 S 2.807 3.193 11 O -0.980 6.980 12 O -0.998 6.998 13 N -0.839 5.839 14 C -0.047 4.047 15 C 0.093 3.907 16 C -0.566 4.566 17 H 0.087 0.913 18 C -0.169 4.169 19 N -0.568 5.568 20 Si 0.737 3.263 21 H -0.188 1.188 22 H -0.214 1.214 23 H -0.182 1.182 24 C 0.022 3.978 25 C -0.084 4.084 26 H 0.084 0.916 27 H 0.069 0.931 28 H 0.151 0.849 29 H 0.094 0.906 30 H 0.172 0.828 31 H 0.055 0.945 32 H 0.144 0.856 33 H 0.121 0.879 34 H 0.108 0.892 35 H 0.080 0.920 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.060 0.940 39 H 0.049 0.951 40 H 0.073 0.927 41 H 0.096 0.904 42 H 0.087 0.913 43 H 0.062 0.938 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.001 -3.822 13.102 13.684 hybrid contribution -0.421 -0.395 -2.074 2.153 sum 0.580 -4.217 11.028 11.821 Atomic orbital electron populations 1.23487 0.74966 1.05554 1.02199 1.86471 1.24886 1.32891 1.84049 1.24038 0.92753 0.81212 0.71663 1.90636 1.67649 1.37168 1.45537 1.21676 0.87107 0.91328 1.06240 1.61618 1.16359 1.11815 1.35407 1.22583 0.85760 0.97137 1.02756 1.21724 0.99943 0.90646 0.87793 1.58050 1.20917 1.63297 1.42061 1.01300 0.72246 0.73626 0.72163 1.93526 1.56801 1.82157 1.65558 1.93511 1.68742 1.61159 1.76358 1.57456 1.32634 1.67882 1.25891 1.21497 0.83360 0.97895 1.01986 1.19379 0.93173 0.96582 0.81560 1.21654 1.27057 1.06961 1.00939 0.91259 1.25445 0.94776 0.95893 1.00801 1.69975 1.31388 1.25731 1.29693 0.86246 0.78012 0.81041 0.81000 1.18826 1.21375 1.18169 1.21274 0.80622 0.95786 1.00147 1.22551 1.01009 0.94586 0.90301 0.91586 0.93055 0.84933 0.90578 0.82756 0.94524 0.85618 0.87864 0.89178 0.91968 0.90456 0.90778 0.94005 0.95123 0.92741 0.90358 0.91266 0.93815 0.91068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.60 10.56 113.37 1.20 1.80 16 2 O -0.37 -9.21 10.56 -51.39 -0.54 -9.75 16 3 C 0.46 13.30 7.62 71.24 0.54 13.85 16 4 O -0.52 -18.41 14.08 21.95 0.31 -18.11 16 5 C 0.06 1.59 5.56 85.56 0.48 2.06 16 6 N -0.53 -14.97 4.37 -898.87 -3.93 -18.90 16 7 C 0.05 1.06 5.62 86.38 0.49 1.55 16 8 C 0.12 3.11 6.53 86.35 0.56 3.68 16 9 N -1.00 -33.70 3.38 -511.35 -1.73 -35.43 16 10 S 2.80 107.09 6.07 -56.49 -0.34 106.75 16 11 O -1.00 -37.54 15.99 -128.00 -2.05 -39.58 16 12 O -1.01 -46.10 15.46 -128.00 -1.98 -48.08 16 13 N -1.00 -38.07 3.23 -543.21 -1.75 -39.82 16 14 C 0.10 2.93 10.31 127.77 1.32 4.24 16 15 C 0.22 9.75 4.48 85.63 0.38 10.14 16 16 C -0.53 -26.48 9.70 25.60 0.25 -26.23 16 17 H 0.07 3.65 5.91 -2.91 -0.02 3.64 16 18 C 0.03 1.62 5.47 84.66 0.46 2.09 16 19 N -0.93 -52.44 13.96 21.45 0.30 -52.14 16 20 Si 0.91 41.75 27.47 68.60 1.88 43.64 16 21 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 22 H -0.29 -13.27 7.11 99.48 0.71 -12.57 16 23 H -0.26 -11.58 6.54 99.48 0.65 -10.93 16 24 C 0.15 5.43 6.56 86.50 0.57 6.00 16 25 C 0.04 1.65 5.27 86.54 0.46 2.11 16 26 H 0.07 1.21 8.13 -2.38 -0.02 1.19 16 27 H 0.05 1.12 8.13 -2.39 -0.02 1.10 16 28 H 0.13 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.08 2.00 8.12 -2.38 -0.02 1.99 16 30 H 0.15 2.43 7.97 -2.38 -0.02 2.41 16 31 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.13 1.85 7.99 -2.39 -0.02 1.83 16 33 H 0.10 2.28 7.22 -2.39 -0.02 2.26 16 34 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.08 1.94 7.79 -2.39 -0.02 1.92 16 37 H 0.07 2.23 8.07 -2.39 -0.02 2.21 16 38 H 0.04 1.78 7.54 -2.39 -0.02 1.76 16 39 H 0.03 1.48 5.97 -2.39 -0.01 1.47 16 40 H 0.26 14.29 8.31 -92.70 -0.77 13.52 16 41 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 42 H 0.07 2.90 7.21 -2.39 -0.02 2.89 16 43 H 0.04 1.93 5.69 -2.38 -0.01 1.91 16 44 H 0.07 2.90 5.77 -2.39 -0.01 2.88 16 Total: -1.00 -70.43 363.56 -2.18 -72.60 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: 0.95 Total: 17.54 kcal Atomic # 6 Polarization: 14.58 SS G_CDS: 6.70 Total: 21.28 kcal Atomic # 7 Polarization: -139.18 SS G_CDS: -7.11 Total: -146.29 kcal Atomic # 8 Polarization: -111.26 SS G_CDS: -4.26 Total: -115.52 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 1.88 Total: 43.64 kcal Atomic # 16 Polarization: 107.09 SS G_CDS: -0.34 Total: 106.75 kcal Total: -70.43 -2.18 -72.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331187544.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.058 kcal (2) G-P(sol) polarization free energy of solvation -70.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds