Wall clock time and date at job start Tue Mar 31 2020 18:48:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46496 * 120.00049 * 2 1 4 4 C 1.34779 * 119.99666 * 180.02562 * 2 1 3 5 5 O 1.21276 * 120.00535 * 359.97438 * 4 2 1 6 6 C 1.50700 * 119.99853 * 179.97438 * 4 2 1 7 7 O 1.42898 * 109.47258 * 179.97438 * 6 4 2 8 8 C 1.42905 * 113.99828 * 180.02562 * 7 6 4 9 9 C 1.53946 * 113.84028 * 111.35437 * 8 7 6 10 10 N 1.47575 * 86.11655 * 137.96231 * 9 8 7 11 11 S 1.65601 * 134.49096 * 155.36424 * 10 9 8 12 12 O 1.42100 * 106.40391 * 23.53596 * 11 10 9 13 13 O 1.42093 * 106.40374 * 156.45798 * 11 10 9 14 14 N 1.65607 * 107.21387 * 269.99879 * 11 10 9 15 15 C 1.46500 * 119.99876 * 269.99633 * 14 11 10 16 16 C 1.46497 * 119.99948 * 90.00287 * 14 11 10 17 17 C 1.50697 * 109.47275 * 94.99656 * 16 14 11 18 18 H 1.08003 * 120.00011 * 359.97438 * 17 16 14 19 19 C 1.37885 * 119.99804 * 179.97438 * 17 16 14 20 20 N 1.31510 * 120.00092 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99834 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47106 * 59.99974 * 21 19 17 23 23 H 1.48500 * 109.47203 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.47153 * 300.00200 * 21 19 17 25 25 C 1.47582 * 91.01854 * 335.36079 * 10 9 8 26 26 H 1.09002 * 109.47393 * 239.99534 * 1 2 3 27 27 H 1.09001 * 109.47165 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.47298 * 119.99837 * 1 2 3 29 29 H 1.08996 * 109.47576 * 270.00137 * 3 2 1 30 30 H 1.09004 * 109.47127 * 30.00609 * 3 2 1 31 31 H 1.09000 * 109.46977 * 150.00014 * 3 2 1 32 32 H 1.09007 * 109.47209 * 60.00146 * 6 4 2 33 33 H 1.09002 * 109.47539 * 300.00316 * 6 4 2 34 34 H 1.09002 * 112.94686 * 339.66751 * 8 7 6 35 35 H 1.08997 * 113.77274 * 252.27024 * 9 8 7 36 36 H 1.09007 * 113.76747 * 23.66040 * 9 8 7 37 37 H 1.08993 * 109.46985 * 90.00296 * 15 14 11 38 38 H 1.08997 * 109.47347 * 210.00403 * 15 14 11 39 39 H 1.08996 * 109.46947 * 330.00291 * 15 14 11 40 40 H 1.09007 * 109.46862 * 214.99875 * 16 14 11 41 41 H 1.09002 * 109.47334 * 334.99618 * 16 14 11 42 42 H 0.97003 * 119.99872 * 179.97438 * 20 19 17 43 43 H 1.09005 * 113.76570 * 270.33847 * 25 10 9 44 44 H 1.08997 * 113.77023 * 138.93916 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1388 -1.1673 -0.0005 5 8 1.5325 -2.2176 -0.0005 6 6 3.6458 -1.1673 -0.0011 7 8 4.1221 -2.5146 -0.0010 8 6 5.5467 -2.6274 -0.0009 9 6 6.1265 -3.1875 1.3106 10 7 7.0262 -3.9851 0.4549 11 16 8.5149 -4.6792 0.6656 12 8 8.6733 -4.8721 2.0645 13 8 8.6020 -5.7366 -0.2795 14 7 9.6469 -3.5567 0.2172 15 6 10.1115 -3.4991 -1.1710 16 6 10.1838 -2.6214 1.2087 17 6 11.4717 -3.1678 1.7689 18 1 11.8520 -4.1170 1.4215 19 6 12.1645 -2.4558 2.7251 20 7 11.7011 -1.3002 3.1486 21 14 13.7612 -3.1326 3.4190 22 1 14.7441 -3.3072 2.3196 23 1 14.3060 -2.1840 4.4233 24 1 13.5034 -4.4445 4.0653 25 6 6.0664 -3.9158 -0.6641 26 1 -0.3634 -0.5139 0.8899 27 1 -0.3633 1.0277 0.0005 28 1 -0.3634 -0.5138 -0.8900 29 1 2.3791 1.5834 -1.0276 30 1 1.6084 2.0283 0.5139 31 1 3.1499 1.1383 0.5138 32 1 4.0095 -0.6537 0.8889 33 1 4.0089 -0.6532 -0.8911 34 1 6.0447 -1.7227 -0.3498 35 1 6.6423 -2.4426 1.9164 36 1 5.4187 -3.7872 1.8830 37 1 9.4772 -2.8181 -1.7384 38 1 11.1410 -3.1419 -1.1951 39 1 10.0619 -4.4945 -1.6123 40 1 10.3734 -1.6584 0.7345 41 1 9.4621 -2.4933 2.0155 42 1 12.1883 -0.7995 3.8216 43 1 5.3411 -4.7295 -0.6717 44 1 6.5344 -3.7523 -1.6348 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332075570.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:39 Heat of formation + Delta-G solvation = -98.058468 kcal Electronic energy + Delta-G solvation = -27442.509813 eV Core-core repulsion = 23331.414802 eV Total energy + Delta-G solvation = -4111.095012 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.139 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.27862 -39.37319 -36.59931 -36.53397 -35.82055 -35.50984 -35.15674 -32.45954 -29.97274 -28.08425 -27.80567 -27.18138 -26.22793 -25.44849 -25.06480 -22.32071 -21.17607 -19.87190 -18.41112 -17.75884 -17.29683 -17.12818 -16.70620 -16.68233 -16.34328 -16.07357 -15.75919 -15.13281 -14.58358 -14.47313 -13.96347 -13.89365 -13.50549 -13.33929 -13.23813 -13.14203 -13.07510 -12.94900 -12.53777 -12.44215 -12.32739 -12.18356 -11.83716 -11.66603 -11.47890 -11.43983 -11.19415 -11.17002 -11.08217 -10.72865 -10.52832 -10.06246 -10.04726 -9.80317 -9.76534 -9.13108 -8.98027 -8.46713 -8.10152 -6.09635 -4.13413 1.07497 2.27734 2.35706 3.32077 3.33749 3.35642 3.41051 3.58754 4.04800 4.18905 4.31872 4.42816 4.55799 4.69123 4.71805 4.75815 4.79959 4.85389 4.92338 4.99746 5.18316 5.20261 5.25193 5.40136 5.40654 5.59623 5.61417 5.66754 5.77623 5.95885 5.98545 6.02971 6.24794 6.50440 6.59336 6.76391 6.97406 7.16901 7.35884 7.56787 7.82451 7.88103 8.17113 8.88671 9.51904 10.99003 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.016970 B = 0.002677 C = 0.002448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.530492 B =10457.988001 C =11434.456704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.626 5.626 3 C 0.073 3.927 4 C 0.513 3.487 5 O -0.515 6.515 6 C 0.043 3.957 7 O -0.350 6.350 8 C 0.050 3.950 9 C 0.113 3.887 10 N -1.047 6.047 11 S 2.799 3.201 12 O -0.956 6.956 13 O -0.991 6.991 14 N -0.994 5.994 15 C 0.096 3.904 16 C 0.258 3.742 17 C -0.530 4.530 18 H 0.060 0.940 19 C 0.063 3.937 20 N -0.897 5.897 21 Si 0.897 3.103 22 H -0.276 1.276 23 H -0.286 1.286 24 H -0.274 1.274 25 C 0.134 3.866 26 H 0.061 0.939 27 H 0.076 0.924 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.103 0.897 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.037 0.963 38 H 0.078 0.922 39 H 0.065 0.935 40 H 0.034 0.966 41 H 0.036 0.964 42 H 0.264 0.736 43 H 0.092 0.908 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.055 8.543 -9.289 22.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.363 5.363 3 C -0.070 4.070 4 C 0.300 3.700 5 O -0.389 6.389 6 C -0.037 4.037 7 O -0.266 6.266 8 C -0.010 4.010 9 C -0.013 4.013 10 N -0.887 5.887 11 S 2.809 3.191 12 O -0.940 6.940 13 O -0.975 6.975 14 N -0.837 5.837 15 C -0.051 4.051 16 C 0.136 3.864 17 C -0.569 4.569 18 H 0.078 0.922 19 C -0.140 4.140 20 N -0.536 5.536 21 Si 0.725 3.275 22 H -0.202 1.202 23 H -0.211 1.211 24 H -0.200 1.200 25 C 0.008 3.992 26 H 0.080 0.920 27 H 0.095 0.905 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.102 0.898 33 H 0.100 0.900 34 H 0.121 0.879 35 H 0.105 0.895 36 H 0.109 0.891 37 H 0.056 0.944 38 H 0.097 0.903 39 H 0.084 0.916 40 H 0.052 0.948 41 H 0.054 0.946 42 H 0.074 0.926 43 H 0.110 0.890 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -19.091 6.982 -8.811 22.155 hybrid contribution 1.106 0.526 0.361 1.277 sum -17.985 7.508 -8.450 21.242 Atomic orbital electron populations 1.21623 0.78617 1.02302 1.02572 1.47719 1.07277 1.06212 1.75053 1.21932 0.97558 0.85190 1.02281 1.20359 0.89573 0.83410 0.76657 1.90744 1.69960 1.30791 1.47355 1.22319 0.91891 0.86642 1.02808 1.88074 1.20723 1.23262 1.94562 1.24639 0.80050 0.99059 0.97221 1.23177 0.90719 0.93371 0.94055 1.60821 1.32524 1.71687 1.23708 1.01462 0.71365 0.72968 0.73313 1.93629 1.84740 1.84377 1.31235 1.93521 1.86373 1.52660 1.64985 1.57700 1.54470 1.54473 1.17012 1.21340 1.01161 1.01094 0.81462 1.19043 0.94379 0.87844 0.85132 1.21456 1.06902 1.06123 1.22411 0.92208 1.24925 0.98158 0.94823 0.96063 1.69900 1.39544 1.13486 1.30658 0.86564 0.83075 0.79037 0.78833 1.20157 1.21146 1.19953 1.22791 0.89498 0.96268 0.90633 0.91987 0.90547 0.92022 0.92154 0.90578 0.90646 0.89787 0.89967 0.87919 0.89450 0.89099 0.94397 0.90333 0.91598 0.94769 0.94586 0.92626 0.88978 0.89709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.56 10.16 59.85 0.61 1.17 16 2 N -0.63 -4.60 3.27 -189.52 -0.62 -5.22 16 3 C 0.07 0.26 10.21 59.84 0.61 0.87 16 4 C 0.51 5.48 7.75 -10.98 -0.09 5.39 16 5 O -0.51 -7.89 16.50 -14.35 -0.24 -8.13 16 6 C 0.04 0.37 4.82 36.01 0.17 0.55 16 7 O -0.35 -4.14 9.90 -55.14 -0.55 -4.69 16 8 C 0.05 0.56 4.49 -25.80 -0.12 0.44 16 9 C 0.11 1.52 8.81 -2.98 -0.03 1.50 16 10 N -1.05 -16.55 4.17 -119.02 -0.50 -17.05 16 11 S 2.80 57.29 6.61 -107.50 -0.71 56.58 16 12 O -0.96 -23.52 17.08 -57.17 -0.98 -24.49 16 13 O -0.99 -21.32 16.71 -57.17 -0.96 -22.27 16 14 N -0.99 -20.57 3.23 -123.06 -0.40 -20.96 16 15 C 0.10 1.63 10.68 59.85 0.64 2.27 16 16 C 0.26 6.36 5.08 -5.20 -0.03 6.34 16 17 C -0.53 -14.81 9.38 -34.44 -0.32 -15.13 16 18 H 0.06 1.68 7.81 -52.48 -0.41 1.27 16 19 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 20 N -0.90 -25.79 13.29 55.43 0.74 -25.05 16 21 Si 0.90 21.77 29.54 -169.99 -5.02 16.75 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.27 -6.72 7.11 56.52 0.40 -6.31 16 25 C 0.13 1.66 8.81 -2.97 -0.03 1.63 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.08 0.24 7.79 -51.93 -0.40 -0.16 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.16 8.14 -51.93 -0.42 -0.26 16 30 H 0.08 0.16 7.92 -51.93 -0.41 -0.25 16 31 H 0.07 0.21 6.44 -51.93 -0.33 -0.12 16 32 H 0.08 0.55 7.40 -51.92 -0.38 0.16 16 33 H 0.08 0.49 8.11 -51.93 -0.42 0.07 16 34 H 0.10 0.91 7.89 -51.93 -0.41 0.50 16 35 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.09 1.19 8.14 -51.92 -0.42 0.77 16 37 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 39 H 0.07 1.07 7.02 -51.93 -0.36 0.71 16 40 H 0.03 0.85 8.11 -51.93 -0.42 0.42 16 41 H 0.04 0.94 7.61 -51.93 -0.40 0.55 16 42 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 43 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 44 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 384.88 15.07 5.80 5.80 Total: -1.00 -38.42 384.88 -8.98 -47.40 By element: Atomic # 1 Polarization: 1.55 SS G_CDS: -6.89 Total: -5.35 kcal Atomic # 6 Polarization: 5.35 SS G_CDS: 1.33 Total: 6.68 kcal Atomic # 7 Polarization: -67.51 SS G_CDS: -0.78 Total: -68.28 kcal Atomic # 8 Polarization: -56.87 SS G_CDS: -2.71 Total: -59.58 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Atomic # 16 Polarization: 57.29 SS G_CDS: -0.71 Total: 56.58 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -38.42 -8.98 -47.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332075570.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.658 kcal (2) G-P(sol) polarization free energy of solvation -38.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds