Wall clock time and date at job start Tue Mar 31 2020 18:51:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 113.99870 * 2 1 4 4 C 1.53001 * 109.47425 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.46696 * 65.00025 * 4 3 2 6 6 C 1.46501 * 120.00276 * 275.00043 * 5 4 3 7 7 C 1.50694 * 109.46951 * 275.00490 * 6 5 4 8 8 H 1.08004 * 120.00398 * 359.97438 * 7 6 5 9 9 C 1.37879 * 120.00001 * 180.02562 * 7 6 5 10 10 N 1.31517 * 120.00325 * 179.97438 * 9 7 6 11 11 Si 1.86800 * 119.99867 * 359.97438 * 9 7 6 12 12 H 1.48499 * 109.47104 * 90.00012 * 11 9 7 13 13 H 1.48499 * 109.47524 * 210.00286 * 11 9 7 14 14 H 1.48500 * 109.47015 * 330.00271 * 11 9 7 15 15 S 1.65602 * 119.99664 * 95.00257 * 5 4 3 16 16 O 1.42093 * 106.40775 * 336.45899 * 15 5 4 17 17 O 1.42103 * 106.39968 * 203.53519 * 15 5 4 18 18 N 1.65600 * 107.21677 * 89.99978 * 15 5 4 19 19 C 1.46499 * 119.99987 * 269.99634 * 18 15 5 20 20 C 1.46503 * 120.00153 * 90.00257 * 18 15 5 21 21 H 1.09001 * 110.53938 * 2.60658 * 20 18 15 22 22 C 1.54637 * 110.48289 * 239.99942 * 20 18 15 23 23 C 1.54480 * 101.79655 * 216.53887 * 22 20 18 24 24 N 1.46765 * 105.47306 * 25.39729 * 23 22 20 25 25 C 1.34412 * 111.30144 * 342.98128 * 24 23 22 26 26 O 1.21285 * 124.94041 * 180.39194 * 25 24 23 27 27 H 1.08999 * 109.47256 * 299.99738 * 1 2 3 28 28 H 1.08996 * 109.47302 * 59.99625 * 1 2 3 29 29 H 1.09003 * 109.46960 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47010 * 60.00103 * 3 2 1 31 31 H 1.09001 * 109.47342 * 300.00744 * 3 2 1 32 32 H 1.08994 * 109.46882 * 305.00397 * 4 3 2 33 33 H 1.08997 * 109.47142 * 185.00259 * 4 3 2 34 34 H 1.08996 * 109.46956 * 35.00226 * 6 5 4 35 35 H 1.08995 * 109.46962 * 155.00029 * 6 5 4 36 36 H 0.96999 * 119.99806 * 179.97438 * 10 9 7 37 37 H 1.09004 * 109.47289 * 270.00226 * 19 18 15 38 38 H 1.08994 * 109.46861 * 30.00293 * 19 18 15 39 39 H 1.08997 * 109.47137 * 150.00447 * 19 18 15 40 40 H 1.09002 * 110.97169 * 98.40158 * 22 20 18 41 41 H 1.09003 * 110.96908 * 334.67693 * 22 20 18 42 42 H 1.09000 * 110.24248 * 144.39497 * 23 22 20 43 43 H 1.08995 * 110.24637 * 266.30774 * 23 22 20 44 44 H 0.97001 * 124.34735 * 162.96479 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9756 0.5646 -1.2528 6 6 4.0004 -0.8949 -1.3783 7 6 5.2993 -1.4244 -0.8277 8 1 6.0333 -0.7420 -0.4249 9 6 5.5514 -2.7799 -0.8390 10 7 6.6852 -3.2420 -0.3590 11 14 4.2823 -3.9600 -1.5363 12 1 4.5308 -4.1534 -2.9875 13 1 4.3849 -5.2666 -0.8381 14 1 2.9221 -3.3981 -1.3377 15 16 4.4452 1.5133 -2.5263 16 8 3.8176 2.7744 -2.3401 17 8 4.2756 0.7260 -3.6971 18 7 6.0731 1.7734 -2.3696 19 6 6.5607 2.9283 -1.6115 20 6 7.0257 0.8487 -2.9892 21 1 6.4993 0.0764 -3.5501 22 6 7.9375 0.2112 -1.9153 23 6 9.2883 0.1231 -2.6597 24 7 9.2419 1.1762 -3.6809 25 6 7.9830 1.5981 -3.8905 26 8 7.6611 2.4554 -4.6857 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.6886 1.8463 0.8900 31 1 1.6885 1.8465 -0.8899 32 1 3.8514 0.5683 0.8408 33 1 3.9784 2.1766 0.0890 34 1 3.1678 -1.3218 -0.8192 35 1 3.9117 -1.1707 -2.4291 36 1 6.8623 -4.1957 -0.3666 37 1 6.6737 3.7810 -2.2810 38 1 5.8465 3.1751 -0.8261 39 1 7.5249 2.6880 -1.1635 40 1 7.5795 -0.7804 -1.6382 41 1 8.0163 0.8542 -1.0387 42 1 10.1120 0.3035 -1.9690 43 1 9.3973 -0.8546 -3.1289 44 1 10.0199 1.5234 -4.1448 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336942521.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:26 Heat of formation + Delta-G solvation = -136.693902 kcal Electronic energy + Delta-G solvation = -29925.183237 eV Core-core repulsion = 25812.412867 eV Total energy + Delta-G solvation = -4112.770370 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.139 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.13916 -37.85220 -36.78201 -36.25577 -35.48693 -35.29342 -35.08892 -32.57691 -29.99006 -29.79422 -27.44786 -27.20169 -25.82011 -25.22882 -22.67209 -21.86412 -21.31382 -20.21115 -18.48045 -17.58736 -17.20478 -17.12894 -16.76986 -16.13251 -15.82495 -15.66612 -15.50254 -14.98538 -14.55635 -14.19320 -14.04622 -13.78971 -13.48997 -13.45836 -13.01564 -12.70171 -12.48178 -12.39295 -12.28665 -12.10844 -12.04975 -11.82479 -11.75631 -11.39411 -11.36994 -11.21011 -11.14341 -10.93404 -10.80039 -10.62206 -10.33944 -10.15544 -9.89779 -9.53588 -9.38955 -8.94695 -8.66361 -8.56868 -8.07595 -6.17896 -4.15845 1.10403 2.77158 3.28403 3.34019 3.38110 3.43674 3.55366 4.01148 4.06664 4.37909 4.64488 4.78698 4.90897 5.12620 5.17442 5.29355 5.32958 5.34982 5.37737 5.46700 5.56847 5.60994 5.64741 5.68160 5.74362 5.82679 5.83320 5.95547 6.03297 6.22815 6.40363 6.49537 6.72321 6.82162 6.98477 7.03014 7.14392 7.25798 7.37795 7.48563 7.61338 8.41014 8.44277 8.84095 9.45426 10.92884 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.010643 B = 0.006637 C = 0.004663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2630.249076 B = 4217.888297 C = 6003.873205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.374 6.374 3 C 0.042 3.958 4 C 0.135 3.865 5 N -0.978 5.978 6 C 0.211 3.789 7 C -0.539 4.539 8 H 0.088 0.912 9 C 0.079 3.921 10 N -0.895 5.895 11 Si 0.862 3.138 12 H -0.274 1.274 13 H -0.287 1.287 14 H -0.260 1.260 15 S 2.785 3.215 16 O -0.992 6.992 17 O -0.975 6.975 18 N -0.986 5.986 19 C 0.096 3.904 20 C 0.129 3.871 21 H 0.136 0.864 22 C -0.147 4.147 23 C 0.101 3.899 24 N -0.733 5.733 25 C 0.513 3.487 26 O -0.531 6.531 27 H 0.036 0.964 28 H 0.036 0.964 29 H 0.082 0.918 30 H 0.053 0.947 31 H 0.050 0.950 32 H 0.094 0.906 33 H 0.081 0.919 34 H 0.055 0.945 35 H 0.037 0.963 36 H 0.264 0.736 37 H 0.054 0.946 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.138 0.862 41 H 0.083 0.917 42 H 0.077 0.923 43 H 0.076 0.924 44 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.393 7.394 2.082 7.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.292 6.292 3 C -0.036 4.036 4 C 0.008 3.992 5 N -0.818 5.818 6 C 0.088 3.912 7 C -0.578 4.578 8 H 0.106 0.894 9 C -0.124 4.124 10 N -0.533 5.533 11 Si 0.689 3.311 12 H -0.200 1.200 13 H -0.213 1.213 14 H -0.185 1.185 15 S 2.795 3.205 16 O -0.976 6.976 17 O -0.959 6.959 18 N -0.823 5.823 19 C -0.050 4.050 20 C 0.019 3.981 21 H 0.154 0.846 22 C -0.186 4.186 23 C -0.024 4.024 24 N -0.389 5.389 25 C 0.297 3.703 26 O -0.406 6.406 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.100 0.900 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.113 0.887 33 H 0.099 0.901 34 H 0.073 0.927 35 H 0.055 0.945 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.156 0.844 41 H 0.102 0.898 42 H 0.095 0.905 43 H 0.094 0.906 44 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -0.247 7.810 1.063 7.886 hybrid contribution -0.069 -0.605 -0.125 0.621 sum -0.316 7.205 0.938 7.273 Atomic orbital electron populations 1.22712 0.82235 1.02395 0.99360 1.88049 1.18580 1.27376 1.95220 1.23128 0.95361 0.85017 1.00123 1.21126 0.91260 0.97944 0.88840 1.57517 1.78481 1.18369 1.27479 1.19701 0.99125 0.74340 0.98068 1.21574 1.01974 0.93097 1.41178 0.89373 1.24761 0.95063 0.97981 0.94571 1.69855 1.23406 1.14138 1.45916 0.87037 0.83466 0.80873 0.79707 1.19992 1.21339 1.18471 1.01869 0.72388 0.72582 0.73687 1.93536 1.74211 1.42796 1.87025 1.93559 1.84921 1.70995 1.46413 1.57663 1.24590 1.34554 1.65504 1.21394 1.00879 0.87329 0.95389 1.21426 0.90830 0.91484 0.94392 0.84606 1.23329 0.91968 1.06397 0.96932 1.22178 0.99567 0.90735 0.89903 1.46186 1.08806 1.40826 1.43069 1.21281 0.84338 0.81995 0.82728 1.90703 1.80644 1.32148 1.37134 0.94564 0.94503 0.89951 0.92876 0.93172 0.88732 0.90061 0.92701 0.94473 0.92601 0.92702 0.91160 0.91154 0.84357 0.89833 0.90461 0.90590 0.75640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 101.05 1.11 1.50 16 2 O -0.37 -6.34 9.02 -35.23 -0.32 -6.66 16 3 C 0.04 0.64 6.28 37.16 0.23 0.88 16 4 C 0.14 2.17 5.79 -4.04 -0.02 2.15 16 5 N -0.98 -18.88 2.81 -115.67 -0.33 -19.20 16 6 C 0.21 4.69 4.34 -5.20 -0.02 4.67 16 7 C -0.54 -12.75 8.82 -34.44 -0.30 -13.05 16 8 H 0.09 2.10 6.47 -52.48 -0.34 1.76 16 9 C 0.08 1.99 5.47 -17.82 -0.10 1.89 16 10 N -0.89 -23.34 13.96 55.43 0.77 -22.57 16 11 Si 0.86 19.96 27.47 -169.99 -4.67 15.29 16 12 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 13 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 14 H -0.26 -5.96 6.54 56.52 0.37 -5.59 16 15 S 2.79 55.46 6.02 -107.50 -0.65 54.81 16 16 O -0.99 -20.05 16.18 -57.17 -0.93 -20.98 16 17 O -0.97 -22.50 15.27 -57.17 -0.87 -23.37 16 18 N -0.99 -17.24 3.22 -114.59 -0.37 -17.61 16 19 C 0.10 1.36 9.47 59.85 0.57 1.93 16 20 C 0.13 2.25 3.35 -67.91 -0.23 2.02 16 21 H 0.14 2.62 6.96 -51.93 -0.36 2.26 16 22 C -0.15 -2.25 5.99 -25.09 -0.15 -2.40 16 23 C 0.10 1.22 7.78 -3.12 -0.02 1.20 16 24 N -0.73 -9.46 6.24 -59.18 -0.37 -9.83 16 25 C 0.51 8.76 7.44 -10.84 -0.08 8.68 16 26 O -0.53 -10.90 18.02 5.55 0.10 -10.80 16 27 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.09 1.54 8.11 -51.93 -0.42 1.11 16 33 H 0.08 1.10 7.26 -51.93 -0.38 0.72 16 34 H 0.06 1.26 5.66 -51.93 -0.29 0.97 16 35 H 0.04 0.88 6.34 -51.93 -0.33 0.55 16 36 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 37 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.07 0.88 7.44 -51.93 -0.39 0.50 16 39 H 0.07 0.85 6.48 -51.93 -0.34 0.52 16 40 H 0.14 2.58 6.07 -51.93 -0.32 2.27 16 41 H 0.08 1.18 6.40 -51.93 -0.33 0.85 16 42 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.41 4.26 8.96 -40.82 -0.37 3.90 16 LS Contribution 364.31 15.07 5.49 5.49 Total: -1.00 -32.20 364.31 -7.56 -39.76 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: -6.41 Total: 6.20 kcal Atomic # 6 Polarization: 8.48 SS G_CDS: 0.98 Total: 9.47 kcal Atomic # 7 Polarization: -68.92 SS G_CDS: -0.29 Total: -69.21 kcal Atomic # 8 Polarization: -59.79 SS G_CDS: -2.02 Total: -61.81 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -4.67 Total: 15.29 kcal Atomic # 16 Polarization: 55.46 SS G_CDS: -0.65 Total: 54.81 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.20 -7.56 -39.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336942521.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.936 kcal (2) G-P(sol) polarization free energy of solvation -32.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds