Wall clock time and date at job start Tue Mar 31 2020 18:13:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46500 * 109.47297 * 2 1 4 4 C 1.46499 * 119.99781 * 275.00317 * 3 2 1 5 5 C 1.50699 * 109.47166 * 274.99333 * 4 3 2 6 6 H 1.08008 * 119.99630 * 0.02562 * 5 4 3 7 7 C 1.37877 * 120.00214 * 180.02562 * 5 4 3 8 8 N 1.31514 * 120.00093 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 119.99817 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47374 * 59.99882 * 9 7 5 11 11 H 1.48504 * 109.46859 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.47015 * 299.99655 * 9 7 5 13 13 S 1.65598 * 119.99824 * 94.99741 * 3 2 1 14 14 O 1.42094 * 106.40008 * 156.46404 * 13 3 2 15 15 O 1.42094 * 106.40184 * 23.54101 * 13 3 2 16 16 N 1.65607 * 107.21853 * 270.00146 * 13 3 2 17 17 C 1.47154 * 120.98025 * 269.97904 * 16 13 3 18 18 C 1.53302 * 108.38000 * 230.55690 * 17 16 13 19 19 O 1.42957 * 109.26334 * 307.72312 * 18 17 16 20 20 C 1.42960 * 114.17150 * 62.50309 * 19 18 17 21 21 H 1.09000 * 109.51386 * 57.44575 * 20 19 18 22 22 C 1.50694 * 109.51204 * 177.54937 * 20 19 18 23 23 O 1.21283 * 120.00363 * 4.89691 * 22 20 19 24 24 N 1.34784 * 119.99988 * 184.89809 * 22 20 19 25 25 C 1.46493 * 119.99864 * 179.72721 * 24 22 20 26 26 C 1.47152 * 120.98055 * 89.99945 * 16 13 3 27 27 H 1.08991 * 109.46993 * 300.00298 * 1 2 3 28 28 H 1.09005 * 109.46958 * 59.99746 * 1 2 3 29 29 H 1.09002 * 109.47094 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46978 * 240.00338 * 2 1 3 31 31 H 1.08997 * 109.47024 * 119.99955 * 2 1 3 32 32 H 1.08994 * 109.47706 * 35.00233 * 4 3 2 33 33 H 1.09007 * 109.46991 * 155.00151 * 4 3 2 34 34 H 0.96996 * 120.00085 * 180.02562 * 8 7 5 35 35 H 1.08997 * 109.68469 * 350.28096 * 17 16 13 36 36 H 1.09001 * 109.67919 * 110.83671 * 17 16 13 37 37 H 1.09000 * 109.51376 * 67.62373 * 18 17 16 38 38 H 1.08996 * 109.50517 * 187.72530 * 18 17 16 39 39 H 0.97000 * 119.99339 * 0.02562 * 24 22 20 40 40 H 1.09006 * 109.47678 * 59.99732 * 25 24 22 41 41 H 1.09006 * 109.47059 * 180.02562 * 25 24 22 42 42 H 1.09007 * 109.47196 * 299.99538 * 25 24 22 43 43 H 1.09004 * 109.67793 * 9.72419 * 26 16 13 44 44 H 1.08988 * 109.71179 * 249.18327 * 26 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1086 -1.2639 5 6 3.4948 1.7889 -1.8823 6 1 4.1721 1.1111 -1.3839 7 6 3.8529 2.3614 -3.0844 8 7 3.0284 3.1870 -3.6911 9 14 5.5094 1.9644 -3.8512 10 1 5.5987 0.5046 -4.1084 11 1 5.6517 2.7028 -5.1318 12 1 6.5948 2.3708 -2.9228 13 16 2.4122 2.1201 1.4287 14 8 3.3283 3.1569 1.1049 15 8 2.7095 1.0799 2.3499 16 7 1.0431 2.8642 1.9895 17 6 0.7295 4.2531 1.6179 18 6 0.4209 5.0380 2.8981 19 8 -0.5758 4.3414 3.6498 20 6 -0.1736 3.0432 4.0932 21 1 0.7308 3.1282 4.6956 22 6 -1.2740 2.4308 4.9209 23 8 -2.3354 3.0055 5.0394 24 7 -1.0786 1.2442 5.5296 25 6 -2.1462 0.6517 6.3391 26 6 0.1044 2.1561 2.8743 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8901 31 1 1.8933 -0.5138 0.8900 32 1 1.3618 1.8098 -1.9453 33 1 2.0922 3.1803 -1.0756 34 1 3.2802 3.5895 -4.5369 35 1 1.5848 4.6995 1.1107 36 1 -0.1386 4.2697 0.9589 37 1 1.3277 5.1310 3.4957 38 1 0.0536 6.0304 2.6369 39 1 -0.2296 0.7847 5.4352 40 1 -3.0255 0.4866 5.7164 41 1 -1.8064 -0.2998 6.7484 42 1 -2.4009 1.3277 7.1555 43 1 0.5460 1.2139 3.1991 44 1 -0.8265 1.9611 2.3421 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336954219.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:36 Heat of formation + Delta-G solvation = -172.012621 kcal Electronic energy + Delta-G solvation = -29085.653224 eV Core-core repulsion = 24971.351319 eV Total energy + Delta-G solvation = -4114.301904 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.139 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.33990 -39.58976 -38.43668 -37.69452 -36.92480 -36.10271 -35.54528 -34.71706 -32.91354 -31.54620 -29.12969 -28.51176 -27.15967 -25.64878 -24.95175 -23.34493 -22.92508 -21.55509 -20.00521 -19.30452 -18.66111 -18.35984 -18.14892 -18.00817 -17.42363 -16.89606 -16.47600 -16.41508 -16.07383 -15.67962 -15.63028 -15.31494 -15.23053 -14.75188 -14.68314 -14.10970 -13.89976 -13.78750 -13.67671 -13.54170 -13.40451 -13.30196 -13.09863 -13.06391 -12.93831 -12.77891 -12.70535 -12.58923 -12.24334 -12.15224 -11.86714 -11.77733 -11.63405 -11.40181 -10.96014 -10.59404 -10.21747 -10.03706 -9.78450 -8.20174 -6.31997 -0.47712 1.39695 1.40610 1.42741 1.49727 1.79176 1.86826 2.37499 2.47844 2.93559 3.10885 3.23781 3.49036 3.63143 3.70346 3.87889 3.99379 4.07424 4.13619 4.30236 4.40958 4.45358 4.49943 4.53572 4.59619 4.66240 4.70378 4.85188 4.90847 4.98683 5.01489 5.11195 5.17342 5.31202 5.34145 5.39812 5.53748 5.71483 5.89721 5.95224 6.10842 6.43798 6.76040 7.11534 7.36940 8.87028 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.020867 B = 0.003599 C = 0.003390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.511603 B = 7778.451486 C = 8258.482864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.108 3.892 3 N -0.996 5.996 4 C 0.276 3.724 5 C -0.550 4.550 6 H 0.052 0.948 7 C 0.014 3.986 8 N -0.923 5.923 9 Si 0.953 3.047 10 H -0.264 1.264 11 H -0.278 1.278 12 H -0.277 1.277 13 S 2.791 3.209 14 O -1.000 7.000 15 O -0.995 6.995 16 N -1.005 6.005 17 C 0.077 3.923 18 C 0.055 3.945 19 O -0.369 6.369 20 C 0.061 3.939 21 H 0.108 0.892 22 C 0.524 3.476 23 O -0.561 6.561 24 N -0.717 5.717 25 C 0.084 3.916 26 C 0.096 3.904 27 H 0.059 0.941 28 H 0.047 0.953 29 H 0.090 0.910 30 H 0.074 0.926 31 H 0.091 0.909 32 H 0.025 0.975 33 H 0.016 0.984 34 H 0.267 0.733 35 H 0.095 0.905 36 H 0.084 0.916 37 H 0.067 0.933 38 H 0.135 0.865 39 H 0.420 0.580 40 H 0.054 0.946 41 H 0.115 0.885 42 H 0.053 0.947 43 H 0.121 0.879 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.570 -5.419 16.943 19.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.018 4.018 3 N -0.837 5.837 4 C 0.152 3.848 5 C -0.589 4.589 6 H 0.070 0.930 7 C -0.186 4.186 8 N -0.563 5.563 9 Si 0.778 3.222 10 H -0.189 1.189 11 H -0.203 1.203 12 H -0.202 1.202 13 S 2.802 3.198 14 O -0.984 6.984 15 O -0.979 6.979 16 N -0.846 5.846 17 C -0.048 4.048 18 C -0.023 4.023 19 O -0.287 6.287 20 C -0.002 4.002 21 H 0.126 0.874 22 C 0.308 3.692 23 O -0.439 6.439 24 N -0.371 5.371 25 C -0.059 4.059 26 C -0.030 4.030 27 H 0.078 0.922 28 H 0.066 0.934 29 H 0.108 0.892 30 H 0.092 0.908 31 H 0.109 0.891 32 H 0.043 0.957 33 H 0.034 0.966 34 H 0.076 0.924 35 H 0.113 0.887 36 H 0.102 0.898 37 H 0.086 0.914 38 H 0.153 0.847 39 H 0.257 0.743 40 H 0.073 0.927 41 H 0.133 0.867 42 H 0.072 0.928 43 H 0.139 0.861 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -8.678 -4.854 17.316 19.968 hybrid contribution 1.156 -0.102 -1.191 1.663 sum -7.522 -4.956 16.125 18.470 Atomic orbital electron populations 1.22211 0.94696 1.03395 1.01972 1.21409 0.95218 0.81392 1.03734 1.57689 1.81363 1.22705 1.21938 1.18537 0.95661 0.90275 0.80279 1.21803 1.03315 1.27706 1.06095 0.92966 1.25710 1.00721 0.94709 0.97419 1.69994 1.37734 1.30866 1.17658 0.85681 0.79897 0.78911 0.77681 1.18885 1.20278 1.20209 1.01502 0.73304 0.72496 0.72521 1.93570 1.61145 1.59049 1.84643 1.93482 1.83617 1.57644 1.63177 1.58269 1.41884 1.22781 1.61636 1.22289 1.03235 0.80413 0.98861 1.23160 0.92434 0.96124 0.90563 1.88037 1.40979 1.27553 1.72138 1.22322 0.96894 0.85847 0.95106 0.87447 1.20148 0.87684 0.81689 0.79668 1.90715 1.28185 1.62471 1.62520 1.45697 1.19871 1.20620 1.50929 1.21756 0.90334 0.99377 0.94465 1.22116 0.94901 0.95737 0.90262 0.92224 0.93405 0.89166 0.90795 0.89121 0.95680 0.96584 0.92389 0.88685 0.89753 0.91423 0.84693 0.74338 0.92741 0.86665 0.92819 0.86076 0.89463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.08 10.24 71.98 0.74 -3.34 16 2 C 0.11 3.42 6.40 86.38 0.55 3.97 16 3 N -1.00 -39.21 2.82 -519.84 -1.47 -40.68 16 4 C 0.28 13.57 5.10 85.63 0.44 14.01 16 5 C -0.55 -30.47 9.38 25.60 0.24 -30.23 16 6 H 0.05 2.89 7.81 -2.91 -0.02 2.87 16 7 C 0.01 0.79 5.46 84.65 0.46 1.25 16 8 N -0.92 -53.28 13.29 21.45 0.28 -53.00 16 9 Si 0.95 43.86 29.54 68.60 2.03 45.89 16 10 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 11 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 12 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 13 S 2.79 103.22 6.12 -56.49 -0.35 102.87 16 14 O -1.00 -45.87 15.73 -128.00 -2.01 -47.88 16 15 O -1.00 -35.76 15.31 -128.00 -1.96 -37.72 16 16 N -1.01 -28.40 3.40 -511.61 -1.74 -30.14 16 17 C 0.08 2.07 6.71 86.36 0.58 2.65 16 18 C 0.06 1.22 6.98 72.08 0.50 1.72 16 19 O -0.37 -9.65 9.92 -130.02 -1.29 -10.94 16 20 C 0.06 1.35 3.19 29.95 0.10 1.45 16 21 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 22 C 0.52 11.82 7.18 87.65 0.63 12.45 16 23 O -0.56 -17.75 16.51 15.93 0.26 -17.49 16 24 N -0.72 -10.09 5.68 -484.51 -2.75 -12.84 16 25 C 0.08 0.92 10.70 127.77 1.37 2.29 16 26 C 0.10 2.12 5.09 86.35 0.44 2.56 16 27 H 0.06 1.31 6.37 -2.39 -0.02 1.30 16 28 H 0.05 1.34 8.14 -2.38 -0.02 1.32 16 29 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.07 2.50 8.11 -2.38 -0.02 2.48 16 31 H 0.09 2.58 6.91 -2.39 -0.02 2.56 16 32 H 0.03 1.27 8.11 -2.39 -0.02 1.25 16 33 H 0.02 0.85 7.61 -2.38 -0.02 0.83 16 34 H 0.27 14.57 8.31 -92.71 -0.77 13.80 16 35 H 0.09 2.85 6.94 -2.39 -0.02 2.84 16 36 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 37 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.14 2.35 8.14 -2.39 -0.02 2.33 16 39 H 0.42 3.54 8.83 -92.71 -0.82 2.72 16 40 H 0.05 0.72 8.14 -2.38 -0.02 0.70 16 41 H 0.11 0.43 8.14 -2.38 -0.02 0.41 16 42 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 43 H 0.12 2.22 6.95 -2.39 -0.02 2.20 16 44 H 0.09 1.86 7.34 -2.39 -0.02 1.85 16 Total: -1.00 -77.59 372.64 -2.75 -80.34 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: 0.19 Total: 12.78 kcal Atomic # 6 Polarization: 2.75 SS G_CDS: 6.04 Total: 8.80 kcal Atomic # 7 Polarization: -130.99 SS G_CDS: -5.67 Total: -136.66 kcal Atomic # 8 Polarization: -109.02 SS G_CDS: -5.00 Total: -114.02 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Atomic # 16 Polarization: 103.22 SS G_CDS: -0.35 Total: 102.87 kcal Total: -77.59 -2.75 -80.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336954219.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.668 kcal (2) G-P(sol) polarization free energy of solvation -77.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds