Wall clock time and date at job start Tue Mar 31 2020 18:51:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 113.99870 * 2 1 4 4 C 1.53001 * 109.47425 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.46696 * 65.00025 * 4 3 2 6 6 C 1.46501 * 120.00276 * 275.00043 * 5 4 3 7 7 C 1.50694 * 109.46951 * 275.00490 * 6 5 4 8 8 H 1.08004 * 120.00398 * 359.97438 * 7 6 5 9 9 C 1.37879 * 120.00001 * 180.02562 * 7 6 5 10 10 N 1.31517 * 120.00325 * 179.97438 * 9 7 6 11 11 Si 1.86800 * 119.99867 * 359.97438 * 9 7 6 12 12 H 1.48499 * 109.47104 * 90.00012 * 11 9 7 13 13 H 1.48499 * 109.47524 * 210.00286 * 11 9 7 14 14 H 1.48500 * 109.47015 * 330.00271 * 11 9 7 15 15 S 1.65602 * 119.99664 * 95.00257 * 5 4 3 16 16 O 1.42093 * 106.40775 * 336.45899 * 15 5 4 17 17 O 1.42103 * 106.39968 * 203.53519 * 15 5 4 18 18 N 1.65600 * 107.21677 * 89.99978 * 15 5 4 19 19 C 1.46499 * 119.99987 * 269.99634 * 18 15 5 20 20 C 1.46503 * 120.00153 * 90.00257 * 18 15 5 21 21 H 1.09001 * 110.53938 * 2.60658 * 20 18 15 22 22 C 1.54637 * 110.48289 * 239.99942 * 20 18 15 23 23 C 1.54480 * 101.79655 * 216.53887 * 22 20 18 24 24 N 1.46765 * 105.47306 * 25.39729 * 23 22 20 25 25 C 1.34412 * 111.30144 * 342.98128 * 24 23 22 26 26 O 1.21285 * 124.94041 * 180.39194 * 25 24 23 27 27 H 1.08999 * 109.47256 * 299.99738 * 1 2 3 28 28 H 1.08996 * 109.47302 * 59.99625 * 1 2 3 29 29 H 1.09003 * 109.46960 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47010 * 60.00103 * 3 2 1 31 31 H 1.09001 * 109.47342 * 300.00744 * 3 2 1 32 32 H 1.08994 * 109.46882 * 305.00397 * 4 3 2 33 33 H 1.08997 * 109.47142 * 185.00259 * 4 3 2 34 34 H 1.08996 * 109.46956 * 35.00226 * 6 5 4 35 35 H 1.08995 * 109.46962 * 155.00029 * 6 5 4 36 36 H 0.96999 * 119.99806 * 179.97438 * 10 9 7 37 37 H 1.09004 * 109.47289 * 270.00226 * 19 18 15 38 38 H 1.08994 * 109.46861 * 30.00293 * 19 18 15 39 39 H 1.08997 * 109.47137 * 150.00447 * 19 18 15 40 40 H 1.09002 * 110.97169 * 98.40158 * 22 20 18 41 41 H 1.09003 * 110.96908 * 334.67693 * 22 20 18 42 42 H 1.09000 * 110.24248 * 144.39497 * 23 22 20 43 43 H 1.08995 * 110.24637 * 266.30774 * 23 22 20 44 44 H 0.97001 * 124.34735 * 162.96479 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9756 0.5646 -1.2528 6 6 4.0004 -0.8949 -1.3783 7 6 5.2993 -1.4244 -0.8277 8 1 6.0333 -0.7420 -0.4249 9 6 5.5514 -2.7799 -0.8390 10 7 6.6852 -3.2420 -0.3590 11 14 4.2823 -3.9600 -1.5363 12 1 4.5308 -4.1534 -2.9875 13 1 4.3849 -5.2666 -0.8381 14 1 2.9221 -3.3981 -1.3377 15 16 4.4452 1.5133 -2.5263 16 8 3.8176 2.7744 -2.3401 17 8 4.2756 0.7260 -3.6971 18 7 6.0731 1.7734 -2.3696 19 6 6.5607 2.9283 -1.6115 20 6 7.0257 0.8487 -2.9892 21 1 6.4993 0.0764 -3.5501 22 6 7.9375 0.2112 -1.9153 23 6 9.2883 0.1231 -2.6597 24 7 9.2419 1.1762 -3.6809 25 6 7.9830 1.5981 -3.8905 26 8 7.6611 2.4554 -4.6857 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.6886 1.8463 0.8900 31 1 1.6885 1.8465 -0.8899 32 1 3.8514 0.5683 0.8408 33 1 3.9784 2.1766 0.0890 34 1 3.1678 -1.3218 -0.8192 35 1 3.9117 -1.1707 -2.4291 36 1 6.8623 -4.1957 -0.3666 37 1 6.6737 3.7810 -2.2810 38 1 5.8465 3.1751 -0.8261 39 1 7.5249 2.6880 -1.1635 40 1 7.5795 -0.7804 -1.6382 41 1 8.0163 0.8542 -1.0387 42 1 10.1120 0.3035 -1.9690 43 1 9.3973 -0.8546 -3.1289 44 1 10.0199 1.5234 -4.1448 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336942521.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:25 Heat of formation + Delta-G solvation = -163.821196 kcal Electronic energy + Delta-G solvation = -29926.359564 eV Core-core repulsion = 25812.412867 eV Total energy + Delta-G solvation = -4113.946697 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.139 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.43504 -39.08983 -38.42155 -37.63548 -37.01024 -36.91417 -36.36299 -34.42934 -31.34582 -31.14903 -28.75941 -28.65234 -26.99421 -26.48161 -24.21633 -23.26651 -22.64393 -21.55249 -19.93161 -19.14757 -18.70179 -18.59532 -18.36826 -17.54977 -17.08951 -16.94827 -16.79452 -16.39651 -15.95870 -15.72084 -15.31143 -15.29695 -14.86317 -14.67497 -14.41874 -14.26580 -14.01219 -13.80279 -13.71758 -13.52547 -13.42914 -13.35581 -13.08361 -13.01411 -12.78008 -12.69015 -12.54259 -12.46507 -12.13707 -12.03775 -11.94526 -11.84538 -11.41395 -11.25274 -10.60470 -10.52057 -10.10544 -9.94352 -9.64945 -8.13133 -6.10618 -0.44338 1.40333 1.41509 1.47547 1.55697 1.92376 2.35293 2.46472 2.52634 2.96677 3.22415 3.29095 3.35912 3.61951 3.89602 4.06152 4.11002 4.13181 4.20531 4.39917 4.48904 4.50750 4.55712 4.58669 4.62049 4.76702 4.84464 4.86282 4.87932 4.90791 5.04129 5.24613 5.27523 5.40986 5.48287 5.53402 5.66019 5.80011 5.90136 6.00037 6.36616 6.49107 6.91977 7.21697 7.51309 8.98645 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.010643 B = 0.006637 C = 0.004663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2630.249076 B = 4217.888297 C = 6003.873205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.408 6.408 3 C 0.040 3.960 4 C 0.126 3.874 5 N -0.979 5.979 6 C 0.222 3.778 7 C -0.522 4.522 8 H 0.086 0.914 9 C 0.044 3.956 10 N -0.918 5.918 11 Si 0.894 3.106 12 H -0.280 1.280 13 H -0.286 1.286 14 H -0.258 1.258 15 S 2.792 3.208 16 O -0.996 6.996 17 O -1.014 7.014 18 N -0.987 5.987 19 C 0.087 3.913 20 C 0.122 3.878 21 H 0.109 0.891 22 C -0.139 4.139 23 C 0.106 3.894 24 N -0.708 5.708 25 C 0.512 3.488 26 O -0.571 6.571 27 H 0.060 0.940 28 H 0.040 0.960 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.041 0.959 32 H 0.093 0.907 33 H 0.109 0.891 34 H 0.049 0.951 35 H 0.018 0.982 36 H 0.263 0.737 37 H 0.050 0.950 38 H 0.088 0.912 39 H 0.094 0.906 40 H 0.105 0.895 41 H 0.099 0.901 42 H 0.115 0.885 43 H 0.081 0.919 44 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.138 8.367 3.416 9.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.327 6.327 3 C -0.038 4.038 4 C 0.000 4.000 5 N -0.819 5.819 6 C 0.097 3.903 7 C -0.561 4.561 8 H 0.104 0.896 9 C -0.157 4.157 10 N -0.558 5.558 11 Si 0.721 3.279 12 H -0.206 1.206 13 H -0.212 1.212 14 H -0.183 1.183 15 S 2.802 3.198 16 O -0.980 6.980 17 O -0.998 6.998 18 N -0.826 5.826 19 C -0.057 4.057 20 C 0.011 3.989 21 H 0.126 0.874 22 C -0.178 4.178 23 C -0.018 4.018 24 N -0.364 5.364 25 C 0.296 3.704 26 O -0.450 6.450 27 H 0.079 0.921 28 H 0.058 0.942 29 H 0.105 0.895 30 H 0.106 0.894 31 H 0.059 0.941 32 H 0.112 0.888 33 H 0.127 0.873 34 H 0.067 0.933 35 H 0.036 0.964 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.107 0.893 39 H 0.113 0.887 40 H 0.124 0.876 41 H 0.117 0.883 42 H 0.133 0.867 43 H 0.099 0.901 44 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges 0.511 8.784 2.419 9.125 hybrid contribution -0.294 -0.862 -0.514 1.046 sum 0.218 7.922 1.905 8.151 Atomic orbital electron populations 1.22899 0.80406 1.03264 1.00711 1.87989 1.20767 1.28499 1.95492 1.23194 0.94534 0.84751 1.01328 1.21459 0.92394 0.99032 0.87108 1.57394 1.78936 1.16916 1.28628 1.19391 0.98119 0.76170 0.96591 1.21705 1.02121 0.92773 1.39511 0.89565 1.25179 0.95987 0.99175 0.95326 1.69911 1.24329 1.14178 1.47416 0.86519 0.82495 0.79944 0.78908 1.20578 1.21183 1.18263 1.01458 0.72973 0.72180 0.73183 1.93518 1.74825 1.42652 1.87016 1.93504 1.85815 1.71931 1.48558 1.57485 1.23662 1.35476 1.65936 1.21672 1.02630 0.85933 0.95491 1.21448 0.91013 0.91221 0.95186 0.87372 1.23160 0.93012 1.04472 0.97172 1.22275 0.98878 0.90682 0.89934 1.46032 1.07949 1.39955 1.42490 1.21176 0.85436 0.81593 0.82243 1.90682 1.81446 1.34088 1.38818 0.92140 0.94158 0.89459 0.89364 0.94115 0.88845 0.87295 0.93259 0.96382 0.92749 0.93120 0.89339 0.88703 0.87614 0.88287 0.86700 0.90054 0.73747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.57 11.01 113.37 1.25 1.82 16 2 O -0.41 -13.39 9.02 -148.98 -1.34 -14.73 16 3 C 0.04 1.15 6.28 71.98 0.45 1.60 16 4 C 0.13 3.83 5.79 86.38 0.50 4.33 16 5 N -0.98 -37.35 2.81 -519.87 -1.46 -38.81 16 6 C 0.22 9.93 4.34 85.63 0.37 10.30 16 7 C -0.52 -24.67 8.82 25.60 0.23 -24.44 16 8 H 0.09 4.07 6.47 -2.91 -0.02 4.05 16 9 C 0.04 2.19 5.47 84.65 0.46 2.65 16 10 N -0.92 -47.85 13.96 21.45 0.30 -47.55 16 11 Si 0.89 41.07 27.47 68.60 1.88 42.95 16 12 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 13 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 14 H -0.26 -11.68 6.54 99.48 0.65 -11.03 16 15 S 2.79 111.22 6.02 -56.49 -0.34 110.88 16 16 O -1.00 -39.52 16.18 -128.00 -2.07 -41.59 16 17 O -1.01 -48.24 15.27 -128.00 -1.95 -50.19 16 18 N -0.99 -33.86 3.22 -516.44 -1.66 -35.52 16 19 C 0.09 2.30 9.47 127.77 1.21 3.51 16 20 C 0.12 4.22 3.35 45.01 0.15 4.37 16 21 H 0.11 4.34 6.96 -2.39 -0.02 4.33 16 22 C -0.14 -4.05 5.99 31.65 0.19 -3.86 16 23 C 0.11 2.28 7.78 86.83 0.68 2.96 16 24 N -0.71 -16.63 6.24 -459.74 -2.87 -19.50 16 25 C 0.51 17.05 7.44 87.92 0.65 17.70 16 26 O -0.57 -23.39 18.02 -3.04 -0.05 -23.45 16 27 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.09 1.97 8.14 -2.39 -0.02 1.96 16 30 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.09 2.88 8.11 -2.39 -0.02 2.86 16 33 H 0.11 2.66 7.26 -2.39 -0.02 2.64 16 34 H 0.05 2.28 5.66 -2.39 -0.01 2.26 16 35 H 0.02 0.88 6.34 -2.39 -0.02 0.87 16 36 H 0.26 13.29 8.31 -92.71 -0.77 12.52 16 37 H 0.05 1.39 8.14 -2.38 -0.02 1.37 16 38 H 0.09 1.99 7.44 -2.39 -0.02 1.97 16 39 H 0.09 2.02 6.48 -2.39 -0.02 2.00 16 40 H 0.11 3.91 6.07 -2.39 -0.01 3.89 16 41 H 0.10 2.54 6.40 -2.39 -0.02 2.53 16 42 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 43 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 44 H 0.42 7.65 8.96 -92.71 -0.83 6.82 16 Total: -1.00 -70.27 364.31 -3.29 -73.56 By element: Atomic # 1 Polarization: 22.88 SS G_CDS: 0.14 Total: 23.02 kcal Atomic # 6 Polarization: 14.79 SS G_CDS: 6.14 Total: 20.93 kcal Atomic # 7 Polarization: -135.68 SS G_CDS: -5.69 Total: -141.38 kcal Atomic # 8 Polarization: -124.55 SS G_CDS: -5.42 Total: -129.97 kcal Atomic # 14 Polarization: 41.07 SS G_CDS: 1.88 Total: 42.95 kcal Atomic # 16 Polarization: 111.22 SS G_CDS: -0.34 Total: 110.88 kcal Total: -70.27 -3.29 -73.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336942521.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.260 kcal (2) G-P(sol) polarization free energy of solvation -70.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds