Wall clock time and date at job start Tue Mar 31 2020 18:13:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46504 * 109.47153 * 2 1 4 4 C 1.46497 * 120.00017 * 274.00187 * 3 2 1 5 5 C 1.50710 * 109.46992 * 280.83967 * 4 3 2 6 6 H 1.07999 * 119.99596 * 3.39747 * 5 4 3 7 7 C 1.37872 * 119.99825 * 183.39577 * 5 4 3 8 8 N 1.31517 * 119.99973 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 119.99964 * 359.97438 * 7 5 4 10 10 H 1.48497 * 109.46905 * 90.00342 * 9 7 5 11 11 H 1.48503 * 109.46726 * 209.99987 * 9 7 5 12 12 H 1.48499 * 109.47386 * 329.99900 * 9 7 5 13 13 S 1.65608 * 120.00031 * 94.00274 * 3 2 1 14 14 O 1.42098 * 106.39980 * 336.31699 * 13 3 2 15 15 O 1.42099 * 106.39812 * 203.40149 * 13 3 2 16 16 N 1.65594 * 107.21705 * 89.85770 * 13 3 2 17 17 C 1.46508 * 120.00213 * 65.49012 * 16 13 3 18 18 C 1.52998 * 109.47015 * 164.36315 * 17 16 13 19 19 H 1.08997 * 110.27692 * 57.90840 * 18 17 16 20 20 C 1.54945 * 110.30516 * 180.02562 * 18 17 16 21 21 C 1.55305 * 100.94119 * 155.35841 * 20 18 17 22 22 C 1.54383 * 102.25426 * 325.86853 * 21 20 18 23 23 H 1.09004 * 109.82949 * 261.75038 * 22 21 20 24 24 C 1.50693 * 109.83302 * 140.86989 * 22 21 20 25 25 N 1.34781 * 120.00121 * 65.18322 * 24 22 21 26 26 O 1.21286 * 120.00137 * 245.18574 * 24 22 21 27 27 O 1.43235 * 107.66225 * 21.30816 * 22 21 20 28 28 H 1.09004 * 109.46882 * 305.05144 * 1 2 3 29 29 H 1.09000 * 109.47100 * 65.05463 * 1 2 3 30 30 H 1.08995 * 109.47363 * 185.05518 * 1 2 3 31 31 H 1.08993 * 109.47623 * 239.99862 * 2 1 3 32 32 H 1.09006 * 109.47173 * 119.99756 * 2 1 3 33 33 H 1.08996 * 109.47066 * 40.83522 * 4 3 2 34 34 H 1.08995 * 109.46961 * 160.84124 * 4 3 2 35 35 H 0.97000 * 119.99987 * 179.97438 * 8 7 5 36 36 H 0.96999 * 120.00236 * 245.48462 * 16 13 3 37 37 H 1.08995 * 109.46545 * 44.36115 * 17 16 13 38 38 H 1.09000 * 109.46727 * 284.36555 * 17 16 13 39 39 H 1.09010 * 111.12707 * 37.44307 * 20 18 17 40 40 H 1.09001 * 111.16225 * 273.29313 * 20 18 17 41 41 H 1.09003 * 110.85307 * 207.67787 * 21 20 18 42 42 H 1.09000 * 110.84943 * 84.05629 * 21 20 18 43 43 H 0.96998 * 119.99702 * 0.02562 * 25 24 22 44 44 H 0.96999 * 119.99742 * 179.72313 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.1790 2.1014 -1.2656 5 6 3.4608 1.6691 -1.9303 6 1 4.0647 0.8925 -1.4848 7 6 3.8621 2.2652 -3.1069 8 7 4.9804 1.8877 -3.6872 9 14 2.8170 3.6080 -3.8776 10 1 3.2435 4.9299 -3.3525 11 1 2.9876 3.5828 -5.3526 12 1 1.3890 3.3787 -3.5405 13 16 2.3888 2.1286 1.4307 14 8 1.6442 1.4579 2.4382 15 8 2.2893 3.5257 1.1911 16 7 3.9850 1.8205 1.7457 17 6 5.0232 2.3603 0.8640 18 6 6.3812 2.2753 1.5635 19 1 6.6027 1.2429 1.8341 20 6 7.4945 2.8424 0.6472 21 6 8.5584 3.2590 1.6991 22 6 7.6838 3.7150 2.8868 23 1 7.5890 4.8009 2.8807 24 6 8.3061 3.2636 4.1829 25 7 9.4980 3.7615 4.5676 26 8 7.7343 2.4522 4.8799 27 8 6.3930 3.1137 2.7321 28 1 -0.3633 0.5902 0.8413 29 1 -0.3633 0.4334 -0.9318 30 1 -0.3634 -1.0236 0.0905 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 1.3369 1.8776 -1.9204 34 1 2.2139 3.1734 -1.0717 35 1 5.2626 2.3068 -4.5152 36 1 4.2328 1.2828 2.5140 37 1 4.7980 3.4014 0.6328 38 1 5.0529 1.7813 -0.0590 39 1 7.1387 3.7060 0.0850 40 1 7.8830 2.0743 -0.0215 41 1 9.1689 4.0824 1.3284 42 1 9.1804 2.4090 1.9794 43 1 9.9550 4.4107 4.0104 44 1 9.8966 3.4739 5.4039 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336947649.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:48 Heat of formation + Delta-G solvation = -163.423550 kcal Electronic energy + Delta-G solvation = -28684.928233 eV Core-core repulsion = 24570.998779 eV Total energy + Delta-G solvation = -4113.929454 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.139 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.37457 -38.37528 -36.64526 -36.15057 -35.19008 -34.66224 -33.95424 -32.68375 -32.09033 -30.21228 -29.87926 -27.14906 -25.63623 -22.92697 -22.52705 -21.63458 -21.37885 -20.37487 -18.69318 -17.80168 -17.53025 -17.28589 -16.86966 -16.82472 -15.99251 -15.84894 -15.64829 -15.02497 -14.66995 -14.26287 -14.02306 -14.00622 -13.42945 -13.38255 -12.95192 -12.61213 -12.55973 -12.36788 -12.10334 -12.02070 -11.97142 -11.90937 -11.69023 -11.43343 -11.35971 -11.12451 -11.08873 -10.97799 -10.72961 -10.51225 -10.37246 -10.24662 -10.15016 -9.90751 -9.66398 -9.36490 -8.86544 -8.70034 -8.10867 -6.22920 -4.22720 1.31594 2.45249 3.11306 3.23228 3.30493 3.35802 3.54886 3.85398 4.21416 4.30951 4.31492 4.60967 4.67418 4.93300 5.06868 5.10651 5.13194 5.27617 5.37962 5.43563 5.54354 5.59321 5.73349 5.78908 5.88757 6.00330 6.05301 6.15849 6.28572 6.35102 6.51214 6.55095 6.58356 6.64822 6.87647 6.91708 7.12786 7.15157 7.32102 7.49623 7.62801 8.08993 8.35443 8.78786 9.38871 10.88446 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.011872 B = 0.004418 C = 0.003505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2357.980480 B = 6335.475838 C = 7987.292095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.130 3.870 3 N -0.988 5.988 4 C 0.212 3.788 5 C -0.541 4.541 6 H 0.084 0.916 7 C 0.079 3.921 8 N -0.892 5.892 9 Si 0.866 3.134 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.264 1.264 13 S 2.789 3.211 14 O -0.997 6.997 15 O -0.985 6.985 16 N -1.123 6.123 17 C 0.120 3.880 18 C 0.073 3.927 19 H 0.078 0.922 20 C -0.145 4.145 21 C -0.145 4.145 22 C 0.061 3.939 23 H 0.106 0.894 24 C 0.503 3.497 25 N -0.857 5.857 26 O -0.525 6.525 27 O -0.342 6.342 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.084 0.916 32 H 0.065 0.935 33 H 0.034 0.966 34 H 0.044 0.956 35 H 0.265 0.735 36 H 0.410 0.590 37 H 0.081 0.919 38 H 0.113 0.887 39 H 0.092 0.908 40 H 0.096 0.904 41 H 0.092 0.908 42 H 0.080 0.920 43 H 0.401 0.599 44 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.656 2.124 8.618 12.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.004 3.996 3 N -0.829 5.829 4 C 0.088 3.912 5 C -0.579 4.579 6 H 0.102 0.898 7 C -0.125 4.125 8 N -0.530 5.530 9 Si 0.693 3.307 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.188 1.188 13 S 2.796 3.204 14 O -0.981 6.981 15 O -0.968 6.968 16 N -0.883 5.883 17 C -0.006 4.006 18 C 0.015 3.985 19 H 0.096 0.904 20 C -0.183 4.183 21 C -0.183 4.183 22 C -0.001 4.001 23 H 0.124 0.876 24 C 0.287 3.713 25 N -0.423 5.423 26 O -0.399 6.399 27 O -0.260 6.260 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.102 0.898 32 H 0.084 0.916 33 H 0.052 0.948 34 H 0.062 0.938 35 H 0.075 0.925 36 H 0.243 0.757 37 H 0.100 0.900 38 H 0.131 0.869 39 H 0.110 0.890 40 H 0.114 0.886 41 H 0.110 0.890 42 H 0.098 0.902 43 H 0.229 0.771 44 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 7.384 2.281 9.261 12.062 hybrid contribution 0.660 0.463 -0.506 0.952 sum 8.044 2.743 8.754 12.201 Atomic orbital electron populations 1.22211 0.97017 1.01512 1.02170 1.20994 0.93457 0.82529 1.02613 1.57560 1.79115 1.23193 1.23034 1.19582 0.98088 0.92367 0.81181 1.21437 1.05942 1.22517 1.08033 0.89836 1.24818 0.94721 0.96436 0.96495 1.69882 1.21897 1.42323 1.18878 0.86987 0.81882 0.83088 0.78733 1.19695 1.21118 1.18827 1.01608 0.72665 0.73587 0.72498 1.93551 1.69811 1.76473 1.58311 1.93551 1.86198 1.31389 1.85667 1.55747 1.25032 1.68587 1.38885 1.21714 0.84628 1.01188 0.93057 1.23400 0.95850 0.94678 0.84584 0.90424 1.23265 0.94271 1.03136 0.97660 1.23114 0.98414 1.02526 0.94199 1.22628 0.85975 0.99217 0.92255 0.87618 1.21212 0.80913 0.81041 0.88098 1.43850 1.22755 1.48491 1.27197 1.90765 1.61575 1.32678 1.54865 1.88651 1.27479 1.63434 1.46438 0.92611 0.92369 0.92206 0.89776 0.91633 0.94808 0.93802 0.92494 0.75681 0.90021 0.86917 0.88973 0.88583 0.88981 0.90177 0.77139 0.76860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.64 10.24 37.16 0.38 -2.26 16 2 C 0.13 2.24 6.01 -4.04 -0.02 2.21 16 3 N -0.99 -19.68 2.84 -115.66 -0.33 -20.01 16 4 C 0.21 4.75 4.54 -5.19 -0.02 4.73 16 5 C -0.54 -13.25 8.50 -34.44 -0.29 -13.54 16 6 H 0.08 2.14 6.97 -52.49 -0.37 1.78 16 7 C 0.08 2.03 5.47 -17.82 -0.10 1.93 16 8 N -0.89 -24.08 13.96 55.43 0.77 -23.30 16 9 Si 0.87 19.91 27.40 -169.99 -4.66 15.25 16 10 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 11 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 12 H -0.26 -5.91 6.64 56.52 0.38 -5.53 16 13 S 2.79 56.15 6.11 -107.50 -0.66 55.49 16 14 O -1.00 -20.95 17.08 -57.17 -0.98 -21.93 16 15 O -0.98 -22.69 16.10 -57.17 -0.92 -23.61 16 16 N -1.12 -19.85 6.01 -10.61 -0.06 -19.92 16 17 C 0.12 2.10 5.87 -4.04 -0.02 2.08 16 18 C 0.07 1.08 3.52 -25.71 -0.09 0.99 16 19 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 20 C -0.15 -1.74 6.57 -24.48 -0.16 -1.90 16 21 C -0.14 -1.31 6.52 -24.78 -0.16 -1.47 16 22 C 0.06 0.70 3.94 -27.16 -0.11 0.60 16 23 H 0.11 0.99 8.14 -51.93 -0.42 0.56 16 24 C 0.50 6.07 7.30 -10.99 -0.08 5.99 16 25 N -0.86 -5.88 8.85 31.22 0.28 -5.60 16 26 O -0.52 -9.04 17.36 -14.10 -0.24 -9.28 16 27 O -0.34 -5.41 10.22 -54.88 -0.56 -5.97 16 28 H 0.05 0.91 8.09 -51.93 -0.42 0.49 16 29 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.08 1.44 8.06 -51.93 -0.42 1.02 16 32 H 0.07 1.03 7.65 -51.93 -0.40 0.63 16 33 H 0.03 0.75 7.43 -51.93 -0.39 0.37 16 34 H 0.04 1.03 6.07 -51.93 -0.32 0.72 16 35 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 36 H 0.41 6.56 8.66 -34.47 -0.30 6.26 16 37 H 0.08 1.54 7.73 -51.93 -0.40 1.13 16 38 H 0.11 2.14 5.58 -51.93 -0.29 1.85 16 39 H 0.09 1.14 8.06 -51.92 -0.42 0.72 16 40 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.08 0.69 7.84 -51.93 -0.41 0.28 16 43 H 0.40 1.41 8.83 -40.82 -0.36 1.05 16 44 H 0.40 2.37 8.93 -40.82 -0.36 2.01 16 LS Contribution 372.30 15.07 5.61 5.61 Total: -1.00 -34.74 372.30 -8.97 -43.71 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: -6.54 Total: 10.20 kcal Atomic # 6 Polarization: 0.04 SS G_CDS: -0.68 Total: -0.64 kcal Atomic # 7 Polarization: -69.49 SS G_CDS: 0.66 Total: -68.83 kcal Atomic # 8 Polarization: -58.09 SS G_CDS: -2.70 Total: -60.79 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -4.66 Total: 15.25 kcal Atomic # 16 Polarization: 56.15 SS G_CDS: -0.66 Total: 55.49 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.74 -8.97 -43.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336947649.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.713 kcal (2) G-P(sol) polarization free energy of solvation -34.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds