Wall clock time and date at job start Tue Mar 31 2020 18:13:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46503 * 109.47259 * 2 1 4 4 C 1.46503 * 119.99735 * 275.00386 * 3 2 1 5 5 C 1.50707 * 109.46654 * 280.11763 * 4 3 2 6 6 H 1.08000 * 120.00173 * 4.12218 * 5 4 3 7 7 C 1.37877 * 119.99489 * 184.12027 * 5 4 3 8 8 N 1.31510 * 120.00269 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99644 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47075 * 90.00082 * 9 7 5 11 11 H 1.48504 * 109.47296 * 209.99727 * 9 7 5 12 12 H 1.48497 * 109.47334 * 329.99910 * 9 7 5 13 13 S 1.65597 * 120.00045 * 94.99772 * 3 2 1 14 14 O 1.42095 * 106.40260 * 330.10150 * 13 3 2 15 15 O 1.42104 * 106.40097 * 197.17825 * 13 3 2 16 16 N 1.65602 * 107.21471 * 83.64298 * 13 3 2 17 17 C 1.46499 * 120.00308 * 65.45540 * 16 13 3 18 18 C 1.53000 * 109.47207 * 165.62505 * 17 16 13 19 19 H 1.08992 * 109.87412 * 59.54671 * 18 17 16 20 20 C 1.54098 * 109.87597 * 180.71494 * 18 17 16 21 21 C 1.54991 * 104.25314 * 121.58509 * 20 18 17 22 22 C 1.54992 * 102.01221 * 20.66437 * 21 20 18 23 23 H 1.09007 * 110.61941 * 81.75043 * 22 21 20 24 24 C 1.50698 * 110.62028 * 204.59541 * 22 21 20 25 25 N 1.34774 * 119.99806 * 292.81982 * 24 22 21 26 26 O 1.21279 * 120.00272 * 112.82110 * 24 22 21 27 27 O 1.43746 * 109.87398 * 298.54007 * 18 17 16 28 28 H 1.09003 * 109.47005 * 299.99938 * 1 2 3 29 29 H 1.08997 * 109.47005 * 59.99793 * 1 2 3 30 30 H 1.09001 * 109.47028 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47005 * 240.00061 * 2 1 3 32 32 H 1.08997 * 109.47005 * 120.00207 * 2 1 3 33 33 H 1.08993 * 109.47683 * 40.11576 * 4 3 2 34 34 H 1.08995 * 109.47398 * 160.12238 * 4 3 2 35 35 H 0.97010 * 119.99647 * 180.02562 * 8 7 5 36 36 H 0.97001 * 119.99594 * 245.44849 * 16 13 3 37 37 H 1.08995 * 109.47346 * 45.61732 * 17 16 13 38 38 H 1.09007 * 109.46938 * 285.62045 * 17 16 13 39 39 H 1.09003 * 110.48500 * 240.12299 * 20 18 17 40 40 H 1.09000 * 110.49283 * 2.63745 * 20 18 17 41 41 H 1.08994 * 110.84087 * 262.53411 * 21 20 18 42 42 H 1.08998 * 111.04421 * 138.88123 * 21 20 18 43 43 H 0.97002 * 119.99985 * 179.97438 * 25 24 22 44 44 H 0.97007 * 120.00262 * 359.73092 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1582 2.1087 -1.2640 5 6 3.4376 1.6934 -1.9436 6 1 4.0486 0.9132 -1.5141 7 6 3.8280 2.3094 -3.1137 8 7 3.0837 3.2590 -3.6369 9 14 5.4141 1.7951 -3.9558 10 1 5.1311 0.7002 -4.9183 11 1 5.9882 2.9564 -4.6819 12 1 6.3841 1.3200 -2.9367 13 16 2.4122 2.1202 1.4287 14 8 1.5768 1.5429 2.4226 15 8 2.4520 3.5153 1.1612 16 7 3.9619 1.6713 1.8018 17 6 5.0731 2.0929 0.9452 18 6 6.3967 1.8671 1.6787 19 1 6.5066 0.8118 1.9283 20 6 7.5715 2.3244 0.7925 21 6 8.2912 3.4040 1.6402 22 6 7.8033 3.0678 3.0724 23 1 8.3901 2.2528 3.4964 24 6 7.8736 4.2860 3.9566 25 7 9.0701 4.8116 4.2859 26 8 6.8534 4.7935 4.3720 27 8 6.4323 2.6592 2.8777 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.3119 1.8788 -1.9111 34 1 2.1835 3.1802 -1.0657 35 1 3.3582 3.6921 -4.4604 36 1 4.1339 1.1292 2.5876 37 1 4.9662 3.1509 0.7058 38 1 5.0638 1.5094 0.0245 39 1 8.2440 1.4907 0.5905 40 1 7.2024 2.7503 -0.1405 41 1 7.9732 4.4040 1.3456 42 1 9.3739 3.3035 1.5645 43 1 9.1153 5.5960 4.8548 44 1 9.8863 4.4033 3.9570 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336947652.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:58 Heat of formation + Delta-G solvation = -197.405010 kcal Electronic energy + Delta-G solvation = -28734.291348 eV Core-core repulsion = 24618.888347 eV Total energy + Delta-G solvation = -4115.403001 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.139 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.28199 -39.54474 -38.31194 -37.67032 -36.88221 -36.03878 -34.83444 -34.63608 -33.04557 -31.49471 -30.93892 -28.48387 -26.78030 -24.93131 -23.79251 -23.26810 -22.17209 -21.55001 -20.28971 -18.82902 -18.63661 -18.52960 -18.32505 -18.02668 -17.36441 -17.14500 -16.75576 -16.44480 -16.16556 -15.62150 -15.47202 -15.14189 -14.80758 -14.61689 -14.45970 -14.21480 -13.87849 -13.74695 -13.63379 -13.47071 -13.31089 -13.15396 -13.00519 -12.84555 -12.67369 -12.63062 -12.60261 -12.26042 -12.09785 -12.03281 -11.71199 -11.64935 -11.55431 -11.09126 -10.73430 -10.62137 -10.53910 -10.38114 -9.76674 -8.10661 -6.25374 -0.28513 1.48410 1.50025 1.52651 1.60251 2.03284 2.16626 2.48158 2.62261 3.06093 3.21759 3.42629 3.53804 3.75562 3.92746 3.97759 4.02187 4.10867 4.23326 4.35206 4.45695 4.46753 4.52660 4.69852 4.76123 4.82994 4.91156 4.98742 5.00701 5.06466 5.17541 5.23989 5.30888 5.43533 5.55208 5.77305 5.81660 5.92259 5.94379 6.15830 6.25280 6.45154 6.86454 7.32174 7.44629 8.98057 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.010511 B = 0.004820 C = 0.003652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2663.290369 B = 5807.523832 C = 7665.990957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.122 3.878 3 N -0.994 5.994 4 C 0.257 3.743 5 C -0.537 4.537 6 H 0.083 0.917 7 C 0.007 3.993 8 N -0.933 5.933 9 Si 0.958 3.042 10 H -0.277 1.277 11 H -0.293 1.293 12 H -0.240 1.240 13 S 2.796 3.204 14 O -1.009 7.009 15 O -1.024 7.024 16 N -1.110 6.110 17 C 0.119 3.881 18 C 0.071 3.929 19 H 0.110 0.890 20 C -0.151 4.151 21 C -0.135 4.135 22 C 0.050 3.950 23 H 0.139 0.861 24 C 0.514 3.486 25 N -0.825 5.825 26 O -0.589 6.589 27 O -0.378 6.378 28 H 0.044 0.956 29 H 0.046 0.954 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.016 0.984 34 H 0.015 0.985 35 H 0.263 0.737 36 H 0.422 0.578 37 H 0.046 0.954 38 H 0.098 0.902 39 H 0.121 0.879 40 H 0.073 0.927 41 H 0.060 0.940 42 H 0.137 0.863 43 H 0.410 0.590 44 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.595 -7.620 10.115 21.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.003 4.003 3 N -0.835 5.835 4 C 0.133 3.867 5 C -0.576 4.576 6 H 0.101 0.899 7 C -0.192 4.192 8 N -0.573 5.573 9 Si 0.782 3.218 10 H -0.203 1.203 11 H -0.219 1.219 12 H -0.163 1.163 13 S 2.805 3.195 14 O -0.993 6.993 15 O -1.008 7.008 16 N -0.872 5.872 17 C -0.007 4.007 18 C 0.012 3.988 19 H 0.128 0.872 20 C -0.189 4.189 21 C -0.173 4.173 22 C -0.011 4.011 23 H 0.156 0.844 24 C 0.298 3.702 25 N -0.392 5.392 26 O -0.468 6.468 27 O -0.297 6.297 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.111 0.889 31 H 0.105 0.895 32 H 0.104 0.896 33 H 0.034 0.966 34 H 0.033 0.967 35 H 0.072 0.928 36 H 0.257 0.743 37 H 0.065 0.935 38 H 0.116 0.884 39 H 0.139 0.861 40 H 0.092 0.908 41 H 0.079 0.921 42 H 0.155 0.845 43 H 0.242 0.758 44 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 16.050 -6.570 10.620 20.336 hybrid contribution 0.749 0.207 -0.673 1.028 sum 16.799 -6.363 9.947 20.534 Atomic orbital electron populations 1.22210 0.96224 1.03216 1.01209 1.21267 0.94464 0.81077 1.03484 1.57622 1.79303 1.24183 1.22413 1.18776 0.96915 0.90900 0.80085 1.21822 1.07222 1.20516 1.08022 0.89889 1.25916 1.00714 0.94608 0.97944 1.70109 1.40290 1.25945 1.20936 0.85556 0.79690 0.77417 0.79147 1.20321 1.21925 1.16275 1.01167 0.73265 0.72731 0.72362 1.93515 1.66465 1.79591 1.59681 1.93522 1.87333 1.34186 1.85749 1.55425 1.23610 1.69881 1.38312 1.21712 0.85477 1.00048 0.93449 1.23223 0.94082 0.96714 0.84799 0.87244 1.23073 0.96367 1.00539 0.98920 1.23180 1.03729 0.99407 0.90982 1.23337 0.85546 0.95559 0.96634 0.84364 1.20769 0.83881 0.85290 0.80219 1.43508 1.07477 1.34014 1.54166 1.90792 1.36904 1.63386 1.55767 1.89071 1.26127 1.71047 1.43451 0.93683 0.93500 0.88924 0.89509 0.89595 0.96629 0.96679 0.92794 0.74286 0.93529 0.88444 0.86054 0.90823 0.92090 0.84493 0.75769 0.74542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.39 10.24 71.98 0.74 -4.65 16 2 C 0.12 4.14 6.02 86.38 0.52 4.66 16 3 N -0.99 -41.99 2.84 -519.83 -1.48 -43.46 16 4 C 0.26 13.14 5.46 85.63 0.47 13.61 16 5 C -0.54 -26.86 8.51 25.60 0.22 -26.65 16 6 H 0.08 3.74 6.47 -2.91 -0.02 3.72 16 7 C 0.01 0.38 5.46 84.66 0.46 0.84 16 8 N -0.93 -53.94 13.29 21.45 0.28 -53.66 16 9 Si 0.96 39.16 29.54 68.60 2.03 41.19 16 10 H -0.28 -11.18 7.11 99.48 0.71 -10.47 16 11 H -0.29 -12.27 7.11 99.48 0.71 -11.56 16 12 H -0.24 -8.48 7.11 99.48 0.71 -7.78 16 13 S 2.80 121.04 6.07 -56.49 -0.34 120.69 16 14 O -1.01 -44.11 17.17 -128.00 -2.20 -46.31 16 15 O -1.02 -54.57 16.01 -128.00 -2.05 -56.62 16 16 N -1.11 -38.78 5.96 -187.49 -1.12 -39.90 16 17 C 0.12 4.06 5.69 86.38 0.49 4.56 16 18 C 0.07 1.73 3.51 30.97 0.11 1.84 16 19 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 20 C -0.15 -2.77 6.65 31.65 0.21 -2.56 16 21 C -0.14 -2.06 6.59 31.96 0.21 -1.85 16 22 C 0.05 0.95 3.76 30.53 0.11 1.06 16 23 H 0.14 1.41 8.14 -2.38 -0.02 1.39 16 24 C 0.51 12.01 7.47 87.66 0.65 12.67 16 25 N -0.83 -9.14 8.87 -173.54 -1.54 -10.68 16 26 O -0.59 -22.10 17.40 15.20 0.26 -21.84 16 27 O -0.38 -11.16 10.37 -130.75 -1.36 -12.51 16 28 H 0.04 1.53 7.97 -2.39 -0.02 1.51 16 29 H 0.05 1.59 8.10 -2.39 -0.02 1.57 16 30 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 31 H 0.09 2.83 8.09 -2.39 -0.02 2.81 16 32 H 0.09 2.46 7.78 -2.39 -0.02 2.44 16 33 H 0.02 0.84 8.10 -2.39 -0.02 0.83 16 34 H 0.02 0.90 6.77 -2.39 -0.02 0.88 16 35 H 0.26 14.44 8.31 -92.70 -0.77 13.67 16 36 H 0.42 12.27 8.65 -96.75 -0.84 11.43 16 37 H 0.05 1.94 7.75 -2.39 -0.02 1.92 16 38 H 0.10 3.30 5.86 -2.38 -0.01 3.29 16 39 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.07 1.68 7.70 -2.39 -0.02 1.67 16 41 H 0.06 1.24 8.05 -2.39 -0.02 1.22 16 42 H 0.14 0.72 8.14 -2.39 -0.02 0.70 16 43 H 0.41 4.11 8.93 -92.71 -0.83 3.28 16 44 H 0.42 0.94 8.83 -92.70 -0.82 0.12 16 Total: -1.00 -86.68 376.26 -4.74 -91.42 By element: Atomic # 1 Polarization: 29.57 SS G_CDS: -1.43 Total: 28.13 kcal Atomic # 6 Polarization: -0.66 SS G_CDS: 4.20 Total: 3.54 kcal Atomic # 7 Polarization: -143.85 SS G_CDS: -3.85 Total: -147.70 kcal Atomic # 8 Polarization: -131.94 SS G_CDS: -5.34 Total: -137.28 kcal Atomic # 14 Polarization: 39.16 SS G_CDS: 2.03 Total: 41.19 kcal Atomic # 16 Polarization: 121.04 SS G_CDS: -0.34 Total: 120.69 kcal Total: -86.68 -4.74 -91.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336947652.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.981 kcal (2) G-P(sol) polarization free energy of solvation -86.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds