Wall clock time and date at job start Tue Mar 31 2020 18:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46500 * 109.47277 * 2 1 4 4 C 1.46495 * 120.00416 * 275.00382 * 3 2 1 5 5 C 1.50708 * 109.46832 * 279.07465 * 4 3 2 6 6 H 1.07999 * 119.99660 * 5.08417 * 5 4 3 7 7 C 1.37877 * 119.99752 * 185.08085 * 5 4 3 8 8 N 1.31508 * 120.00349 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 119.99725 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46852 * 60.00226 * 9 7 5 11 11 H 1.48496 * 109.46961 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47101 * 300.00291 * 9 7 5 13 13 S 1.65600 * 119.99800 * 94.99782 * 3 2 1 14 14 O 1.42098 * 106.40299 * 329.91437 * 13 3 2 15 15 O 1.42100 * 106.40518 * 196.99166 * 13 3 2 16 16 N 1.65603 * 107.21781 * 83.45583 * 13 3 2 17 17 C 1.46490 * 120.00079 * 66.57023 * 16 13 3 18 18 C 1.50700 * 109.47192 * 164.70039 * 17 16 13 19 19 O 1.21281 * 120.00156 * 0.02562 * 18 17 16 20 20 N 1.34781 * 120.00343 * 179.97438 * 18 17 16 21 21 C 1.47162 * 120.94081 * 359.97438 * 20 18 17 22 22 C 1.53296 * 108.37932 * 230.47570 * 21 20 18 23 23 O 1.42964 * 109.25907 * 307.77198 * 22 21 20 24 24 C 1.42963 * 114.16598 * 62.55772 * 23 22 21 25 25 C 1.47152 * 120.98265 * 180.02562 * 20 18 17 26 26 H 1.08997 * 109.47290 * 300.00237 * 1 2 3 27 27 H 1.09003 * 109.46793 * 59.99789 * 1 2 3 28 28 H 1.09002 * 109.47332 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47199 * 240.00257 * 2 1 3 30 30 H 1.08993 * 109.46959 * 120.00189 * 2 1 3 31 31 H 1.09002 * 109.47474 * 39.07103 * 4 3 2 32 32 H 1.08997 * 109.47444 * 159.07588 * 4 3 2 33 33 H 0.97005 * 120.00197 * 179.97438 * 8 7 5 34 34 H 0.97002 * 119.99484 * 246.57532 * 16 13 3 35 35 H 1.09000 * 109.47095 * 44.70566 * 17 16 13 36 36 H 1.09002 * 109.47595 * 284.69914 * 17 16 13 37 37 H 1.09001 * 109.64617 * 110.77768 * 21 20 18 38 38 H 1.09004 * 109.72749 * 350.21899 * 21 20 18 39 39 H 1.08995 * 109.51372 * 187.82790 * 22 21 20 40 40 H 1.08999 * 109.51136 * 67.71980 * 22 21 20 41 41 H 1.09001 * 109.51326 * 57.33689 * 24 23 22 42 42 H 1.09001 * 109.51255 * 177.44128 * 24 23 22 43 43 H 1.08998 * 109.68086 * 9.75003 * 25 20 18 44 44 H 1.08997 * 109.67722 * 249.20382 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1087 -1.2638 5 6 3.4502 1.7125 -1.9311 6 1 4.0617 0.9319 -1.5032 7 6 3.8512 2.3465 -3.0879 8 7 3.1068 3.2974 -3.6087 9 14 5.4529 1.8559 -3.9147 10 1 5.3951 0.4212 -4.2935 11 1 5.6548 2.6820 -5.1320 12 1 6.5821 2.0749 -2.9755 13 16 2.4122 2.1201 1.4287 14 8 1.5737 1.5459 2.4219 15 8 2.4563 3.5149 1.1604 16 7 3.9601 1.6672 1.8045 17 6 5.0763 2.1054 0.9630 18 6 6.3739 1.8934 1.6994 19 8 6.3671 1.4222 2.8169 20 7 7.5422 2.2265 1.1157 21 6 7.5749 2.7982 -0.2400 22 6 8.5867 2.0050 -1.0748 23 8 9.8336 1.9505 -0.3775 24 6 9.7721 1.2725 0.8796 25 6 8.8219 2.0283 1.8147 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 1.3215 1.8645 -1.9183 32 1 2.1649 3.1808 -1.0671 33 1 3.3891 3.7437 -4.4224 34 1 4.1276 1.1116 2.5818 35 1 4.9606 3.1635 0.7281 36 1 5.0840 1.5268 0.0393 37 1 7.8797 3.8435 -0.1897 38 1 6.5866 2.7248 -0.6941 39 1 8.7291 2.4960 -2.0374 40 1 8.2139 0.9931 -1.2337 41 1 9.4031 0.2580 0.7285 42 1 10.7674 1.2357 1.3225 43 1 8.6585 1.4456 2.7212 44 1 9.2531 2.9956 2.0723 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336940593.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:02 Heat of formation + Delta-G solvation = -173.588823 kcal Electronic energy + Delta-G solvation = -29256.722685 eV Core-core repulsion = 25142.352432 eV Total energy + Delta-G solvation = -4114.370254 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.139 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.48053 -39.46889 -38.35810 -37.67625 -36.92774 -35.93184 -35.78163 -34.62046 -32.54895 -31.49229 -29.64382 -28.48245 -27.58295 -25.05154 -24.90353 -23.28983 -23.16654 -20.64099 -20.40972 -19.11398 -18.57988 -18.36655 -18.00807 -17.66048 -17.25808 -17.01538 -16.92643 -16.35082 -16.13043 -15.90753 -15.81626 -15.38707 -14.93921 -14.74948 -14.64483 -14.44460 -13.84405 -13.74434 -13.65906 -13.56847 -13.33037 -13.20624 -13.14002 -13.00256 -12.85612 -12.65674 -12.57476 -12.37391 -12.19358 -12.04188 -11.79780 -11.73245 -11.56258 -11.29973 -11.07595 -10.60695 -10.46597 -9.78269 -9.72022 -8.07698 -6.23415 -0.37366 1.33757 1.47909 1.56345 1.62734 1.64271 2.02495 2.50398 2.56167 2.82327 3.21848 3.24998 3.45061 3.69259 3.91606 3.97891 4.06418 4.14471 4.20100 4.20963 4.31789 4.42074 4.46566 4.49460 4.59396 4.64423 4.73199 4.75326 4.81244 4.89335 5.01249 5.18299 5.29251 5.33269 5.44979 5.55855 5.81725 5.86482 6.01741 6.05813 6.15044 6.18529 6.85994 6.87968 7.46995 8.99964 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.010503 B = 0.005723 C = 0.004093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2665.364214 B = 4891.666835 C = 6838.679100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.121 3.879 3 N -0.993 5.993 4 C 0.255 3.745 5 C -0.543 4.543 6 H 0.078 0.922 7 C 0.015 3.985 8 N -0.928 5.928 9 Si 0.943 3.057 10 H -0.278 1.278 11 H -0.298 1.298 12 H -0.224 1.224 13 S 2.803 3.197 14 O -1.002 7.002 15 O -1.011 7.011 16 N -1.110 6.110 17 C 0.101 3.899 18 C 0.522 3.478 19 O -0.562 6.562 20 N -0.611 5.611 21 C 0.058 3.942 22 C 0.047 3.953 23 O -0.389 6.389 24 C 0.050 3.950 25 C 0.074 3.926 26 H 0.046 0.954 27 H 0.049 0.951 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.017 0.983 32 H 0.025 0.975 33 H 0.264 0.736 34 H 0.423 0.577 35 H 0.104 0.896 36 H 0.117 0.883 37 H 0.096 0.904 38 H 0.101 0.899 39 H 0.121 0.879 40 H 0.058 0.942 41 H 0.055 0.945 42 H 0.134 0.866 43 H 0.098 0.902 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.197 -5.704 5.426 13.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.004 4.004 3 N -0.834 5.834 4 C 0.131 3.869 5 C -0.581 4.581 6 H 0.096 0.904 7 C -0.185 4.185 8 N -0.567 5.567 9 Si 0.767 3.233 10 H -0.204 1.204 11 H -0.225 1.225 12 H -0.147 1.147 13 S 2.810 3.190 14 O -0.986 6.986 15 O -0.994 6.994 16 N -0.873 5.873 17 C -0.029 4.029 18 C 0.310 3.690 19 O -0.442 6.442 20 N -0.346 5.346 21 C -0.064 4.064 22 C -0.030 4.030 23 O -0.308 6.308 24 C -0.027 4.027 25 C -0.048 4.048 26 H 0.066 0.934 27 H 0.068 0.932 28 H 0.108 0.892 29 H 0.104 0.896 30 H 0.100 0.900 31 H 0.035 0.965 32 H 0.043 0.957 33 H 0.073 0.927 34 H 0.260 0.740 35 H 0.122 0.878 36 H 0.135 0.865 37 H 0.114 0.886 38 H 0.119 0.881 39 H 0.139 0.861 40 H 0.076 0.924 41 H 0.073 0.927 42 H 0.151 0.849 43 H 0.116 0.884 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 10.766 -5.040 6.164 13.390 hybrid contribution 0.252 -0.379 -0.621 0.770 sum 11.018 -5.419 5.543 13.472 Atomic orbital electron populations 1.22199 0.95968 1.03178 1.01434 1.21261 0.94641 0.81201 1.03329 1.57644 1.78990 1.24154 1.22659 1.18849 0.96900 0.91263 0.79871 1.21738 1.06641 1.20388 1.09376 0.90398 1.25823 1.00640 0.94463 0.97543 1.70078 1.39965 1.25155 1.21465 0.85869 0.81081 0.77693 0.78616 1.20397 1.22472 1.14683 1.01105 0.72637 0.72862 0.72361 1.93544 1.65538 1.79778 1.59780 1.93532 1.87048 1.33205 1.85655 1.55545 1.23038 1.68996 1.39749 1.21234 0.84181 1.03127 0.94316 1.20595 0.85631 0.76823 0.85959 1.90627 1.87080 1.46239 1.20216 1.48151 1.06078 1.62787 1.17543 1.22782 1.02802 0.99397 0.81425 1.23090 0.83801 1.00350 0.95791 1.87958 1.31285 1.78110 1.33409 1.23111 1.01474 0.94590 0.83573 1.22469 0.82622 1.02736 0.96934 0.93446 0.93217 0.89210 0.89639 0.89974 0.96520 0.95686 0.92712 0.74030 0.87843 0.86542 0.88565 0.88112 0.86115 0.92376 0.92686 0.84852 0.88417 0.89369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.02 10.24 71.98 0.74 -4.29 16 2 C 0.12 3.88 6.03 86.38 0.52 4.40 16 3 N -0.99 -38.60 2.84 -519.85 -1.47 -40.07 16 4 C 0.25 11.90 5.45 85.64 0.47 12.37 16 5 C -0.54 -24.89 8.55 25.60 0.22 -24.67 16 6 H 0.08 3.26 6.48 -2.91 -0.02 3.24 16 7 C 0.02 0.73 5.46 84.66 0.46 1.20 16 8 N -0.93 -49.67 13.29 21.45 0.28 -49.38 16 9 Si 0.94 35.21 29.54 68.60 2.03 37.23 16 10 H -0.28 -10.47 7.11 99.48 0.71 -9.76 16 11 H -0.30 -11.76 7.11 99.48 0.71 -11.05 16 12 H -0.22 -6.62 6.34 99.48 0.63 -5.99 16 13 S 2.80 109.66 6.08 -56.49 -0.34 109.32 16 14 O -1.00 -40.61 17.17 -128.00 -2.20 -42.81 16 15 O -1.01 -46.77 15.96 -128.00 -2.04 -48.81 16 16 N -1.11 -37.15 5.99 -190.81 -1.14 -38.29 16 17 C 0.10 3.24 5.06 85.64 0.43 3.67 16 18 C 0.52 15.69 7.78 87.66 0.68 16.37 16 19 O -0.56 -19.15 15.20 -3.03 -0.05 -19.20 16 20 N -0.61 -15.10 3.02 -817.41 -2.47 -17.57 16 21 C 0.06 1.33 6.54 86.35 0.56 1.89 16 22 C 0.05 0.98 6.39 72.08 0.46 1.44 16 23 O -0.39 -8.09 10.74 -148.98 -1.60 -9.69 16 24 C 0.05 0.83 6.98 72.07 0.50 1.33 16 25 C 0.07 1.46 6.64 86.34 0.57 2.03 16 26 H 0.05 1.50 7.96 -2.39 -0.02 1.48 16 27 H 0.05 1.57 8.11 -2.39 -0.02 1.55 16 28 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 29 H 0.09 2.66 8.11 -2.39 -0.02 2.64 16 30 H 0.08 2.29 7.79 -2.39 -0.02 2.27 16 31 H 0.02 0.84 8.10 -2.39 -0.02 0.82 16 32 H 0.03 1.33 6.79 -2.39 -0.02 1.32 16 33 H 0.26 13.54 8.31 -92.70 -0.77 12.77 16 34 H 0.42 13.17 7.71 -96.74 -0.75 12.43 16 35 H 0.10 3.46 7.58 -2.39 -0.02 3.45 16 36 H 0.12 3.67 5.41 -2.39 -0.01 3.66 16 37 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.10 2.52 5.95 -2.39 -0.01 2.51 16 39 H 0.12 2.23 8.09 -2.39 -0.02 2.21 16 40 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.13 1.46 8.14 -2.39 -0.02 1.45 16 43 H 0.10 2.03 7.08 -2.39 -0.02 2.01 16 44 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -65.75 367.82 -3.18 -68.93 By element: Atomic # 1 Polarization: 34.41 SS G_CDS: 0.20 Total: 34.61 kcal Atomic # 6 Polarization: 10.12 SS G_CDS: 5.62 Total: 15.75 kcal Atomic # 7 Polarization: -140.52 SS G_CDS: -4.80 Total: -145.32 kcal Atomic # 8 Polarization: -114.62 SS G_CDS: -5.89 Total: -120.51 kcal Atomic # 14 Polarization: 35.21 SS G_CDS: 2.03 Total: 37.23 kcal Atomic # 16 Polarization: 109.66 SS G_CDS: -0.34 Total: 109.32 kcal Total: -65.75 -3.18 -68.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336940593.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.660 kcal (2) G-P(sol) polarization free energy of solvation -65.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds