Wall clock time and date at job start Tue Mar 31 2020 18:48:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46496 * 120.00049 * 2 1 4 4 C 1.34779 * 119.99666 * 180.02562 * 2 1 3 5 5 O 1.21276 * 120.00535 * 359.97438 * 4 2 1 6 6 C 1.50700 * 119.99853 * 179.97438 * 4 2 1 7 7 O 1.42898 * 109.47258 * 179.97438 * 6 4 2 8 8 C 1.42905 * 113.99828 * 180.02562 * 7 6 4 9 9 C 1.53946 * 113.84028 * 111.35437 * 8 7 6 10 10 N 1.47575 * 86.11655 * 137.96231 * 9 8 7 11 11 S 1.65601 * 134.49096 * 155.36424 * 10 9 8 12 12 O 1.42100 * 106.40391 * 23.53596 * 11 10 9 13 13 O 1.42093 * 106.40374 * 156.45798 * 11 10 9 14 14 N 1.65607 * 107.21387 * 269.99879 * 11 10 9 15 15 C 1.46500 * 119.99876 * 269.99633 * 14 11 10 16 16 C 1.46497 * 119.99948 * 90.00287 * 14 11 10 17 17 C 1.50697 * 109.47275 * 94.99656 * 16 14 11 18 18 H 1.08003 * 120.00011 * 359.97438 * 17 16 14 19 19 C 1.37885 * 119.99804 * 179.97438 * 17 16 14 20 20 N 1.31510 * 120.00092 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99834 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47106 * 59.99974 * 21 19 17 23 23 H 1.48500 * 109.47203 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.47153 * 300.00200 * 21 19 17 25 25 C 1.47582 * 91.01854 * 335.36079 * 10 9 8 26 26 H 1.09002 * 109.47393 * 239.99534 * 1 2 3 27 27 H 1.09001 * 109.47165 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.47298 * 119.99837 * 1 2 3 29 29 H 1.08996 * 109.47576 * 270.00137 * 3 2 1 30 30 H 1.09004 * 109.47127 * 30.00609 * 3 2 1 31 31 H 1.09000 * 109.46977 * 150.00014 * 3 2 1 32 32 H 1.09007 * 109.47209 * 60.00146 * 6 4 2 33 33 H 1.09002 * 109.47539 * 300.00316 * 6 4 2 34 34 H 1.09002 * 112.94686 * 339.66751 * 8 7 6 35 35 H 1.08997 * 113.77274 * 252.27024 * 9 8 7 36 36 H 1.09007 * 113.76747 * 23.66040 * 9 8 7 37 37 H 1.08993 * 109.46985 * 90.00296 * 15 14 11 38 38 H 1.08997 * 109.47347 * 210.00403 * 15 14 11 39 39 H 1.08996 * 109.46947 * 330.00291 * 15 14 11 40 40 H 1.09007 * 109.46862 * 214.99875 * 16 14 11 41 41 H 1.09002 * 109.47334 * 334.99618 * 16 14 11 42 42 H 0.97003 * 119.99872 * 179.97438 * 20 19 17 43 43 H 1.09005 * 113.76570 * 270.33847 * 25 10 9 44 44 H 1.08997 * 113.77023 * 138.93916 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1388 -1.1673 -0.0005 5 8 1.5325 -2.2176 -0.0005 6 6 3.6458 -1.1673 -0.0011 7 8 4.1221 -2.5146 -0.0010 8 6 5.5467 -2.6274 -0.0009 9 6 6.1265 -3.1875 1.3106 10 7 7.0262 -3.9851 0.4549 11 16 8.5149 -4.6792 0.6656 12 8 8.6733 -4.8721 2.0645 13 8 8.6020 -5.7366 -0.2795 14 7 9.6469 -3.5567 0.2172 15 6 10.1115 -3.4991 -1.1710 16 6 10.1838 -2.6214 1.2087 17 6 11.4717 -3.1678 1.7689 18 1 11.8520 -4.1170 1.4215 19 6 12.1645 -2.4558 2.7251 20 7 11.7011 -1.3002 3.1486 21 14 13.7612 -3.1326 3.4190 22 1 14.7441 -3.3072 2.3196 23 1 14.3060 -2.1840 4.4233 24 1 13.5034 -4.4445 4.0653 25 6 6.0664 -3.9158 -0.6641 26 1 -0.3634 -0.5139 0.8899 27 1 -0.3633 1.0277 0.0005 28 1 -0.3634 -0.5138 -0.8900 29 1 2.3791 1.5834 -1.0276 30 1 1.6084 2.0283 0.5139 31 1 3.1499 1.1383 0.5138 32 1 4.0095 -0.6537 0.8889 33 1 4.0089 -0.6532 -0.8911 34 1 6.0447 -1.7227 -0.3498 35 1 6.6423 -2.4426 1.9164 36 1 5.4187 -3.7872 1.8830 37 1 9.4772 -2.8181 -1.7384 38 1 11.1410 -3.1419 -1.1951 39 1 10.0619 -4.4945 -1.6123 40 1 10.3734 -1.6584 0.7345 41 1 9.4621 -2.4933 2.0155 42 1 12.1883 -0.7995 3.8216 43 1 5.3411 -4.7295 -0.6717 44 1 6.5344 -3.7523 -1.6348 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332075570.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:38 Heat of formation + Delta-G solvation = -128.380417 kcal Electronic energy + Delta-G solvation = -27443.824672 eV Core-core repulsion = 23331.414802 eV Total energy + Delta-G solvation = -4112.409870 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.139 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.05762 -40.31109 -38.31380 -37.40708 -37.22111 -36.88937 -36.53283 -34.50629 -30.64018 -29.66669 -28.82447 -27.93637 -27.26348 -26.76042 -26.02788 -24.20855 -22.18994 -20.53803 -19.79054 -19.04563 -18.64961 -18.22964 -18.15782 -17.75024 -17.48244 -17.18707 -16.85682 -16.52713 -15.92061 -15.45607 -15.18595 -15.08429 -14.83301 -14.69423 -14.15544 -14.07284 -13.96850 -13.91510 -13.56870 -13.48755 -13.43399 -13.34434 -13.20598 -13.05222 -12.95826 -12.86403 -12.73830 -12.57162 -12.48373 -12.36525 -12.22914 -11.94893 -11.77554 -10.85594 -10.63091 -10.58700 -10.15607 -9.80146 -9.71341 -8.21227 -6.32303 -0.48352 1.38885 1.42267 1.49226 1.53570 1.71799 2.01316 2.38807 2.53095 2.86128 3.09684 3.14900 3.46653 3.56285 3.69899 4.06609 4.12597 4.21035 4.29532 4.37979 4.44671 4.47842 4.51812 4.55112 4.63682 4.72601 4.74265 4.79794 4.84284 4.87377 4.91798 4.99756 5.07601 5.20185 5.38220 5.47918 5.50445 5.69618 5.92840 6.05202 6.10627 6.33536 6.74978 7.12199 7.36195 8.86034 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.016970 B = 0.002677 C = 0.002448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.530492 B =10457.988001 C =11434.456704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.621 5.621 3 C 0.065 3.935 4 C 0.503 3.497 5 O -0.577 6.577 6 C 0.039 3.961 7 O -0.373 6.373 8 C 0.075 3.925 9 C 0.100 3.900 10 N -1.050 6.050 11 S 2.816 3.184 12 O -1.008 7.008 13 O -1.007 7.007 14 N -0.999 5.999 15 C 0.089 3.911 16 C 0.274 3.726 17 C -0.552 4.552 18 H 0.049 0.951 19 C 0.015 3.985 20 N -0.921 5.921 21 Si 0.953 3.047 22 H -0.264 1.264 23 H -0.275 1.275 24 H -0.281 1.281 25 C 0.126 3.874 26 H 0.048 0.952 27 H 0.111 0.889 28 H 0.050 0.950 29 H 0.075 0.925 30 H 0.094 0.906 31 H 0.086 0.914 32 H 0.108 0.892 33 H 0.116 0.884 34 H 0.135 0.865 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.077 0.923 38 H 0.072 0.928 39 H 0.071 0.929 40 H 0.034 0.966 41 H 0.016 0.984 42 H 0.268 0.732 43 H 0.090 0.910 44 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.060 10.606 -10.547 24.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.355 5.355 3 C -0.077 4.077 4 C 0.291 3.709 5 O -0.457 6.457 6 C -0.040 4.040 7 O -0.290 6.290 8 C 0.014 3.986 9 C -0.025 4.025 10 N -0.894 5.894 11 S 2.826 3.174 12 O -0.992 6.992 13 O -0.991 6.991 14 N -0.841 5.841 15 C -0.056 4.056 16 C 0.150 3.850 17 C -0.592 4.592 18 H 0.067 0.933 19 C -0.185 4.185 20 N -0.560 5.560 21 Si 0.778 3.222 22 H -0.188 1.188 23 H -0.199 1.199 24 H -0.206 1.206 25 C 0.002 3.998 26 H 0.066 0.934 27 H 0.129 0.871 28 H 0.069 0.931 29 H 0.094 0.906 30 H 0.113 0.887 31 H 0.105 0.895 32 H 0.126 0.874 33 H 0.134 0.866 34 H 0.153 0.847 35 H 0.106 0.894 36 H 0.106 0.894 37 H 0.096 0.904 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.052 0.948 41 H 0.034 0.966 42 H 0.077 0.923 43 H 0.109 0.891 44 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -19.087 9.094 -10.098 23.430 hybrid contribution 0.956 -0.050 0.714 1.194 sum -18.131 9.044 -9.384 22.329 Atomic orbital electron populations 1.21740 0.78298 1.04181 1.01398 1.47891 1.07860 1.06712 1.73066 1.22240 0.98027 0.83639 1.03767 1.20884 0.90614 0.83446 0.75945 1.90713 1.71205 1.33053 1.50681 1.22596 0.90395 0.85522 1.05494 1.88049 1.20791 1.25615 1.94574 1.24404 0.80103 0.99440 0.94622 1.23442 0.90329 0.93294 0.95480 1.60375 1.31631 1.71475 1.25889 1.00583 0.72083 0.72809 0.71885 1.93555 1.85959 1.85341 1.34305 1.93488 1.87046 1.53598 1.64943 1.57548 1.55164 1.53501 1.17876 1.21584 1.01710 1.02505 0.79817 1.18620 0.92689 0.88274 0.85391 1.21811 1.08442 1.05892 1.23037 0.93294 1.25686 1.01223 0.95189 0.96379 1.69973 1.40719 1.14269 1.31075 0.85695 0.79779 0.78147 0.78619 1.18830 1.19934 1.20626 1.23115 0.88695 0.97256 0.90780 0.93363 0.87050 0.93137 0.90612 0.88729 0.89521 0.87393 0.86589 0.84740 0.89420 0.89432 0.90413 0.90961 0.91065 0.94788 0.96569 0.92291 0.89135 0.87167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.97 10.16 127.77 1.30 2.27 16 2 N -0.62 -7.99 3.27 -871.91 -2.85 -10.84 16 3 C 0.06 0.24 10.21 127.77 1.30 1.54 16 4 C 0.50 10.22 7.75 87.66 0.68 10.90 16 5 O -0.58 -18.13 16.50 16.02 0.26 -17.87 16 6 C 0.04 0.56 4.82 71.24 0.34 0.90 16 7 O -0.37 -8.15 9.90 -129.94 -1.29 -9.44 16 8 C 0.07 1.45 4.49 31.25 0.14 1.59 16 9 C 0.10 2.62 8.81 86.48 0.76 3.38 16 10 N -1.05 -32.23 4.17 -534.29 -2.23 -34.46 16 11 S 2.82 115.40 6.61 -56.49 -0.37 115.03 16 12 O -1.01 -51.01 17.08 -128.00 -2.19 -53.20 16 13 O -1.01 -42.98 16.71 -128.00 -2.14 -45.12 16 14 N -1.00 -40.78 3.23 -543.24 -1.75 -42.53 16 15 C 0.09 2.86 10.68 127.77 1.36 4.23 16 16 C 0.27 13.56 5.08 85.63 0.43 13.99 16 17 C -0.55 -31.15 9.38 25.60 0.24 -30.91 16 18 H 0.05 2.79 7.81 -2.91 -0.02 2.77 16 19 C 0.02 0.85 5.46 84.66 0.46 1.31 16 20 N -0.92 -52.86 13.29 21.45 0.28 -52.58 16 21 Si 0.95 44.40 29.54 68.60 2.03 46.43 16 22 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 23 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 24 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 25 C 0.13 2.86 8.81 86.48 0.76 3.63 16 26 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.11 0.43 7.79 -2.39 -0.02 0.41 16 28 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.08 0.11 8.14 -2.39 -0.02 0.09 16 30 H 0.09 0.04 7.92 -2.38 -0.02 0.02 16 31 H 0.09 0.16 6.44 -2.39 -0.02 0.14 16 32 H 0.11 1.04 7.40 -2.38 -0.02 1.02 16 33 H 0.12 0.89 8.11 -2.39 -0.02 0.87 16 34 H 0.14 1.79 7.89 -2.39 -0.02 1.77 16 35 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 36 H 0.09 2.31 8.14 -2.38 -0.02 2.29 16 37 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.07 2.40 8.07 -2.39 -0.02 2.38 16 39 H 0.07 2.21 7.02 -2.39 -0.02 2.19 16 40 H 0.03 1.67 8.11 -2.38 -0.02 1.65 16 41 H 0.02 0.87 7.61 -2.39 -0.02 0.85 16 42 H 0.27 14.49 8.31 -92.71 -0.77 13.72 16 43 H 0.09 2.09 8.14 -2.38 -0.02 2.07 16 44 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -85.69 384.88 -1.46 -87.16 By element: Atomic # 1 Polarization: 3.59 SS G_CDS: 0.99 Total: 4.58 kcal Atomic # 6 Polarization: 5.04 SS G_CDS: 7.79 Total: 12.83 kcal Atomic # 7 Polarization: -133.86 SS G_CDS: -6.55 Total: -140.41 kcal Atomic # 8 Polarization: -120.27 SS G_CDS: -5.35 Total: -125.62 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Atomic # 16 Polarization: 115.40 SS G_CDS: -0.37 Total: 115.03 kcal Total: -85.69 -1.46 -87.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332075570.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.222 kcal (2) G-P(sol) polarization free energy of solvation -85.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds