Wall clock time and date at job start Tue Mar 31 2020 18:33:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42899 * 114.00223 * 2 1 4 4 C 1.52998 * 109.47095 * 183.99066 * 3 2 1 5 5 N 1.46503 * 109.47261 * 64.53096 * 4 3 2 6 6 C 1.46507 * 119.99608 * 284.00979 * 5 4 3 7 7 C 1.50699 * 109.46700 * 274.99827 * 6 5 4 8 8 H 1.08000 * 120.00719 * 359.97438 * 7 6 5 9 9 C 1.37878 * 119.99688 * 180.02562 * 7 6 5 10 10 N 1.31515 * 120.00332 * 180.02562 * 9 7 6 11 11 Si 1.86806 * 119.99990 * 359.97438 * 9 7 6 12 12 H 1.48505 * 109.46708 * 90.00949 * 11 9 7 13 13 H 1.48493 * 109.47174 * 210.00481 * 11 9 7 14 14 H 1.48498 * 109.47303 * 330.01115 * 11 9 7 15 15 S 1.65595 * 119.99888 * 104.00634 * 5 4 3 16 16 O 1.42097 * 106.40574 * 329.48619 * 15 5 4 17 17 O 1.42107 * 106.39786 * 196.56739 * 15 5 4 18 18 N 1.65602 * 107.21883 * 83.02797 * 15 5 4 19 19 C 1.46503 * 119.99735 * 61.80212 * 18 15 5 20 20 H 1.08999 * 110.43595 * 357.67634 * 19 18 15 21 21 C 1.54635 * 110.48427 * 120.21242 * 19 18 15 22 22 C 1.54827 * 101.60376 * 143.56942 * 21 19 18 23 23 N 1.46766 * 105.49460 * 334.56848 * 22 21 19 24 24 C 1.46499 * 124.34550 * 197.05755 * 23 22 21 25 25 C 1.34420 * 111.29997 * 17.03881 * 23 22 21 26 26 O 1.21282 * 124.93926 * 179.55595 * 25 23 22 27 27 H 1.08999 * 109.46555 * 304.21468 * 1 2 3 28 28 H 1.09003 * 109.47001 * 64.20807 * 1 2 3 29 29 H 1.08991 * 109.47444 * 184.21581 * 1 2 3 30 30 H 1.09003 * 109.46760 * 63.99537 * 3 2 1 31 31 H 1.08995 * 109.47226 * 303.99400 * 3 2 1 32 32 H 1.09006 * 109.47395 * 304.53101 * 4 3 2 33 33 H 1.09006 * 109.47474 * 184.53231 * 4 3 2 34 34 H 1.09000 * 109.47166 * 34.99828 * 6 5 4 35 35 H 1.08997 * 109.46452 * 155.00023 * 6 5 4 36 36 H 0.96993 * 120.00233 * 179.97438 * 10 9 7 37 37 H 0.96989 * 120.00226 * 241.80464 * 18 15 5 38 38 H 1.09002 * 110.97168 * 261.73209 * 21 19 18 39 39 H 1.09001 * 110.96742 * 25.49060 * 21 19 18 40 40 H 1.09005 * 110.21764 * 215.57257 * 22 21 19 41 41 H 1.08997 * 110.32725 * 93.62343 * 22 21 19 42 42 H 1.09007 * 109.46562 * 184.98857 * 24 23 22 43 43 H 1.08999 * 109.47355 * 304.98859 * 24 23 22 44 44 H 1.08999 * 109.47306 * 64.99209 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5323 1.1860 -0.1004 5 7 3.8915 0.5912 -1.3902 6 6 3.7186 -0.8474 -1.6069 7 6 4.9306 -1.5817 -1.0942 8 1 5.7480 -1.0320 -0.6516 9 6 4.9963 -2.9555 -1.1912 10 7 6.0537 -3.5966 -0.7433 11 14 3.5827 -3.9065 -1.9574 12 1 3.8112 -4.0410 -3.4185 13 1 3.5031 -5.2558 -1.3426 14 1 2.3103 -3.1785 -1.7203 15 16 4.4928 1.5451 -2.6030 16 8 3.9093 2.8292 -2.4303 17 8 4.3734 0.7920 -3.8022 18 7 6.1150 1.7273 -2.3248 19 6 6.9943 0.5554 -2.3246 20 1 6.4155 -0.3547 -2.4818 21 6 8.0853 0.6974 -3.4112 22 6 9.3056 0.0477 -2.7140 23 7 9.0586 0.1939 -1.2747 24 6 10.0871 0.0533 -0.2410 25 6 7.7674 0.4737 -1.0268 26 8 7.2913 0.6363 0.0767 27 1 -0.3632 0.5779 0.8498 28 1 -0.3633 0.4472 -0.9253 29 1 -0.3634 -1.0248 0.0755 30 1 1.7464 1.8206 0.9237 31 1 1.6332 1.8710 -0.8520 32 1 3.9012 0.5531 0.7068 33 1 3.9807 2.1762 -0.0195 34 1 2.8326 -1.1913 -1.0733 35 1 3.5995 -1.0424 -2.6727 36 1 6.0998 -4.5630 -0.8111 37 1 6.4831 2.6097 -2.1619 38 1 7.8115 0.1496 -4.3129 39 1 8.2769 1.7464 -3.6369 40 1 10.2211 0.5688 -2.9944 41 1 9.3761 -1.0071 -2.9794 42 1 9.6244 0.1217 0.7436 43 1 10.5775 -0.9145 -0.3457 44 1 10.8247 0.8482 -0.3519 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336944225.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:30 Heat of formation + Delta-G solvation = -166.105898 kcal Electronic energy + Delta-G solvation = -29855.156791 eV Core-core repulsion = 25741.111021 eV Total energy + Delta-G solvation = -4114.045770 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.139 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.35438 -39.12411 -38.34231 -37.36277 -37.00513 -36.89769 -35.94281 -34.47615 -31.98386 -31.33062 -28.84272 -27.99800 -26.99536 -26.93618 -24.26718 -23.23233 -22.79448 -20.67933 -20.58788 -19.24578 -18.67646 -18.54454 -17.84860 -17.35933 -17.20768 -17.06988 -16.92524 -16.43987 -16.11918 -15.71789 -15.39661 -15.15391 -14.74361 -14.58586 -14.37094 -14.20407 -13.98402 -13.65323 -13.51679 -13.45933 -13.34790 -13.31553 -13.20403 -13.01584 -12.98850 -12.69731 -12.60780 -12.48428 -12.25238 -12.03990 -11.93627 -11.89890 -11.60611 -11.30206 -10.68424 -10.50594 -10.18811 -9.69610 -9.58627 -8.17860 -6.18901 -0.35560 1.38964 1.41105 1.52232 1.55746 1.89063 2.25345 2.42305 2.55490 2.95057 3.15598 3.38689 3.45349 3.56857 3.89694 4.04879 4.16757 4.17853 4.24779 4.39043 4.44838 4.48400 4.55697 4.58350 4.59636 4.72181 4.78997 4.83318 4.86275 4.89722 5.03808 5.04293 5.19018 5.27760 5.50649 5.57822 5.67344 5.79126 6.03435 6.17423 6.37518 6.44685 6.90696 7.27795 7.43615 8.95764 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.010540 B = 0.006376 C = 0.004976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2656.029158 B = 4390.545369 C = 5625.194812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.407 6.407 3 C 0.048 3.952 4 C 0.132 3.868 5 N -0.983 5.983 6 C 0.220 3.780 7 C -0.539 4.539 8 H 0.075 0.925 9 C 0.028 3.972 10 N -0.933 5.933 11 Si 0.915 3.085 12 H -0.269 1.269 13 H -0.286 1.286 14 H -0.250 1.250 15 S 2.797 3.203 16 O -0.999 6.999 17 O -1.001 7.001 18 N -1.096 6.096 19 C 0.114 3.886 20 H 0.119 0.881 21 C -0.135 4.135 22 C 0.104 3.896 23 N -0.626 5.626 24 C 0.094 3.906 25 C 0.507 3.493 26 O -0.555 6.555 27 H 0.059 0.941 28 H 0.044 0.956 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.053 0.947 32 H 0.068 0.932 33 H 0.102 0.898 34 H 0.059 0.941 35 H 0.030 0.970 36 H 0.263 0.737 37 H 0.423 0.577 38 H 0.107 0.893 39 H 0.114 0.886 40 H 0.121 0.879 41 H 0.073 0.927 42 H 0.055 0.945 43 H 0.072 0.928 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.253 10.776 -3.359 11.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.327 6.327 3 C -0.030 4.030 4 C 0.006 3.994 5 N -0.822 5.822 6 C 0.095 3.905 7 C -0.578 4.578 8 H 0.093 0.907 9 C -0.171 4.171 10 N -0.573 5.573 11 Si 0.739 3.261 12 H -0.194 1.194 13 H -0.212 1.212 14 H -0.174 1.174 15 S 2.805 3.195 16 O -0.983 6.983 17 O -0.985 6.985 18 N -0.856 5.856 19 C 0.002 3.998 20 H 0.137 0.863 21 C -0.174 4.174 22 C -0.019 4.019 23 N -0.361 5.361 24 C -0.047 4.047 25 C 0.292 3.708 26 O -0.432 6.432 27 H 0.078 0.922 28 H 0.062 0.938 29 H 0.104 0.896 30 H 0.102 0.898 31 H 0.071 0.929 32 H 0.087 0.913 33 H 0.120 0.880 34 H 0.077 0.923 35 H 0.048 0.952 36 H 0.072 0.928 37 H 0.258 0.742 38 H 0.125 0.875 39 H 0.133 0.867 40 H 0.139 0.861 41 H 0.092 0.908 42 H 0.074 0.926 43 H 0.091 0.909 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 2.664 10.710 -3.462 11.567 hybrid contribution -0.324 -0.717 0.492 0.928 sum 2.340 9.993 -2.970 10.684 Atomic orbital electron populations 1.22902 0.80360 1.03250 1.00774 1.88021 1.20851 1.28368 1.95445 1.23085 0.93582 0.84836 1.01501 1.21249 0.93804 0.98515 0.85824 1.57300 1.77996 1.19300 1.27633 1.19456 0.97825 0.76634 0.96595 1.21994 1.04322 0.92428 1.39085 0.90663 1.25490 0.97447 0.98560 0.95559 1.70030 1.30348 1.08569 1.48384 0.86197 0.82133 0.78457 0.79265 1.19423 1.21186 1.17407 1.01361 0.72878 0.71950 0.73307 1.93546 1.76291 1.41193 1.87281 1.93546 1.86291 1.73026 1.45594 1.55513 1.26335 1.14516 1.89201 1.21645 0.93492 0.90237 0.94389 0.86303 1.23180 0.92073 1.04588 0.97562 1.22368 0.99865 1.02089 0.77541 1.48192 1.08652 1.69939 1.09317 1.21644 0.90105 1.02887 0.90062 1.21241 0.83409 0.75377 0.90732 1.90646 1.73314 1.51458 1.27828 0.92248 0.93768 0.89588 0.89814 0.92923 0.91334 0.87977 0.92340 0.95170 0.92840 0.74189 0.87458 0.86732 0.86131 0.90837 0.92612 0.90925 0.89095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.61 11.01 113.37 1.25 1.86 16 2 O -0.41 -14.63 8.34 -148.98 -1.24 -15.88 16 3 C 0.05 1.53 6.28 71.98 0.45 1.98 16 4 C 0.13 4.88 6.00 86.38 0.52 5.40 16 5 N -0.98 -41.27 2.86 -519.81 -1.49 -42.75 16 6 C 0.22 10.67 4.34 85.63 0.37 11.04 16 7 C -0.54 -29.68 8.03 25.60 0.21 -29.48 16 8 H 0.08 4.43 5.21 -2.91 -0.02 4.41 16 9 C 0.03 1.61 5.47 84.65 0.46 2.07 16 10 N -0.93 -55.98 13.96 21.45 0.30 -55.68 16 11 Si 0.91 44.06 27.47 68.60 1.88 45.94 16 12 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16 13 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 14 H -0.25 -11.58 6.54 99.48 0.65 -10.93 16 15 S 2.80 107.97 5.90 -56.49 -0.33 107.63 16 16 O -1.00 -38.24 17.20 -128.00 -2.20 -40.45 16 17 O -1.00 -43.80 16.36 -128.00 -2.09 -45.89 16 18 N -1.10 -36.02 5.50 -169.41 -0.93 -36.95 16 19 C 0.11 4.04 3.16 44.98 0.14 4.18 16 20 H 0.12 5.24 5.48 -2.39 -0.01 5.23 16 21 C -0.13 -3.20 6.91 31.78 0.22 -2.98 16 22 C 0.10 2.27 7.36 86.95 0.64 2.91 16 23 N -0.63 -18.89 3.33 -842.19 -2.81 -21.70 16 24 C 0.09 2.35 11.14 127.77 1.42 3.77 16 25 C 0.51 19.72 6.82 87.90 0.60 20.32 16 26 O -0.56 -26.15 16.40 -3.04 -0.05 -26.20 16 27 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 30 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.07 2.83 8.14 -2.38 -0.02 2.81 16 33 H 0.10 3.28 7.51 -2.38 -0.02 3.26 16 34 H 0.06 2.90 4.90 -2.39 -0.01 2.89 16 35 H 0.03 1.51 6.30 -2.39 -0.02 1.49 16 36 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 37 H 0.42 11.16 8.96 -96.76 -0.87 10.29 16 38 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16 39 H 0.11 2.02 8.09 -2.39 -0.02 2.00 16 40 H 0.12 1.60 8.14 -2.38 -0.02 1.58 16 41 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 42 H 0.05 1.68 7.55 -2.38 -0.02 1.66 16 43 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 44 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -78.93 366.43 -2.58 -81.51 By element: Atomic # 1 Polarization: 29.21 SS G_CDS: 0.10 Total: 29.32 kcal Atomic # 6 Polarization: 14.80 SS G_CDS: 6.28 Total: 21.08 kcal Atomic # 7 Polarization: -152.15 SS G_CDS: -4.93 Total: -157.08 kcal Atomic # 8 Polarization: -122.82 SS G_CDS: -5.59 Total: -128.41 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 1.88 Total: 45.94 kcal Atomic # 16 Polarization: 107.97 SS G_CDS: -0.33 Total: 107.63 kcal Total: -78.93 -2.58 -81.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336944225.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.597 kcal (2) G-P(sol) polarization free energy of solvation -78.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds