Wall clock time and date at job start Tue Mar 31 2020 18:13:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.46840 * 2 1 4 4 C 1.46502 * 120.00345 * 275.00289 * 3 2 1 5 5 C 1.50697 * 109.47079 * 85.00200 * 4 3 2 6 6 H 1.08000 * 119.99936 * 359.97438 * 5 4 3 7 7 C 1.37875 * 119.99754 * 180.02562 * 5 4 3 8 8 N 1.31512 * 120.00085 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99983 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.46900 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.47397 * 119.99414 * 9 7 5 12 12 H 1.48500 * 109.47374 * 239.99779 * 9 7 5 13 13 S 1.65605 * 119.99782 * 95.00317 * 3 2 1 14 14 O 1.42099 * 106.40321 * 203.53813 * 13 3 2 15 15 O 1.42097 * 106.40157 * 336.45932 * 13 3 2 16 16 N 1.65600 * 107.21849 * 90.00219 * 13 3 2 17 17 C 1.47156 * 120.97816 * 269.71626 * 16 13 3 18 18 C 1.53712 * 108.16085 * 129.43247 * 17 16 13 19 19 O 1.42956 * 109.14746 * 52.53619 * 18 17 16 20 20 C 1.42959 * 114.16882 * 297.28677 * 19 18 17 21 21 H 1.08991 * 109.51793 * 302.65814 * 20 19 18 22 22 C 1.50704 * 109.55383 * 182.52816 * 20 19 18 23 23 O 1.21274 * 120.00392 * 355.22964 * 22 20 19 24 24 N 1.34781 * 119.99637 * 175.22860 * 22 20 19 25 25 C 1.46503 * 119.99796 * 179.97438 * 24 22 20 26 26 C 1.47149 * 120.98791 * 89.99669 * 16 13 3 27 27 H 1.08992 * 109.47399 * 59.99666 * 1 2 3 28 28 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47194 * 299.99493 * 1 2 3 30 30 H 1.09002 * 109.47398 * 120.00326 * 2 1 3 31 31 H 1.09001 * 109.47194 * 240.00507 * 2 1 3 32 32 H 1.08998 * 109.47222 * 205.00373 * 4 3 2 33 33 H 1.09000 * 109.46517 * 324.99960 * 4 3 2 34 34 H 0.97003 * 120.00108 * 179.97438 * 8 7 5 35 35 H 1.08994 * 109.68368 * 249.20818 * 17 16 13 36 36 H 1.08998 * 109.68439 * 9.76494 * 17 16 13 37 37 H 1.09006 * 109.65979 * 292.56972 * 18 17 16 38 38 H 1.08998 * 109.44367 * 172.37638 * 18 17 16 39 39 H 0.96998 * 119.99852 * 0.02562 * 24 22 20 40 40 H 1.08995 * 109.46739 * 179.97438 * 25 24 22 41 41 H 1.08993 * 109.47395 * 300.00630 * 25 24 22 42 42 H 1.09007 * 109.46365 * 60.00859 * 25 24 22 43 43 H 1.08997 * 109.67760 * 350.23815 * 26 16 13 44 44 H 1.09003 * 109.68136 * 110.74944 * 26 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1581 2.1088 -1.2639 5 6 0.8359 2.7289 -1.6354 6 1 -0.0229 2.5942 -0.9945 7 6 0.7222 3.4674 -2.7942 8 7 1.7678 3.6310 -3.5749 9 14 -0.9169 4.2355 -3.2552 10 1 -1.9275 3.9050 -2.2184 11 1 -0.7646 5.7099 -3.3463 12 1 -1.3621 3.7019 -4.5676 13 16 2.4121 2.1202 1.4288 14 8 2.3056 3.5186 1.2000 15 8 1.6869 1.4414 2.4448 16 7 4.0144 1.8138 1.7137 17 6 4.4347 0.6284 2.4777 18 6 5.5154 -0.1054 1.6675 19 8 6.5462 0.8201 1.3146 20 6 6.1096 1.8890 0.4716 21 1 5.6712 1.4793 -0.4383 22 6 7.2848 2.7624 0.1151 23 8 8.3715 2.5483 0.6090 24 7 7.1280 3.7817 -0.7528 25 6 8.2703 4.6312 -1.0990 26 6 5.0597 2.7219 1.2157 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 2.9079 2.8919 -1.1513 33 1 2.4688 1.4184 -2.0480 34 1 1.6878 4.1503 -4.3903 35 1 4.8406 0.9374 3.4409 36 1 3.5802 -0.0302 2.6331 37 1 5.0748 -0.5225 0.7619 38 1 5.9382 -0.9087 2.2707 39 1 6.2588 3.9531 -1.1476 40 1 7.9531 5.3948 -1.8091 41 1 8.6539 5.1093 -0.1978 42 1 9.0539 4.0209 -1.5483 43 1 4.6191 3.4504 0.5350 44 1 5.5269 3.2387 2.0540 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336954218.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:33 Heat of formation + Delta-G solvation = -143.940432 kcal Electronic energy + Delta-G solvation = -29426.950050 eV Core-core repulsion = 25313.865448 eV Total energy + Delta-G solvation = -4113.084603 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.139 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -40.25131 -38.50902 -36.85098 -36.17294 -35.32101 -34.98262 -34.45778 -32.69509 -31.88073 -29.92508 -28.10121 -26.87322 -26.17416 -24.64004 -22.88549 -22.15283 -21.73694 -20.46357 -18.86602 -17.79105 -17.22041 -16.94444 -16.93398 -16.48773 -16.15004 -15.54413 -15.38862 -15.03139 -14.65448 -14.56975 -14.32989 -14.17000 -13.78429 -13.22081 -13.11086 -13.05943 -12.78413 -12.43930 -12.32688 -12.30635 -12.01280 -11.85530 -11.69612 -11.58369 -11.44479 -11.36170 -11.09723 -11.04852 -10.85309 -10.65172 -10.54280 -10.29263 -9.98108 -9.83923 -9.68966 -9.22569 -8.88794 -8.53293 -8.21278 -6.16709 -4.19236 0.97029 2.50598 2.76466 3.23004 3.24480 3.32819 3.37851 3.89233 3.92891 4.36664 4.46835 4.61284 4.70769 4.82142 4.93799 5.02747 5.14952 5.17463 5.20997 5.22113 5.33936 5.41981 5.44098 5.62097 5.69415 5.71993 5.78330 5.84428 5.98807 6.06120 6.27294 6.30423 6.40265 6.62662 6.87030 6.89937 7.06945 7.26988 7.38009 7.49387 7.81922 8.10013 8.11921 8.83180 9.46258 10.91944 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.011104 B = 0.005208 C = 0.003962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2521.096477 B = 5375.149457 C = 7064.656434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.135 3.865 3 N -0.992 5.992 4 C 0.258 3.742 5 C -0.524 4.524 6 H 0.064 0.936 7 C 0.063 3.937 8 N -0.896 5.896 9 Si 0.894 3.106 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.284 1.284 13 S 2.776 3.224 14 O -0.958 6.958 15 O -0.988 6.988 16 N -1.014 6.014 17 C 0.087 3.913 18 C 0.048 3.952 19 O -0.351 6.351 20 C 0.061 3.939 21 H 0.096 0.904 22 C 0.525 3.475 23 O -0.521 6.521 24 N -0.731 5.731 25 C 0.090 3.910 26 C 0.103 3.897 27 H 0.079 0.921 28 H 0.051 0.949 29 H 0.053 0.947 30 H 0.059 0.941 31 H 0.072 0.928 32 H 0.033 0.967 33 H 0.035 0.965 34 H 0.263 0.737 35 H 0.078 0.922 36 H 0.099 0.901 37 H 0.061 0.939 38 H 0.109 0.891 39 H 0.410 0.590 40 H 0.080 0.920 41 H 0.060 0.940 42 H 0.059 0.941 43 H 0.107 0.893 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.223 -5.292 5.847 11.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.009 3.991 3 N -0.835 5.835 4 C 0.136 3.864 5 C -0.564 4.564 6 H 0.082 0.918 7 C -0.139 4.139 8 N -0.535 5.535 9 Si 0.722 3.278 10 H -0.197 1.197 11 H -0.208 1.208 12 H -0.210 1.210 13 S 2.786 3.214 14 O -0.942 6.942 15 O -0.972 6.972 16 N -0.852 5.852 17 C -0.039 4.039 18 C -0.030 4.030 19 O -0.268 6.268 20 C -0.002 4.002 21 H 0.113 0.887 22 C 0.309 3.691 23 O -0.396 6.396 24 N -0.385 5.385 25 C -0.054 4.054 26 C -0.024 4.024 27 H 0.098 0.902 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.090 0.910 32 H 0.051 0.949 33 H 0.053 0.947 34 H 0.072 0.928 35 H 0.097 0.903 36 H 0.117 0.883 37 H 0.080 0.920 38 H 0.127 0.873 39 H 0.245 0.755 40 H 0.098 0.902 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.125 0.875 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 8.700 -4.864 6.670 11.993 hybrid contribution -1.374 0.379 -0.961 1.719 sum 7.327 -4.484 5.709 10.314 Atomic orbital electron populations 1.22254 0.96195 1.00945 1.03739 1.20973 0.95016 0.82136 1.01010 1.57869 1.78072 1.23143 1.24386 1.19054 0.97583 0.90778 0.78955 1.21541 0.96323 1.31735 1.06783 0.91824 1.24906 0.96873 0.95963 0.96182 1.69901 1.29231 1.40750 1.13649 0.86498 0.83853 0.79198 0.78247 1.19651 1.20831 1.20998 1.02257 0.72263 0.73802 0.73112 1.93625 1.84869 1.30058 1.85616 1.93539 1.69613 1.76391 1.57658 1.58711 1.24951 1.33884 1.67690 1.22155 0.99341 0.87096 0.95344 1.23141 0.89208 0.91407 0.99264 1.88033 1.33718 1.36981 1.68079 1.22263 0.92893 0.89724 0.95357 0.88674 1.20016 0.89370 0.80768 0.78961 1.90707 1.26915 1.69866 1.52083 1.45761 1.14413 1.31786 1.46557 1.21554 0.88922 0.94057 1.00860 1.21867 0.88969 0.91743 0.99778 0.90208 0.92996 0.92830 0.92310 0.90997 0.94900 0.94678 0.92766 0.90326 0.88326 0.92043 0.87304 0.75504 0.90162 0.92161 0.92190 0.87527 0.90053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.84 9.83 37.16 0.37 -2.48 16 2 C 0.13 2.13 6.09 -4.04 -0.02 2.11 16 3 N -0.99 -18.61 2.86 -115.66 -0.33 -18.94 16 4 C 0.26 5.78 5.12 -5.19 -0.03 5.75 16 5 C -0.52 -13.53 8.41 -34.44 -0.29 -13.82 16 6 H 0.06 1.67 6.89 -52.49 -0.36 1.31 16 7 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 8 N -0.90 -24.11 13.29 55.43 0.74 -23.38 16 9 Si 0.89 20.77 29.54 -169.99 -5.02 15.75 16 10 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 13 S 2.78 51.69 6.02 -107.50 -0.65 51.04 16 14 O -0.96 -21.34 15.91 -57.17 -0.91 -22.25 16 15 O -0.99 -19.33 15.90 -57.17 -0.91 -20.24 16 16 N -1.01 -14.84 3.39 -112.83 -0.38 -15.22 16 17 C 0.09 1.02 6.60 -3.31 -0.02 1.00 16 18 C 0.05 0.52 7.00 37.53 0.26 0.78 16 19 O -0.35 -4.92 9.93 -55.04 -0.55 -5.47 16 20 C 0.06 0.82 3.19 -27.73 -0.09 0.73 16 21 H 0.10 1.20 8.14 -51.93 -0.42 0.77 16 22 C 0.52 7.46 7.18 -10.98 -0.08 7.38 16 23 O -0.52 -9.20 16.51 -14.25 -0.24 -9.44 16 24 N -0.73 -8.40 5.68 -67.08 -0.38 -8.78 16 25 C 0.09 0.86 10.70 59.85 0.64 1.50 16 26 C 0.10 1.43 5.81 -3.54 -0.02 1.41 16 27 H 0.08 1.49 6.59 -51.93 -0.34 1.15 16 28 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.06 0.78 7.61 -51.93 -0.40 0.39 16 31 H 0.07 1.04 8.00 -51.93 -0.42 0.62 16 32 H 0.03 0.76 7.61 -51.93 -0.40 0.37 16 33 H 0.04 0.80 8.00 -51.93 -0.42 0.38 16 34 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 35 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.10 1.07 7.24 -51.93 -0.38 0.69 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.41 4.21 8.83 -40.82 -0.36 3.85 16 40 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.11 1.51 7.25 -51.93 -0.38 1.13 16 44 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 373.48 15.07 5.63 5.63 Total: -1.00 -34.25 373.48 -9.18 -43.43 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -6.80 Total: 1.94 kcal Atomic # 6 Polarization: 5.30 SS G_CDS: 0.62 Total: 5.92 kcal Atomic # 7 Polarization: -65.96 SS G_CDS: -0.36 Total: -66.32 kcal Atomic # 8 Polarization: -54.79 SS G_CDS: -2.60 Total: -57.39 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Atomic # 16 Polarization: 51.69 SS G_CDS: -0.65 Total: 51.04 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.25 -9.18 -43.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336954218.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.511 kcal (2) G-P(sol) polarization free energy of solvation -34.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds