Wall clock time and date at job start Tue Mar 31 2020 18:33:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42899 * 114.00223 * 2 1 4 4 C 1.52998 * 109.47095 * 183.99066 * 3 2 1 5 5 N 1.46503 * 109.47261 * 64.53096 * 4 3 2 6 6 C 1.46507 * 119.99608 * 284.00979 * 5 4 3 7 7 C 1.50699 * 109.46700 * 274.99827 * 6 5 4 8 8 H 1.08000 * 120.00719 * 359.97438 * 7 6 5 9 9 C 1.37878 * 119.99688 * 180.02562 * 7 6 5 10 10 N 1.31515 * 120.00332 * 180.02562 * 9 7 6 11 11 Si 1.86806 * 119.99990 * 359.97438 * 9 7 6 12 12 H 1.48505 * 109.46708 * 90.00949 * 11 9 7 13 13 H 1.48493 * 109.47174 * 210.00481 * 11 9 7 14 14 H 1.48498 * 109.47303 * 330.01115 * 11 9 7 15 15 S 1.65595 * 119.99888 * 104.00634 * 5 4 3 16 16 O 1.42097 * 106.40574 * 329.48619 * 15 5 4 17 17 O 1.42107 * 106.39786 * 196.56739 * 15 5 4 18 18 N 1.65602 * 107.21883 * 83.02797 * 15 5 4 19 19 C 1.46503 * 119.99735 * 61.80212 * 18 15 5 20 20 H 1.08999 * 110.43595 * 357.67634 * 19 18 15 21 21 C 1.54635 * 110.48427 * 120.21242 * 19 18 15 22 22 C 1.54827 * 101.60376 * 143.56942 * 21 19 18 23 23 N 1.46766 * 105.49460 * 334.56848 * 22 21 19 24 24 C 1.46499 * 124.34550 * 197.05755 * 23 22 21 25 25 C 1.34420 * 111.29997 * 17.03881 * 23 22 21 26 26 O 1.21282 * 124.93926 * 179.55595 * 25 23 22 27 27 H 1.08999 * 109.46555 * 304.21468 * 1 2 3 28 28 H 1.09003 * 109.47001 * 64.20807 * 1 2 3 29 29 H 1.08991 * 109.47444 * 184.21581 * 1 2 3 30 30 H 1.09003 * 109.46760 * 63.99537 * 3 2 1 31 31 H 1.08995 * 109.47226 * 303.99400 * 3 2 1 32 32 H 1.09006 * 109.47395 * 304.53101 * 4 3 2 33 33 H 1.09006 * 109.47474 * 184.53231 * 4 3 2 34 34 H 1.09000 * 109.47166 * 34.99828 * 6 5 4 35 35 H 1.08997 * 109.46452 * 155.00023 * 6 5 4 36 36 H 0.96993 * 120.00233 * 179.97438 * 10 9 7 37 37 H 0.96989 * 120.00226 * 241.80464 * 18 15 5 38 38 H 1.09002 * 110.97168 * 261.73209 * 21 19 18 39 39 H 1.09001 * 110.96742 * 25.49060 * 21 19 18 40 40 H 1.09005 * 110.21764 * 215.57257 * 22 21 19 41 41 H 1.08997 * 110.32725 * 93.62343 * 22 21 19 42 42 H 1.09007 * 109.46562 * 184.98857 * 24 23 22 43 43 H 1.08999 * 109.47355 * 304.98859 * 24 23 22 44 44 H 1.08999 * 109.47306 * 64.99209 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5323 1.1860 -0.1004 5 7 3.8915 0.5912 -1.3902 6 6 3.7186 -0.8474 -1.6069 7 6 4.9306 -1.5817 -1.0942 8 1 5.7480 -1.0320 -0.6516 9 6 4.9963 -2.9555 -1.1912 10 7 6.0537 -3.5966 -0.7433 11 14 3.5827 -3.9065 -1.9574 12 1 3.8112 -4.0410 -3.4185 13 1 3.5031 -5.2558 -1.3426 14 1 2.3103 -3.1785 -1.7203 15 16 4.4928 1.5451 -2.6030 16 8 3.9093 2.8292 -2.4303 17 8 4.3734 0.7920 -3.8022 18 7 6.1150 1.7273 -2.3248 19 6 6.9943 0.5554 -2.3246 20 1 6.4155 -0.3547 -2.4818 21 6 8.0853 0.6974 -3.4112 22 6 9.3056 0.0477 -2.7140 23 7 9.0586 0.1939 -1.2747 24 6 10.0871 0.0533 -0.2410 25 6 7.7674 0.4737 -1.0268 26 8 7.2913 0.6363 0.0767 27 1 -0.3632 0.5779 0.8498 28 1 -0.3633 0.4472 -0.9253 29 1 -0.3634 -1.0248 0.0755 30 1 1.7464 1.8206 0.9237 31 1 1.6332 1.8710 -0.8520 32 1 3.9012 0.5531 0.7068 33 1 3.9807 2.1762 -0.0195 34 1 2.8326 -1.1913 -1.0733 35 1 3.5995 -1.0424 -2.6727 36 1 6.0998 -4.5630 -0.8111 37 1 6.4831 2.6097 -2.1619 38 1 7.8115 0.1496 -4.3129 39 1 8.2769 1.7464 -3.6369 40 1 10.2211 0.5688 -2.9944 41 1 9.3761 -1.0071 -2.9794 42 1 9.6244 0.1217 0.7436 43 1 10.5775 -0.9145 -0.3457 44 1 10.8247 0.8482 -0.3519 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336944225.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:31 Heat of formation + Delta-G solvation = -136.180279 kcal Electronic energy + Delta-G solvation = -29853.859118 eV Core-core repulsion = 25741.111021 eV Total energy + Delta-G solvation = -4112.748097 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.139 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.02601 -37.76924 -36.71750 -35.93657 -35.39230 -35.26218 -34.60614 -32.43541 -30.79404 -29.70294 -27.16097 -26.76264 -25.77105 -25.69044 -22.56004 -21.77000 -21.42724 -19.32510 -19.04507 -17.59430 -17.07582 -16.74720 -16.42008 -15.99259 -15.85410 -15.71763 -15.53673 -14.95307 -14.55822 -14.16853 -14.00425 -13.64038 -13.39705 -13.20028 -13.04753 -12.44116 -12.35435 -12.21507 -12.21018 -12.08147 -11.97909 -11.84431 -11.78367 -11.56581 -11.32748 -11.26640 -11.12254 -10.89787 -10.83556 -10.64458 -10.31144 -10.08983 -9.99107 -9.37409 -9.26668 -8.77468 -8.51705 -8.37602 -7.96796 -6.04226 -4.02902 1.20310 3.02175 3.26509 3.35118 3.41674 3.48748 3.58761 4.08650 4.17334 4.47070 4.68238 4.74956 4.93180 5.12231 5.24533 5.27998 5.36512 5.43428 5.48294 5.55406 5.58872 5.60597 5.68543 5.71298 5.75887 5.81742 5.91049 5.92674 5.96793 6.07184 6.34203 6.44264 6.59980 6.82258 7.13127 7.17557 7.38079 7.44556 7.50370 7.59731 7.74336 8.53776 8.66096 9.07077 9.57674 11.06948 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.010540 B = 0.006376 C = 0.004976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2656.029158 B = 4390.545369 C = 5625.194812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.370 6.370 3 C 0.046 3.954 4 C 0.139 3.861 5 N -0.975 5.975 6 C 0.207 3.793 7 C -0.548 4.548 8 H 0.096 0.904 9 C 0.079 3.921 10 N -0.893 5.893 11 Si 0.864 3.136 12 H -0.275 1.275 13 H -0.288 1.288 14 H -0.259 1.259 15 S 2.783 3.217 16 O -0.998 6.998 17 O -0.976 6.976 18 N -1.109 6.109 19 C 0.120 3.880 20 H 0.158 0.842 21 C -0.143 4.143 22 C 0.107 3.893 23 N -0.627 5.627 24 C 0.100 3.900 25 C 0.521 3.479 26 O -0.506 6.506 27 H 0.035 0.965 28 H 0.036 0.964 29 H 0.081 0.919 30 H 0.052 0.948 31 H 0.049 0.951 32 H 0.092 0.908 33 H 0.083 0.917 34 H 0.063 0.937 35 H 0.037 0.963 36 H 0.262 0.738 37 H 0.408 0.592 38 H 0.098 0.902 39 H 0.083 0.917 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.081 0.919 43 H 0.060 0.940 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.961 9.451 -2.238 10.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.289 6.289 3 C -0.032 4.032 4 C 0.012 3.988 5 N -0.816 5.816 6 C 0.084 3.916 7 C -0.586 4.586 8 H 0.114 0.886 9 C -0.124 4.124 10 N -0.531 5.531 11 Si 0.691 3.309 12 H -0.201 1.201 13 H -0.214 1.214 14 H -0.184 1.184 15 S 2.791 3.209 16 O -0.982 6.982 17 O -0.960 6.960 18 N -0.865 5.865 19 C 0.009 3.991 20 H 0.175 0.825 21 C -0.183 4.183 22 C -0.017 4.017 23 N -0.364 5.364 24 C -0.043 4.043 25 C 0.306 3.694 26 O -0.379 6.379 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.100 0.900 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.110 0.890 33 H 0.101 0.899 34 H 0.081 0.919 35 H 0.055 0.945 36 H 0.072 0.928 37 H 0.240 0.760 38 H 0.116 0.884 39 H 0.102 0.898 40 H 0.092 0.908 41 H 0.094 0.906 42 H 0.099 0.901 43 H 0.079 0.921 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.355 9.360 -2.319 9.927 hybrid contribution -0.320 -0.371 0.104 0.501 sum 2.035 8.989 -2.216 9.479 Atomic orbital electron populations 1.22704 0.82496 1.02270 0.99274 1.88094 1.18380 1.27288 1.95130 1.23076 0.95367 0.85039 0.99747 1.21080 0.91822 0.98316 0.87606 1.57313 1.77243 1.20553 1.26453 1.19798 0.99414 0.74922 0.97481 1.21785 1.04029 0.92313 1.40509 0.88638 1.24818 0.95363 0.97508 0.94749 1.69913 1.28479 1.08377 1.46379 0.87020 0.84401 0.79662 0.79850 1.20059 1.21394 1.18378 1.01872 0.72544 0.72475 0.73984 1.93555 1.75785 1.41541 1.87344 1.93580 1.85677 1.72394 1.44332 1.55864 1.27360 1.13803 1.89438 1.21710 0.92856 0.91611 0.92971 0.82454 1.23094 0.93938 1.02297 0.98929 1.22084 0.98339 1.01463 0.79829 1.47973 1.09411 1.71767 1.07258 1.21454 0.90306 1.00687 0.91811 1.20904 0.82038 0.75419 0.91005 1.90690 1.72116 1.48897 1.26171 0.94646 0.94581 0.90047 0.92986 0.93313 0.89002 0.89929 0.91949 0.94495 0.92798 0.75997 0.88364 0.89819 0.90770 0.90628 0.90055 0.92140 0.92963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 101.05 1.11 1.52 16 2 O -0.37 -6.80 8.34 -35.23 -0.29 -7.09 16 3 C 0.05 0.77 6.28 37.16 0.23 1.00 16 4 C 0.14 2.55 6.00 -4.04 -0.02 2.53 16 5 N -0.97 -20.31 2.86 -115.65 -0.33 -20.64 16 6 C 0.21 4.96 4.34 -5.19 -0.02 4.94 16 7 C -0.55 -14.63 8.03 -34.44 -0.28 -14.90 16 8 H 0.10 2.69 5.21 -52.49 -0.27 2.41 16 9 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 10 N -0.89 -26.04 13.96 55.43 0.77 -25.27 16 11 Si 0.86 21.18 27.47 -169.99 -4.67 16.51 16 12 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 13 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 14 H -0.26 -6.20 6.54 56.52 0.37 -5.83 16 15 S 2.78 54.28 5.90 -107.50 -0.63 53.64 16 16 O -1.00 -19.75 17.20 -57.17 -0.98 -20.73 16 17 O -0.98 -21.46 16.36 -57.17 -0.94 -22.39 16 18 N -1.11 -18.55 5.50 -4.90 -0.03 -18.58 16 19 C 0.12 2.13 3.16 -67.94 -0.21 1.92 16 20 H 0.16 3.37 5.48 -51.93 -0.28 3.08 16 21 C -0.14 -1.86 6.91 -24.91 -0.17 -2.03 16 22 C 0.11 1.31 7.36 -2.93 -0.02 1.29 16 23 N -0.63 -9.82 3.33 -180.06 -0.60 -10.42 16 24 C 0.10 1.30 11.14 59.85 0.67 1.97 16 25 C 0.52 10.03 6.82 -10.86 -0.07 9.95 16 26 O -0.51 -11.45 16.40 5.56 0.09 -11.36 16 27 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.09 1.83 8.14 -51.93 -0.42 1.41 16 33 H 0.08 1.34 7.51 -51.93 -0.39 0.95 16 34 H 0.06 1.53 4.90 -51.93 -0.25 1.28 16 35 H 0.04 0.91 6.30 -51.93 -0.33 0.59 16 36 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 37 H 0.41 5.65 8.96 -34.47 -0.31 5.34 16 38 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.08 0.90 8.09 -51.93 -0.42 0.48 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 42 H 0.08 1.20 7.55 -51.93 -0.39 0.81 16 43 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 366.43 15.07 5.52 5.52 Total: -1.00 -35.30 366.43 -7.44 -42.74 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: -6.47 Total: 7.80 kcal Atomic # 6 Polarization: 9.16 SS G_CDS: 1.11 Total: 10.27 kcal Atomic # 7 Polarization: -74.73 SS G_CDS: -0.18 Total: -74.91 kcal Atomic # 8 Polarization: -59.46 SS G_CDS: -2.12 Total: -61.58 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.67 Total: 16.51 kcal Atomic # 16 Polarization: 54.28 SS G_CDS: -0.63 Total: 53.64 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -35.30 -7.44 -42.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336944225.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.438 kcal (2) G-P(sol) polarization free energy of solvation -35.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds