Wall clock time and date at job start Tue Mar 31 2020 18:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46500 * 109.47277 * 2 1 4 4 C 1.46495 * 120.00416 * 275.00382 * 3 2 1 5 5 C 1.50708 * 109.46832 * 279.07465 * 4 3 2 6 6 H 1.07999 * 119.99660 * 5.08417 * 5 4 3 7 7 C 1.37877 * 119.99752 * 185.08085 * 5 4 3 8 8 N 1.31508 * 120.00349 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 119.99725 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46852 * 60.00226 * 9 7 5 11 11 H 1.48496 * 109.46961 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47101 * 300.00291 * 9 7 5 13 13 S 1.65600 * 119.99800 * 94.99782 * 3 2 1 14 14 O 1.42098 * 106.40299 * 329.91437 * 13 3 2 15 15 O 1.42100 * 106.40518 * 196.99166 * 13 3 2 16 16 N 1.65603 * 107.21781 * 83.45583 * 13 3 2 17 17 C 1.46490 * 120.00079 * 66.57023 * 16 13 3 18 18 C 1.50700 * 109.47192 * 164.70039 * 17 16 13 19 19 O 1.21281 * 120.00156 * 0.02562 * 18 17 16 20 20 N 1.34781 * 120.00343 * 179.97438 * 18 17 16 21 21 C 1.47162 * 120.94081 * 359.97438 * 20 18 17 22 22 C 1.53296 * 108.37932 * 230.47570 * 21 20 18 23 23 O 1.42964 * 109.25907 * 307.77198 * 22 21 20 24 24 C 1.42963 * 114.16598 * 62.55772 * 23 22 21 25 25 C 1.47152 * 120.98265 * 180.02562 * 20 18 17 26 26 H 1.08997 * 109.47290 * 300.00237 * 1 2 3 27 27 H 1.09003 * 109.46793 * 59.99789 * 1 2 3 28 28 H 1.09002 * 109.47332 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47199 * 240.00257 * 2 1 3 30 30 H 1.08993 * 109.46959 * 120.00189 * 2 1 3 31 31 H 1.09002 * 109.47474 * 39.07103 * 4 3 2 32 32 H 1.08997 * 109.47444 * 159.07588 * 4 3 2 33 33 H 0.97005 * 120.00197 * 179.97438 * 8 7 5 34 34 H 0.97002 * 119.99484 * 246.57532 * 16 13 3 35 35 H 1.09000 * 109.47095 * 44.70566 * 17 16 13 36 36 H 1.09002 * 109.47595 * 284.69914 * 17 16 13 37 37 H 1.09001 * 109.64617 * 110.77768 * 21 20 18 38 38 H 1.09004 * 109.72749 * 350.21899 * 21 20 18 39 39 H 1.08995 * 109.51372 * 187.82790 * 22 21 20 40 40 H 1.08999 * 109.51136 * 67.71980 * 22 21 20 41 41 H 1.09001 * 109.51326 * 57.33689 * 24 23 22 42 42 H 1.09001 * 109.51255 * 177.44128 * 24 23 22 43 43 H 1.08998 * 109.68086 * 9.75003 * 25 20 18 44 44 H 1.08997 * 109.67722 * 249.20382 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1087 -1.2638 5 6 3.4502 1.7125 -1.9311 6 1 4.0617 0.9319 -1.5032 7 6 3.8512 2.3465 -3.0879 8 7 3.1068 3.2974 -3.6087 9 14 5.4529 1.8559 -3.9147 10 1 5.3951 0.4212 -4.2935 11 1 5.6548 2.6820 -5.1320 12 1 6.5821 2.0749 -2.9755 13 16 2.4122 2.1201 1.4287 14 8 1.5737 1.5459 2.4219 15 8 2.4563 3.5149 1.1604 16 7 3.9601 1.6672 1.8045 17 6 5.0763 2.1054 0.9630 18 6 6.3739 1.8934 1.6994 19 8 6.3671 1.4222 2.8169 20 7 7.5422 2.2265 1.1157 21 6 7.5749 2.7982 -0.2400 22 6 8.5867 2.0050 -1.0748 23 8 9.8336 1.9505 -0.3775 24 6 9.7721 1.2725 0.8796 25 6 8.8219 2.0283 1.8147 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 1.3215 1.8645 -1.9183 32 1 2.1649 3.1808 -1.0671 33 1 3.3891 3.7437 -4.4224 34 1 4.1276 1.1116 2.5818 35 1 4.9606 3.1635 0.7281 36 1 5.0840 1.5268 0.0393 37 1 7.8797 3.8435 -0.1897 38 1 6.5866 2.7248 -0.6941 39 1 8.7291 2.4960 -2.0374 40 1 8.2139 0.9931 -1.2337 41 1 9.4031 0.2580 0.7285 42 1 10.7674 1.2357 1.3225 43 1 8.6585 1.4456 2.7212 44 1 9.2531 2.9956 2.0723 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336940593.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:03 Heat of formation + Delta-G solvation = -149.634732 kcal Electronic energy + Delta-G solvation = -29255.683958 eV Core-core repulsion = 25142.352432 eV Total energy + Delta-G solvation = -4113.331526 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.139 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -40.38419 -38.42642 -36.69056 -36.09769 -35.24038 -34.87173 -34.40080 -32.83348 -31.64665 -29.97949 -28.53246 -26.80003 -26.37463 -24.10854 -23.23745 -22.18080 -21.75671 -19.43456 -19.01778 -17.69586 -16.98563 -16.83589 -16.65885 -16.38923 -16.04401 -15.86831 -15.48774 -15.24909 -14.95045 -14.79778 -14.41980 -14.00688 -13.68500 -13.33687 -13.31000 -12.95702 -12.67640 -12.54302 -12.13080 -12.06113 -11.90825 -11.73713 -11.67152 -11.51621 -11.44384 -11.33542 -11.14291 -11.06024 -10.87347 -10.58870 -10.45797 -10.33790 -10.14105 -9.94840 -9.84264 -9.18567 -8.69700 -8.62933 -8.14245 -6.23769 -4.32054 1.21497 2.56425 2.73785 3.03331 3.17951 3.20264 3.50140 3.64773 4.12265 4.20219 4.41243 4.58922 4.82864 4.90714 5.02841 5.07843 5.08410 5.09683 5.32406 5.37937 5.42606 5.54490 5.56979 5.62732 5.71530 5.75362 5.78244 5.78832 5.92619 6.10930 6.29538 6.31605 6.63793 6.67953 6.90464 7.13371 7.26286 7.30408 7.40185 7.61318 7.73492 8.03947 8.05315 8.72131 9.33048 10.83727 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.010503 B = 0.005723 C = 0.004093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2665.364214 B = 4891.666835 C = 6838.679100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.131 3.869 3 N -0.992 5.992 4 C 0.241 3.759 5 C -0.545 4.545 6 H 0.062 0.938 7 C 0.066 3.934 8 N -0.883 5.883 9 Si 0.886 3.114 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.269 1.269 13 S 2.788 3.212 14 O -0.994 6.994 15 O -0.977 6.977 16 N -1.120 6.120 17 C 0.103 3.897 18 C 0.520 3.480 19 O -0.539 6.539 20 N -0.616 5.616 21 C 0.064 3.936 22 C 0.048 3.952 23 O -0.381 6.381 24 C 0.048 3.952 25 C 0.077 3.923 26 H 0.057 0.943 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.080 0.920 30 H 0.060 0.940 31 H 0.036 0.964 32 H 0.058 0.942 33 H 0.267 0.733 34 H 0.416 0.584 35 H 0.111 0.889 36 H 0.115 0.885 37 H 0.083 0.917 38 H 0.111 0.889 39 H 0.110 0.890 40 H 0.059 0.941 41 H 0.056 0.944 42 H 0.105 0.895 43 H 0.101 0.899 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.901 -4.276 5.161 11.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.004 3.996 3 N -0.834 5.834 4 C 0.119 3.881 5 C -0.585 4.585 6 H 0.080 0.920 7 C -0.138 4.138 8 N -0.520 5.520 9 Si 0.714 3.286 10 H -0.203 1.203 11 H -0.211 1.211 12 H -0.195 1.195 13 S 2.795 3.205 14 O -0.978 6.978 15 O -0.961 6.961 16 N -0.881 5.881 17 C -0.027 4.027 18 C 0.308 3.692 19 O -0.416 6.416 20 N -0.352 5.352 21 C -0.059 4.059 22 C -0.029 4.029 23 O -0.300 6.300 24 C -0.030 4.030 25 C -0.045 4.045 26 H 0.076 0.924 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.099 0.901 30 H 0.079 0.921 31 H 0.054 0.946 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.251 0.749 35 H 0.128 0.872 36 H 0.133 0.867 37 H 0.101 0.899 38 H 0.130 0.870 39 H 0.128 0.872 40 H 0.077 0.923 41 H 0.074 0.926 42 H 0.123 0.877 43 H 0.119 0.881 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 8.446 -3.592 5.872 10.896 hybrid contribution 0.995 -0.809 -0.579 1.407 sum 9.441 -4.401 5.294 11.684 Atomic orbital electron populations 1.22211 0.96849 1.01390 1.02535 1.20971 0.93768 0.82766 1.02062 1.57767 1.78489 1.23068 1.24073 1.19238 0.97213 0.92678 0.78941 1.21488 1.06799 1.20546 1.09626 0.92014 1.24971 0.97210 0.94741 0.96879 1.69912 1.37729 1.23440 1.20909 0.86798 0.83689 0.78743 0.79413 1.20261 1.21135 1.19451 1.01732 0.72370 0.73706 0.72692 1.93564 1.64781 1.79847 1.59589 1.93576 1.86433 1.30841 1.85214 1.55856 1.23696 1.69081 1.39460 1.21202 0.83780 1.03504 0.94220 1.20833 0.85317 0.76687 0.86320 1.90637 1.86750 1.44850 1.19390 1.48094 1.05963 1.63905 1.17213 1.22656 1.02979 0.98423 0.81850 1.23050 0.83975 1.00466 0.95447 1.87960 1.31427 1.77848 1.32715 1.22968 1.00289 0.95197 0.84529 1.22268 0.83587 1.01821 0.96873 0.92406 0.92087 0.92413 0.90134 0.92110 0.94647 0.92453 0.92353 0.74851 0.87162 0.86735 0.89859 0.87040 0.87248 0.92262 0.92616 0.87724 0.88091 0.90611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.63 10.24 37.16 0.38 -2.25 16 2 C 0.13 2.18 6.03 -4.04 -0.02 2.15 16 3 N -0.99 -19.29 2.84 -115.66 -0.33 -19.62 16 4 C 0.24 5.52 5.45 -5.19 -0.03 5.49 16 5 C -0.55 -12.58 8.55 -34.44 -0.29 -12.88 16 6 H 0.06 1.34 6.48 -52.49 -0.34 1.00 16 7 C 0.07 1.59 5.46 -17.82 -0.10 1.49 16 8 N -0.88 -23.12 13.29 55.43 0.74 -22.38 16 9 Si 0.89 17.72 29.54 -169.99 -5.02 12.70 16 10 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 11 H -0.29 -5.94 7.11 56.52 0.40 -5.54 16 12 H -0.27 -4.60 6.34 56.52 0.36 -4.25 16 13 S 2.79 54.48 6.08 -107.50 -0.65 53.83 16 14 O -0.99 -20.40 17.17 -57.17 -0.98 -21.38 16 15 O -0.98 -22.09 15.96 -57.17 -0.91 -23.01 16 16 N -1.12 -19.12 5.99 -11.66 -0.07 -19.19 16 17 C 0.10 1.69 5.06 -5.20 -0.03 1.66 16 18 C 0.52 8.18 7.78 -10.98 -0.09 8.09 16 19 O -0.54 -9.52 15.20 5.56 0.08 -9.44 16 20 N -0.62 -8.25 3.02 -172.30 -0.52 -8.78 16 21 C 0.06 0.80 6.54 -3.53 -0.02 0.78 16 22 C 0.05 0.58 6.39 37.31 0.24 0.82 16 23 O -0.38 -4.60 10.74 -35.23 -0.38 -4.98 16 24 C 0.05 0.48 6.98 37.29 0.26 0.74 16 25 C 0.08 0.86 6.64 -3.56 -0.02 0.83 16 26 H 0.06 0.93 7.96 -51.93 -0.41 0.52 16 27 H 0.06 0.97 8.11 -51.93 -0.42 0.54 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.08 1.32 8.11 -51.93 -0.42 0.89 16 30 H 0.06 0.91 7.79 -51.93 -0.40 0.50 16 31 H 0.04 0.85 8.10 -51.93 -0.42 0.43 16 32 H 0.06 1.46 6.79 -51.93 -0.35 1.11 16 33 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 34 H 0.42 6.69 7.71 -34.47 -0.27 6.43 16 35 H 0.11 1.85 7.58 -51.93 -0.39 1.45 16 36 H 0.12 1.88 5.41 -51.93 -0.28 1.60 16 37 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.11 1.51 5.95 -51.93 -0.31 1.20 16 39 H 0.11 1.22 8.09 -51.93 -0.42 0.80 16 40 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 43 H 0.10 1.15 7.08 -51.93 -0.37 0.79 16 44 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 367.82 15.07 5.54 5.54 Total: -1.00 -30.49 367.82 -8.75 -39.24 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: -6.52 Total: 10.53 kcal Atomic # 6 Polarization: 6.65 SS G_CDS: 0.28 Total: 6.93 kcal Atomic # 7 Polarization: -69.79 SS G_CDS: -0.18 Total: -69.97 kcal Atomic # 8 Polarization: -56.61 SS G_CDS: -2.19 Total: -58.80 kcal Atomic # 14 Polarization: 17.72 SS G_CDS: -5.02 Total: 12.70 kcal Atomic # 16 Polarization: 54.48 SS G_CDS: -0.65 Total: 53.83 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.49 -8.75 -39.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336940593.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.392 kcal (2) G-P(sol) polarization free energy of solvation -30.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds