Wall clock time and date at job start Tue Mar 31 2020 18:13:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46503 * 109.47259 * 2 1 4 4 C 1.46503 * 119.99735 * 275.00386 * 3 2 1 5 5 C 1.50707 * 109.46654 * 280.11763 * 4 3 2 6 6 H 1.08000 * 120.00173 * 4.12218 * 5 4 3 7 7 C 1.37877 * 119.99489 * 184.12027 * 5 4 3 8 8 N 1.31510 * 120.00269 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99644 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47075 * 90.00082 * 9 7 5 11 11 H 1.48504 * 109.47296 * 209.99727 * 9 7 5 12 12 H 1.48497 * 109.47334 * 329.99910 * 9 7 5 13 13 S 1.65597 * 120.00045 * 94.99772 * 3 2 1 14 14 O 1.42095 * 106.40260 * 330.10150 * 13 3 2 15 15 O 1.42104 * 106.40097 * 197.17825 * 13 3 2 16 16 N 1.65602 * 107.21471 * 83.64298 * 13 3 2 17 17 C 1.46499 * 120.00308 * 65.45540 * 16 13 3 18 18 C 1.53000 * 109.47207 * 165.62505 * 17 16 13 19 19 H 1.08992 * 109.87412 * 59.54671 * 18 17 16 20 20 C 1.54098 * 109.87597 * 180.71494 * 18 17 16 21 21 C 1.54991 * 104.25314 * 121.58509 * 20 18 17 22 22 C 1.54992 * 102.01221 * 20.66437 * 21 20 18 23 23 H 1.09007 * 110.61941 * 81.75043 * 22 21 20 24 24 C 1.50698 * 110.62028 * 204.59541 * 22 21 20 25 25 N 1.34774 * 119.99806 * 292.81982 * 24 22 21 26 26 O 1.21279 * 120.00272 * 112.82110 * 24 22 21 27 27 O 1.43746 * 109.87398 * 298.54007 * 18 17 16 28 28 H 1.09003 * 109.47005 * 299.99938 * 1 2 3 29 29 H 1.08997 * 109.47005 * 59.99793 * 1 2 3 30 30 H 1.09001 * 109.47028 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47005 * 240.00061 * 2 1 3 32 32 H 1.08997 * 109.47005 * 120.00207 * 2 1 3 33 33 H 1.08993 * 109.47683 * 40.11576 * 4 3 2 34 34 H 1.08995 * 109.47398 * 160.12238 * 4 3 2 35 35 H 0.97010 * 119.99647 * 180.02562 * 8 7 5 36 36 H 0.97001 * 119.99594 * 245.44849 * 16 13 3 37 37 H 1.08995 * 109.47346 * 45.61732 * 17 16 13 38 38 H 1.09007 * 109.46938 * 285.62045 * 17 16 13 39 39 H 1.09003 * 110.48500 * 240.12299 * 20 18 17 40 40 H 1.09000 * 110.49283 * 2.63745 * 20 18 17 41 41 H 1.08994 * 110.84087 * 262.53411 * 21 20 18 42 42 H 1.08998 * 111.04421 * 138.88123 * 21 20 18 43 43 H 0.97002 * 119.99985 * 179.97438 * 25 24 22 44 44 H 0.97007 * 120.00262 * 359.73092 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1582 2.1087 -1.2640 5 6 3.4376 1.6934 -1.9436 6 1 4.0486 0.9132 -1.5141 7 6 3.8280 2.3094 -3.1137 8 7 3.0837 3.2590 -3.6369 9 14 5.4141 1.7951 -3.9558 10 1 5.1311 0.7002 -4.9183 11 1 5.9882 2.9564 -4.6819 12 1 6.3841 1.3200 -2.9367 13 16 2.4122 2.1202 1.4287 14 8 1.5768 1.5429 2.4226 15 8 2.4520 3.5153 1.1612 16 7 3.9619 1.6713 1.8018 17 6 5.0731 2.0929 0.9452 18 6 6.3967 1.8671 1.6787 19 1 6.5066 0.8118 1.9283 20 6 7.5715 2.3244 0.7925 21 6 8.2912 3.4040 1.6402 22 6 7.8033 3.0678 3.0724 23 1 8.3901 2.2528 3.4964 24 6 7.8736 4.2860 3.9566 25 7 9.0701 4.8116 4.2859 26 8 6.8534 4.7935 4.3720 27 8 6.4323 2.6592 2.8777 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.3119 1.8788 -1.9111 34 1 2.1835 3.1802 -1.0657 35 1 3.3582 3.6921 -4.4604 36 1 4.1339 1.1292 2.5876 37 1 4.9662 3.1509 0.7058 38 1 5.0638 1.5094 0.0245 39 1 8.2440 1.4907 0.5905 40 1 7.2024 2.7503 -0.1405 41 1 7.9732 4.4040 1.3456 42 1 9.3739 3.3035 1.5645 43 1 9.1153 5.5960 4.8548 44 1 9.8863 4.4033 3.9570 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336947652.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:59 Heat of formation + Delta-G solvation = -164.957926 kcal Electronic energy + Delta-G solvation = -28732.884337 eV Core-core repulsion = 24618.888347 eV Total energy + Delta-G solvation = -4113.995990 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.139 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.35557 -38.54077 -36.51052 -35.98188 -35.04834 -34.66471 -33.97053 -32.71454 -32.16308 -29.91853 -29.87722 -26.62347 -25.66740 -23.13977 -22.83048 -21.66740 -21.14211 -20.71039 -18.65885 -17.89306 -17.33731 -17.07725 -16.70406 -16.45593 -16.29297 -15.65720 -15.52005 -15.13755 -14.70910 -14.52047 -14.17034 -13.72730 -13.58836 -13.26819 -12.92829 -12.86012 -12.60368 -12.18516 -12.04252 -11.97563 -11.85029 -11.76787 -11.62841 -11.30126 -11.18651 -11.07030 -11.02391 -10.93476 -10.74940 -10.50285 -10.35781 -10.09004 -10.00859 -9.93339 -9.78873 -9.65331 -8.90286 -8.51895 -8.01234 -6.12579 -4.19413 1.42223 2.42638 2.93906 3.19193 3.25453 3.28249 3.64072 3.91373 4.28546 4.31303 4.34808 4.52704 4.68562 4.83335 4.90862 5.06009 5.20666 5.24893 5.32549 5.43208 5.49167 5.55938 5.78455 5.81495 5.86168 5.94507 6.06131 6.10728 6.20285 6.37249 6.45255 6.50831 6.73157 6.76366 6.78159 7.08344 7.36931 7.42748 7.53054 7.74703 7.85792 8.06625 8.15887 8.84648 9.45454 10.95373 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.010511 B = 0.004820 C = 0.003652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2663.290369 B = 5807.523832 C = 7665.990957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.132 3.868 3 N -0.994 5.994 4 C 0.242 3.758 5 C -0.539 4.539 6 H 0.064 0.936 7 C 0.065 3.935 8 N -0.886 5.886 9 Si 0.890 3.110 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.272 1.272 13 S 2.786 3.214 14 O -1.001 7.001 15 O -0.977 6.977 16 N -1.125 6.125 17 C 0.122 3.878 18 C 0.069 3.931 19 H 0.078 0.922 20 C -0.151 4.151 21 C -0.143 4.143 22 C 0.055 3.945 23 H 0.095 0.905 24 C 0.520 3.480 25 N -0.855 5.855 26 O -0.514 6.514 27 O -0.336 6.336 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.079 0.921 32 H 0.059 0.941 33 H 0.034 0.966 34 H 0.056 0.944 35 H 0.264 0.736 36 H 0.408 0.592 37 H 0.085 0.915 38 H 0.099 0.901 39 H 0.082 0.918 40 H 0.094 0.906 41 H 0.085 0.915 42 H 0.087 0.913 43 H 0.404 0.596 44 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.853 -4.716 9.687 17.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.006 3.994 3 N -0.835 5.835 4 C 0.120 3.880 5 C -0.579 4.579 6 H 0.082 0.918 7 C -0.139 4.139 8 N -0.524 5.524 9 Si 0.718 3.282 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.197 1.197 13 S 2.794 3.206 14 O -0.985 6.985 15 O -0.960 6.960 16 N -0.883 5.883 17 C -0.004 4.004 18 C 0.010 3.990 19 H 0.096 0.904 20 C -0.189 4.189 21 C -0.181 4.181 22 C -0.007 4.007 23 H 0.112 0.888 24 C 0.304 3.696 25 N -0.422 5.422 26 O -0.387 6.387 27 O -0.254 6.254 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.098 0.902 32 H 0.078 0.922 33 H 0.052 0.948 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.240 0.760 37 H 0.104 0.896 38 H 0.117 0.883 39 H 0.101 0.899 40 H 0.113 0.887 41 H 0.104 0.896 42 H 0.106 0.894 43 H 0.235 0.765 44 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 12.240 -3.624 10.157 16.313 hybrid contribution 1.914 -0.711 -0.611 2.131 sum 14.154 -4.335 9.546 17.614 Atomic orbital electron populations 1.22215 0.97020 1.01263 1.02512 1.20935 0.93649 0.82961 1.01880 1.57778 1.78687 1.22916 1.24146 1.19210 0.97138 0.92675 0.78972 1.21530 1.07388 1.20619 1.08315 0.91839 1.24962 0.97060 0.94771 0.97066 1.69937 1.37929 1.24182 1.20323 0.86641 0.83566 0.78166 0.79851 1.20657 1.21154 1.19700 1.01722 0.72600 0.73723 0.72565 1.93539 1.65557 1.79824 1.59603 1.93579 1.86464 1.30867 1.85112 1.55811 1.24801 1.69998 1.37718 1.21662 0.83437 1.02549 0.92736 1.23130 0.95793 0.95189 0.84894 0.90435 1.23004 0.96706 0.98902 1.00293 1.23139 1.01031 1.01212 0.92687 1.22960 0.86896 0.95005 0.95806 0.88768 1.20294 0.83663 0.85056 0.80624 1.43739 1.08089 1.34626 1.55699 1.90821 1.34192 1.61127 1.52607 1.89112 1.23009 1.70382 1.42914 0.92444 0.92134 0.92510 0.90238 0.92228 0.94831 0.92583 0.92570 0.75994 0.89633 0.88276 0.89912 0.88702 0.89607 0.89419 0.76464 0.77174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.78 10.24 37.16 0.38 -2.40 16 2 C 0.13 2.31 6.02 -4.04 -0.02 2.29 16 3 N -0.99 -20.64 2.84 -115.66 -0.33 -20.96 16 4 C 0.24 5.94 5.46 -5.19 -0.03 5.91 16 5 C -0.54 -13.39 8.51 -34.44 -0.29 -13.69 16 6 H 0.06 1.48 6.47 -52.49 -0.34 1.14 16 7 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 8 N -0.89 -24.74 13.29 55.43 0.74 -24.01 16 9 Si 0.89 19.43 29.54 -169.99 -5.02 14.41 16 10 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 11 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 12 H -0.27 -5.53 7.11 56.52 0.40 -5.12 16 13 S 2.79 58.67 6.07 -107.50 -0.65 58.02 16 14 O -1.00 -21.79 17.17 -57.17 -0.98 -22.77 16 15 O -0.98 -24.48 16.01 -57.17 -0.92 -25.40 16 16 N -1.12 -19.71 5.96 -10.61 -0.06 -19.77 16 17 C 0.12 2.09 5.69 -4.04 -0.02 2.07 16 18 C 0.07 0.92 3.51 -26.16 -0.09 0.83 16 19 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 20 C -0.15 -1.64 6.65 -25.11 -0.17 -1.80 16 21 C -0.14 -1.32 6.59 -24.63 -0.16 -1.48 16 22 C 0.05 0.60 3.76 -26.83 -0.10 0.50 16 23 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 24 C 0.52 6.37 7.47 -10.99 -0.08 6.29 16 25 N -0.86 -5.79 8.87 31.22 0.28 -5.51 16 26 O -0.51 -9.34 17.40 -13.51 -0.24 -9.58 16 27 O -0.34 -5.14 10.37 -54.30 -0.56 -5.71 16 28 H 0.06 0.98 7.97 -51.93 -0.41 0.57 16 29 H 0.06 1.02 8.10 -51.93 -0.42 0.60 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.08 1.36 8.09 -51.93 -0.42 0.94 16 32 H 0.06 0.92 7.78 -51.93 -0.40 0.52 16 33 H 0.03 0.86 8.10 -51.93 -0.42 0.44 16 34 H 0.06 1.54 6.77 -51.93 -0.35 1.19 16 35 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 36 H 0.41 6.15 8.65 -34.47 -0.30 5.85 16 37 H 0.09 1.68 7.75 -51.93 -0.40 1.28 16 38 H 0.10 1.72 5.86 -51.92 -0.30 1.42 16 39 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.09 1.17 7.70 -51.93 -0.40 0.77 16 41 H 0.09 0.92 8.05 -51.93 -0.42 0.50 16 42 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.40 2.40 8.93 -40.82 -0.36 2.03 16 44 H 0.40 1.26 8.83 -40.82 -0.36 0.90 16 LS Contribution 376.26 15.07 5.67 5.67 Total: -1.00 -36.73 376.26 -9.33 -46.07 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: -6.57 Total: 9.44 kcal Atomic # 6 Polarization: 0.79 SS G_CDS: -0.69 Total: 0.10 kcal Atomic # 7 Polarization: -70.87 SS G_CDS: 0.62 Total: -70.25 kcal Atomic # 8 Polarization: -60.76 SS G_CDS: -2.69 Total: -63.45 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -5.02 Total: 14.41 kcal Atomic # 16 Polarization: 58.67 SS G_CDS: -0.65 Total: 58.02 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -36.73 -9.33 -46.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336947652.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.892 kcal (2) G-P(sol) polarization free energy of solvation -36.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds