Wall clock time and date at job start Tue Mar 31 2020 19:17:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42901 * 113.99613 * 2 1 4 4 C 1.52998 * 109.46985 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.47095 * 65.00088 * 4 3 2 6 6 C 1.46492 * 120.00347 * 275.00325 * 5 4 3 7 7 C 1.50705 * 109.46992 * 279.42026 * 6 5 4 8 8 H 1.08006 * 119.99954 * 4.75496 * 7 6 5 9 9 C 1.37874 * 119.99845 * 184.75781 * 7 6 5 10 10 N 1.31511 * 120.00327 * 5.28562 * 9 7 6 11 11 Si 1.86806 * 119.99810 * 185.28470 * 9 7 6 12 12 H 1.48495 * 109.47304 * 94.98062 * 11 9 7 13 13 H 1.48500 * 109.46857 * 214.98481 * 11 9 7 14 14 H 1.48498 * 109.47082 * 334.97765 * 11 9 7 15 15 S 1.65604 * 119.99353 * 94.99868 * 5 4 3 16 16 O 1.42112 * 106.39657 * 149.23056 * 15 5 4 17 17 O 1.42099 * 106.40777 * 16.31296 * 15 5 4 18 18 N 1.65599 * 107.21917 * 262.76664 * 15 5 4 19 19 C 1.46494 * 119.99832 * 67.93114 * 18 15 5 20 20 H 1.09002 * 109.60480 * 358.22324 * 19 18 15 21 21 C 1.53347 * 109.73781 * 118.63291 * 19 18 15 22 22 C 1.53072 * 108.42670 * 187.36908 * 21 19 18 23 23 C 1.50182 * 109.88999 * 311.09954 * 22 21 19 24 24 O 1.21278 * 118.24419 * 197.55766 * 23 22 21 25 25 N 1.32951 * 123.39147 * 17.52843 * 23 22 21 26 26 C 1.45752 * 124.41561 * 357.87958 * 25 23 22 27 27 H 1.09003 * 109.46949 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47251 * 299.99015 * 1 2 3 29 29 H 1.08998 * 109.47574 * 59.99598 * 1 2 3 30 30 H 1.09002 * 109.46700 * 60.00578 * 3 2 1 31 31 H 1.08998 * 109.47662 * 300.00569 * 3 2 1 32 32 H 1.09005 * 109.47274 * 305.00528 * 4 3 2 33 33 H 1.09002 * 109.47398 * 185.00099 * 4 3 2 34 34 H 1.08994 * 109.47060 * 39.41468 * 6 5 4 35 35 H 1.08994 * 109.47493 * 159.42143 * 6 5 4 36 36 H 0.97005 * 120.00092 * 179.97438 * 10 9 7 37 37 H 0.97002 * 120.00137 * 247.92906 * 18 15 5 38 38 H 1.08997 * 109.67609 * 307.10006 * 21 19 18 39 39 H 1.08996 * 109.67636 * 67.63249 * 21 19 18 40 40 H 1.09001 * 109.39991 * 71.22608 * 22 21 19 41 41 H 1.08993 * 109.40325 * 190.96849 * 22 21 19 42 42 H 0.97000 * 117.64265 * 177.87272 * 25 23 22 43 43 H 1.08998 * 109.30265 * 258.75868 * 26 25 23 44 44 H 1.09003 * 109.30332 * 139.17515 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9756 0.5645 -1.2528 6 6 4.0003 -0.8948 -1.3783 7 6 5.2498 -1.4336 -0.7304 8 1 5.9162 -0.7660 -0.2044 9 6 5.5420 -2.7787 -0.8092 10 7 4.7879 -3.5740 -1.5360 11 14 7.0093 -3.4715 0.1164 12 1 6.5601 -4.0074 1.4264 13 1 7.6264 -4.5627 -0.6796 14 1 8.0079 -2.3950 0.3381 15 16 4.4452 1.5133 -2.5263 16 8 5.4302 0.7741 -3.2355 17 8 4.6796 2.8104 -1.9954 18 7 3.1437 1.6514 -3.5408 19 6 1.9573 2.3967 -3.1129 20 1 2.1003 2.7587 -2.0947 21 6 1.7251 3.5852 -4.0536 22 6 0.5974 4.4452 -3.4775 23 6 -0.5725 3.5767 -3.1136 24 8 -1.6518 4.1058 -2.9521 25 7 -0.4858 2.2589 -2.9600 26 6 0.7314 1.4840 -3.1653 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 1.6885 1.8463 0.8901 31 1 1.6885 1.8465 -0.8899 32 1 3.8514 0.5682 0.8409 33 1 3.9785 2.1766 0.0889 34 1 3.1246 -1.3167 -0.8854 35 1 3.9909 -1.1689 -2.4332 36 1 4.9937 -4.5204 -1.5917 37 1 3.1669 1.2389 -4.4184 38 1 2.6368 4.1777 -4.1283 39 1 1.4414 3.2216 -5.0412 40 1 0.9552 4.9624 -2.5873 41 1 0.2861 5.1793 -4.2206 42 1 -1.2879 1.7832 -2.6932 43 1 0.6876 0.9953 -4.1387 44 1 0.8123 0.7268 -2.3854 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337101550.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:36 Heat of formation + Delta-G solvation = -151.431741 kcal Electronic energy + Delta-G solvation = -29692.426054 eV Core-core repulsion = 25579.016604 eV Total energy + Delta-G solvation = -4113.409450 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.139 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.57669 -38.12417 -37.31275 -36.66858 -35.45432 -35.27671 -34.21309 -32.55247 -32.49247 -29.64211 -28.35006 -26.84645 -25.79831 -24.72674 -22.95084 -22.80036 -21.92203 -19.85966 -18.99298 -17.67575 -17.44225 -16.97875 -16.47205 -16.35922 -16.26427 -15.95723 -15.76806 -15.29575 -14.84881 -14.75172 -14.34505 -14.28948 -14.22325 -13.64516 -13.44650 -12.72719 -12.63454 -12.43595 -12.34622 -12.08371 -12.01500 -11.84439 -11.69933 -11.59173 -11.49344 -11.34476 -11.18483 -11.05958 -10.84774 -10.66386 -10.45472 -10.06899 -9.99352 -9.76767 -9.58785 -9.43826 -9.33610 -8.39514 -8.10464 -6.03496 -4.05311 1.07574 2.42778 2.95285 3.32416 3.38215 3.39423 3.44414 3.93018 3.99539 4.27719 4.34446 4.44422 4.46893 4.57182 4.71740 4.95995 5.03884 5.12182 5.21811 5.26100 5.31828 5.34608 5.41242 5.44406 5.49185 5.56455 5.61601 5.63917 5.73514 5.81917 5.93310 6.24658 6.47095 6.48379 6.95343 7.07758 7.33978 7.35412 7.43678 7.67898 7.95137 7.96695 8.26024 8.96011 9.58519 11.05335 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.016685 B = 0.004389 C = 0.003888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.792456 B = 6378.373176 C = 7200.143930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.362 6.362 3 C 0.031 3.969 4 C 0.120 3.880 5 N -0.983 5.983 6 C 0.258 3.742 7 C -0.526 4.526 8 H 0.059 0.941 9 C 0.063 3.937 10 N -0.894 5.894 11 Si 0.894 3.106 12 H -0.281 1.281 13 H -0.286 1.286 14 H -0.273 1.273 15 S 2.774 3.226 16 O -0.958 6.958 17 O -0.997 6.997 18 N -1.123 6.123 19 C 0.140 3.860 20 H 0.101 0.899 21 C -0.135 4.135 22 C -0.136 4.136 23 C 0.519 3.481 24 O -0.561 6.561 25 N -0.714 5.714 26 C 0.086 3.914 27 H 0.085 0.915 28 H 0.036 0.964 29 H 0.033 0.967 30 H 0.053 0.947 31 H 0.044 0.956 32 H 0.098 0.902 33 H 0.094 0.906 34 H 0.050 0.950 35 H 0.036 0.964 36 H 0.262 0.738 37 H 0.416 0.584 38 H 0.089 0.911 39 H 0.078 0.922 40 H 0.105 0.895 41 H 0.106 0.894 42 H 0.400 0.600 43 H 0.078 0.922 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.312 11.618 -2.531 15.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.280 6.280 3 C -0.048 4.048 4 C -0.007 4.007 5 N -0.824 5.824 6 C 0.136 3.864 7 C -0.566 4.566 8 H 0.077 0.923 9 C -0.139 4.139 10 N -0.533 5.533 11 Si 0.722 3.278 12 H -0.208 1.208 13 H -0.212 1.212 14 H -0.198 1.198 15 S 2.782 3.218 16 O -0.941 6.941 17 O -0.981 6.981 18 N -0.879 5.879 19 C 0.031 3.969 20 H 0.118 0.882 21 C -0.174 4.174 22 C -0.176 4.176 23 C 0.306 3.694 24 O -0.440 6.440 25 N -0.366 5.366 26 C -0.040 4.040 27 H 0.104 0.896 28 H 0.055 0.945 29 H 0.052 0.948 30 H 0.071 0.929 31 H 0.062 0.938 32 H 0.116 0.884 33 H 0.112 0.888 34 H 0.068 0.932 35 H 0.054 0.946 36 H 0.072 0.928 37 H 0.249 0.751 38 H 0.108 0.892 39 H 0.096 0.904 40 H 0.123 0.877 41 H 0.124 0.876 42 H 0.236 0.764 43 H 0.096 0.904 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -9.666 12.117 -2.536 15.706 hybrid contribution -0.079 -1.018 0.241 1.049 sum -9.745 11.100 -2.295 14.948 Atomic orbital electron populations 1.22789 0.82565 1.02611 0.99140 1.88175 1.18150 1.26610 1.95043 1.23442 0.95960 0.85606 0.99747 1.21303 0.90573 0.99349 0.89456 1.57687 1.81427 1.19387 1.23938 1.19156 0.98120 0.71242 0.97882 1.21487 1.07675 0.93098 1.34326 0.92257 1.24892 0.96718 0.97005 0.95281 1.69923 1.39383 1.04945 1.39081 0.86545 0.82760 0.78798 0.79668 1.20753 1.21218 1.19823 1.02264 0.73308 0.72992 0.73277 1.93671 1.55125 1.72298 1.73032 1.93529 1.84550 1.40368 1.79638 1.56308 1.32154 1.67889 1.31572 1.20950 0.85094 0.91264 0.99632 0.88161 1.22114 0.99381 0.96446 0.99483 1.21658 0.93460 0.98375 1.04148 1.20129 0.90558 0.82597 0.76137 1.90767 1.29136 1.72132 1.52008 1.45347 1.13684 1.07656 1.69915 1.22057 0.83430 0.94512 1.03958 0.89644 0.94539 0.94847 0.92853 0.93790 0.88364 0.88815 0.93188 0.94591 0.92844 0.75085 0.89239 0.90377 0.87723 0.87601 0.76400 0.90382 0.88562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.65 101.05 1.08 1.36 16 2 O -0.36 -5.36 8.62 -35.23 -0.30 -5.67 16 3 C 0.03 0.40 6.03 37.16 0.22 0.63 16 4 C 0.12 1.90 6.06 -4.04 -0.02 1.88 16 5 N -0.98 -18.48 2.83 -115.67 -0.33 -18.81 16 6 C 0.26 6.04 5.04 -5.20 -0.03 6.02 16 7 C -0.53 -14.21 9.33 -34.44 -0.32 -14.53 16 8 H 0.06 1.60 7.82 -52.48 -0.41 1.19 16 9 C 0.06 1.75 5.45 -17.82 -0.10 1.65 16 10 N -0.89 -25.56 13.29 55.43 0.74 -24.82 16 11 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 13 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 14 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 15 S 2.77 49.30 5.97 -107.50 -0.64 48.66 16 16 O -0.96 -21.46 17.30 -57.17 -0.99 -22.45 16 17 O -1.00 -18.20 16.05 -57.17 -0.92 -19.12 16 18 N -1.12 -14.06 5.47 -4.78 -0.03 -14.09 16 19 C 0.14 1.45 2.34 -67.80 -0.16 1.30 16 20 H 0.10 1.10 5.17 -51.93 -0.27 0.83 16 21 C -0.13 -1.15 5.65 -26.51 -0.15 -1.30 16 22 C -0.14 -1.16 6.03 -28.10 -0.17 -1.33 16 23 C 0.52 5.64 7.71 -12.04 -0.09 5.55 16 24 O -0.56 -8.24 17.78 5.56 0.10 -8.15 16 25 N -0.71 -6.53 5.27 -61.49 -0.32 -6.85 16 26 C 0.09 0.80 6.06 -4.49 -0.03 0.78 16 27 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 28 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.03 0.31 6.28 -51.93 -0.33 -0.02 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.04 0.51 3.22 -51.93 -0.17 0.35 16 32 H 0.10 1.66 8.11 -51.93 -0.42 1.24 16 33 H 0.09 1.34 6.87 -51.93 -0.36 0.98 16 34 H 0.05 1.21 6.57 -51.93 -0.34 0.87 16 35 H 0.04 0.91 7.65 -51.93 -0.40 0.51 16 36 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 37 H 0.42 4.45 8.96 -34.47 -0.31 4.14 16 38 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.08 0.58 8.13 -51.93 -0.42 0.15 16 40 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 41 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.40 3.33 8.75 -40.82 -0.36 2.97 16 43 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 44 H 0.10 1.00 4.85 -51.93 -0.25 0.74 16 LS Contribution 361.47 15.07 5.45 5.45 Total: -1.00 -35.39 361.47 -8.16 -43.55 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -6.12 Total: 3.86 kcal Atomic # 6 Polarization: 1.76 SS G_CDS: 0.23 Total: 2.00 kcal Atomic # 7 Polarization: -64.62 SS G_CDS: 0.06 Total: -64.56 kcal Atomic # 8 Polarization: -53.27 SS G_CDS: -2.11 Total: -55.38 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: 49.30 SS G_CDS: -0.64 Total: 48.66 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -35.39 -8.16 -43.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337101550.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.882 kcal (2) G-P(sol) polarization free energy of solvation -35.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds