Wall clock time and date at job start Tue Mar 31 2020 18:13:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46500 * 109.47297 * 2 1 4 4 C 1.46499 * 119.99781 * 275.00317 * 3 2 1 5 5 C 1.50699 * 109.47166 * 274.99333 * 4 3 2 6 6 H 1.08008 * 119.99630 * 0.02562 * 5 4 3 7 7 C 1.37877 * 120.00214 * 180.02562 * 5 4 3 8 8 N 1.31514 * 120.00093 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 119.99817 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47374 * 59.99882 * 9 7 5 11 11 H 1.48504 * 109.46859 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.47015 * 299.99655 * 9 7 5 13 13 S 1.65598 * 119.99824 * 94.99741 * 3 2 1 14 14 O 1.42094 * 106.40008 * 156.46404 * 13 3 2 15 15 O 1.42094 * 106.40184 * 23.54101 * 13 3 2 16 16 N 1.65607 * 107.21853 * 270.00146 * 13 3 2 17 17 C 1.47154 * 120.98025 * 269.97904 * 16 13 3 18 18 C 1.53302 * 108.38000 * 230.55690 * 17 16 13 19 19 O 1.42957 * 109.26334 * 307.72312 * 18 17 16 20 20 C 1.42960 * 114.17150 * 62.50309 * 19 18 17 21 21 H 1.09000 * 109.51386 * 57.44575 * 20 19 18 22 22 C 1.50694 * 109.51204 * 177.54937 * 20 19 18 23 23 O 1.21283 * 120.00363 * 4.89691 * 22 20 19 24 24 N 1.34784 * 119.99988 * 184.89809 * 22 20 19 25 25 C 1.46493 * 119.99864 * 179.72721 * 24 22 20 26 26 C 1.47152 * 120.98055 * 89.99945 * 16 13 3 27 27 H 1.08991 * 109.46993 * 300.00298 * 1 2 3 28 28 H 1.09005 * 109.46958 * 59.99746 * 1 2 3 29 29 H 1.09002 * 109.47094 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46978 * 240.00338 * 2 1 3 31 31 H 1.08997 * 109.47024 * 119.99955 * 2 1 3 32 32 H 1.08994 * 109.47706 * 35.00233 * 4 3 2 33 33 H 1.09007 * 109.46991 * 155.00151 * 4 3 2 34 34 H 0.96996 * 120.00085 * 180.02562 * 8 7 5 35 35 H 1.08997 * 109.68469 * 350.28096 * 17 16 13 36 36 H 1.09001 * 109.67919 * 110.83671 * 17 16 13 37 37 H 1.09000 * 109.51376 * 67.62373 * 18 17 16 38 38 H 1.08996 * 109.50517 * 187.72530 * 18 17 16 39 39 H 0.97000 * 119.99339 * 0.02562 * 24 22 20 40 40 H 1.09006 * 109.47678 * 59.99732 * 25 24 22 41 41 H 1.09006 * 109.47059 * 180.02562 * 25 24 22 42 42 H 1.09007 * 109.47196 * 299.99538 * 25 24 22 43 43 H 1.09004 * 109.67793 * 9.72419 * 26 16 13 44 44 H 1.08988 * 109.71179 * 249.18327 * 26 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1086 -1.2639 5 6 3.4948 1.7889 -1.8823 6 1 4.1721 1.1111 -1.3839 7 6 3.8529 2.3614 -3.0844 8 7 3.0284 3.1870 -3.6911 9 14 5.5094 1.9644 -3.8512 10 1 5.5987 0.5046 -4.1084 11 1 5.6517 2.7028 -5.1318 12 1 6.5948 2.3708 -2.9228 13 16 2.4122 2.1201 1.4287 14 8 3.3283 3.1569 1.1049 15 8 2.7095 1.0799 2.3499 16 7 1.0431 2.8642 1.9895 17 6 0.7295 4.2531 1.6179 18 6 0.4209 5.0380 2.8981 19 8 -0.5758 4.3414 3.6498 20 6 -0.1736 3.0432 4.0932 21 1 0.7308 3.1282 4.6956 22 6 -1.2740 2.4308 4.9209 23 8 -2.3354 3.0055 5.0394 24 7 -1.0786 1.2442 5.5296 25 6 -2.1462 0.6517 6.3391 26 6 0.1044 2.1561 2.8743 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8901 31 1 1.8933 -0.5138 0.8900 32 1 1.3618 1.8098 -1.9453 33 1 2.0922 3.1803 -1.0756 34 1 3.2802 3.5895 -4.5369 35 1 1.5848 4.6995 1.1107 36 1 -0.1386 4.2697 0.9589 37 1 1.3277 5.1310 3.4957 38 1 0.0536 6.0304 2.6369 39 1 -0.2296 0.7847 5.4352 40 1 -3.0255 0.4866 5.7164 41 1 -1.8064 -0.2998 6.7484 42 1 -2.4009 1.3277 7.1555 43 1 0.5460 1.2139 3.1991 44 1 -0.8265 1.9611 2.3421 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336954219.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:37 Heat of formation + Delta-G solvation = -143.661295 kcal Electronic energy + Delta-G solvation = -29084.423818 eV Core-core repulsion = 24971.351319 eV Total energy + Delta-G solvation = -4113.072498 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.139 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.38726 -38.60706 -36.88162 -36.12478 -35.34387 -35.09482 -34.59152 -32.72238 -31.94869 -30.06027 -28.19988 -26.69229 -26.28853 -24.70433 -23.19555 -22.05830 -21.69022 -20.67117 -18.76737 -17.93866 -17.38460 -17.03833 -16.83829 -16.38762 -16.15863 -15.61530 -15.50472 -15.12530 -14.76459 -14.71304 -14.40700 -14.22373 -13.84075 -13.45536 -13.18165 -13.00317 -12.91374 -12.59136 -12.41362 -12.21963 -12.10192 -11.88995 -11.79886 -11.75699 -11.50079 -11.31308 -11.05771 -10.96201 -10.90043 -10.53857 -10.47427 -10.33919 -10.03802 -9.97951 -9.82403 -9.45042 -8.91221 -8.48134 -8.14995 -6.10786 -4.15196 0.98712 2.33447 2.59129 3.21865 3.30562 3.34426 3.38618 3.80037 3.88970 4.36002 4.40828 4.51269 4.67659 4.76967 4.83995 4.94606 5.09739 5.11042 5.21002 5.23362 5.31103 5.35570 5.46707 5.49300 5.51446 5.62780 5.66133 5.89560 5.90950 5.99937 6.04647 6.22052 6.39960 6.51717 6.60384 6.81222 7.16312 7.17514 7.33546 7.54445 7.86193 7.92944 8.15108 8.86732 9.50280 10.97682 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.020867 B = 0.003599 C = 0.003390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.511603 B = 7778.451486 C = 8258.482864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.117 3.883 3 N -0.988 5.988 4 C 0.259 3.741 5 C -0.531 4.531 6 H 0.059 0.941 7 C 0.064 3.936 8 N -0.895 5.895 9 Si 0.896 3.104 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.274 1.274 13 S 2.777 3.223 14 O -0.957 6.957 15 O -0.995 6.995 16 N -1.013 6.013 17 C 0.082 3.918 18 C 0.051 3.949 19 O -0.351 6.351 20 C 0.064 3.936 21 H 0.090 0.910 22 C 0.523 3.477 23 O -0.514 6.514 24 N -0.735 5.735 25 C 0.089 3.911 26 C 0.099 3.901 27 H 0.046 0.954 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.086 0.914 31 H 0.075 0.925 32 H 0.036 0.964 33 H 0.036 0.964 34 H 0.265 0.735 35 H 0.110 0.890 36 H 0.079 0.921 37 H 0.059 0.941 38 H 0.113 0.887 39 H 0.406 0.594 40 H 0.062 0.938 41 H 0.078 0.922 42 H 0.060 0.940 43 H 0.103 0.897 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.482 -4.027 15.727 18.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.010 4.010 3 N -0.830 5.830 4 C 0.137 3.863 5 C -0.570 4.570 6 H 0.077 0.923 7 C -0.139 4.139 8 N -0.534 5.534 9 Si 0.724 3.276 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.200 1.200 13 S 2.787 3.213 14 O -0.940 6.940 15 O -0.979 6.979 16 N -0.851 5.851 17 C -0.043 4.043 18 C -0.027 4.027 19 O -0.268 6.268 20 C 0.000 4.000 21 H 0.107 0.893 22 C 0.307 3.693 23 O -0.388 6.388 24 N -0.389 5.389 25 C -0.055 4.055 26 C -0.028 4.028 27 H 0.065 0.935 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.104 0.896 31 H 0.093 0.907 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.074 0.926 35 H 0.128 0.872 36 H 0.098 0.902 37 H 0.077 0.923 38 H 0.131 0.869 39 H 0.240 0.760 40 H 0.080 0.920 41 H 0.097 0.903 42 H 0.078 0.922 43 H 0.121 0.879 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -8.615 -3.391 16.082 18.556 hybrid contribution 1.170 -0.486 -0.908 1.559 sum -7.444 -3.876 15.174 17.340 Atomic orbital electron populations 1.22281 0.97188 1.01489 1.02122 1.21164 0.93089 0.83165 1.03574 1.57758 1.80717 1.21385 1.23130 1.19032 0.97425 0.91005 0.78838 1.21437 1.02062 1.27861 1.05675 0.92258 1.24920 0.97368 0.94776 0.96831 1.69902 1.36141 1.30075 1.17261 0.86583 0.84160 0.78447 0.78425 1.20164 1.21144 1.19988 1.02138 0.73120 0.73141 0.72882 1.93627 1.58755 1.57628 1.84020 1.93497 1.83173 1.57628 1.63579 1.58650 1.42348 1.22399 1.61692 1.22161 1.03739 0.80885 0.97551 1.23060 0.92140 0.95731 0.91744 1.88044 1.40050 1.26734 1.72005 1.22190 0.96170 0.86501 0.95121 0.89260 1.20082 0.88472 0.81023 0.79679 1.90732 1.26548 1.60967 1.60542 1.45735 1.18880 1.21978 1.52282 1.21560 0.90817 0.98015 0.95068 1.21879 0.95216 0.95208 0.90507 0.93510 0.91831 0.92129 0.89574 0.90665 0.94627 0.94620 0.92582 0.87194 0.90230 0.92298 0.86909 0.76019 0.91979 0.90324 0.92151 0.87885 0.90077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.30 10.24 37.16 0.38 -1.92 16 2 C 0.12 1.91 6.40 -4.04 -0.03 1.88 16 3 N -0.99 -19.45 2.82 -115.66 -0.33 -19.78 16 4 C 0.26 6.21 5.10 -5.19 -0.03 6.19 16 5 C -0.53 -14.47 9.38 -34.44 -0.32 -14.80 16 6 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.89 -25.49 13.29 55.43 0.74 -24.76 16 9 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 11 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 13 S 2.78 51.97 6.12 -107.50 -0.66 51.31 16 14 O -0.96 -21.57 15.73 -57.17 -0.90 -22.47 16 15 O -0.99 -18.68 15.31 -57.17 -0.88 -19.56 16 16 N -1.01 -14.82 3.40 -113.06 -0.38 -15.20 16 17 C 0.08 1.12 6.71 -3.53 -0.02 1.09 16 18 C 0.05 0.60 6.98 37.31 0.26 0.86 16 19 O -0.35 -4.82 9.92 -55.06 -0.55 -5.37 16 20 C 0.06 0.76 3.19 -27.73 -0.09 0.67 16 21 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 22 C 0.52 6.34 7.18 -10.98 -0.08 6.27 16 23 O -0.51 -8.30 16.51 -14.28 -0.24 -8.53 16 24 N -0.73 -6.11 5.68 -67.07 -0.38 -6.49 16 25 C 0.09 0.60 10.70 59.84 0.64 1.24 16 26 C 0.10 1.20 5.09 -3.53 -0.02 1.18 16 27 H 0.05 0.57 6.37 -51.93 -0.33 0.24 16 28 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.09 1.47 8.11 -51.93 -0.42 1.05 16 31 H 0.08 1.14 6.91 -51.93 -0.36 0.78 16 32 H 0.04 0.87 8.11 -51.93 -0.42 0.45 16 33 H 0.04 0.91 7.61 -51.92 -0.40 0.51 16 34 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 35 H 0.11 1.61 6.94 -51.93 -0.36 1.25 16 36 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.11 1.07 8.14 -51.93 -0.42 0.64 16 39 H 0.41 2.39 8.83 -40.82 -0.36 2.03 16 40 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 42 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.10 1.10 6.95 -51.93 -0.36 0.74 16 44 H 0.08 0.96 7.34 -51.94 -0.38 0.57 16 LS Contribution 372.64 15.07 5.62 5.62 Total: -1.00 -35.62 372.64 -9.12 -44.74 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -6.74 Total: -0.21 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: 0.60 Total: 4.33 kcal Atomic # 7 Polarization: -65.86 SS G_CDS: -0.36 Total: -66.22 kcal Atomic # 8 Polarization: -53.38 SS G_CDS: -2.56 Total: -55.93 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: 51.97 SS G_CDS: -0.66 Total: 51.31 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -35.62 -9.12 -44.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336954219.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.925 kcal (2) G-P(sol) polarization free energy of solvation -35.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds