Wall clock time and date at job start Tue Mar 31 2020 19:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42901 * 113.99613 * 2 1 4 4 C 1.52998 * 109.46985 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.47095 * 65.00088 * 4 3 2 6 6 C 1.46492 * 120.00347 * 275.00325 * 5 4 3 7 7 C 1.50705 * 109.46992 * 279.42026 * 6 5 4 8 8 H 1.08006 * 119.99954 * 4.75496 * 7 6 5 9 9 C 1.37874 * 119.99845 * 184.75781 * 7 6 5 10 10 N 1.31511 * 120.00327 * 5.28562 * 9 7 6 11 11 Si 1.86806 * 119.99810 * 185.28470 * 9 7 6 12 12 H 1.48495 * 109.47304 * 94.98062 * 11 9 7 13 13 H 1.48500 * 109.46857 * 214.98481 * 11 9 7 14 14 H 1.48498 * 109.47082 * 334.97765 * 11 9 7 15 15 S 1.65604 * 119.99353 * 94.99868 * 5 4 3 16 16 O 1.42112 * 106.39657 * 149.23056 * 15 5 4 17 17 O 1.42099 * 106.40777 * 16.31296 * 15 5 4 18 18 N 1.65599 * 107.21917 * 262.76664 * 15 5 4 19 19 C 1.46494 * 119.99832 * 67.93114 * 18 15 5 20 20 H 1.09002 * 109.60480 * 358.22324 * 19 18 15 21 21 C 1.53347 * 109.73781 * 118.63291 * 19 18 15 22 22 C 1.53072 * 108.42670 * 187.36908 * 21 19 18 23 23 C 1.50182 * 109.88999 * 311.09954 * 22 21 19 24 24 O 1.21278 * 118.24419 * 197.55766 * 23 22 21 25 25 N 1.32951 * 123.39147 * 17.52843 * 23 22 21 26 26 C 1.45752 * 124.41561 * 357.87958 * 25 23 22 27 27 H 1.09003 * 109.46949 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47251 * 299.99015 * 1 2 3 29 29 H 1.08998 * 109.47574 * 59.99598 * 1 2 3 30 30 H 1.09002 * 109.46700 * 60.00578 * 3 2 1 31 31 H 1.08998 * 109.47662 * 300.00569 * 3 2 1 32 32 H 1.09005 * 109.47274 * 305.00528 * 4 3 2 33 33 H 1.09002 * 109.47398 * 185.00099 * 4 3 2 34 34 H 1.08994 * 109.47060 * 39.41468 * 6 5 4 35 35 H 1.08994 * 109.47493 * 159.42143 * 6 5 4 36 36 H 0.97005 * 120.00092 * 179.97438 * 10 9 7 37 37 H 0.97002 * 120.00137 * 247.92906 * 18 15 5 38 38 H 1.08997 * 109.67609 * 307.10006 * 21 19 18 39 39 H 1.08996 * 109.67636 * 67.63249 * 21 19 18 40 40 H 1.09001 * 109.39991 * 71.22608 * 22 21 19 41 41 H 1.08993 * 109.40325 * 190.96849 * 22 21 19 42 42 H 0.97000 * 117.64265 * 177.87272 * 25 23 22 43 43 H 1.08998 * 109.30265 * 258.75868 * 26 25 23 44 44 H 1.09003 * 109.30332 * 139.17515 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9756 0.5645 -1.2528 6 6 4.0003 -0.8948 -1.3783 7 6 5.2498 -1.4336 -0.7304 8 1 5.9162 -0.7660 -0.2044 9 6 5.5420 -2.7787 -0.8092 10 7 4.7879 -3.5740 -1.5360 11 14 7.0093 -3.4715 0.1164 12 1 6.5601 -4.0074 1.4264 13 1 7.6264 -4.5627 -0.6796 14 1 8.0079 -2.3950 0.3381 15 16 4.4452 1.5133 -2.5263 16 8 5.4302 0.7741 -3.2355 17 8 4.6796 2.8104 -1.9954 18 7 3.1437 1.6514 -3.5408 19 6 1.9573 2.3967 -3.1129 20 1 2.1003 2.7587 -2.0947 21 6 1.7251 3.5852 -4.0536 22 6 0.5974 4.4452 -3.4775 23 6 -0.5725 3.5767 -3.1136 24 8 -1.6518 4.1058 -2.9521 25 7 -0.4858 2.2589 -2.9600 26 6 0.7314 1.4840 -3.1653 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 1.6885 1.8463 0.8901 31 1 1.6885 1.8465 -0.8899 32 1 3.8514 0.5682 0.8409 33 1 3.9785 2.1766 0.0889 34 1 3.1246 -1.3167 -0.8854 35 1 3.9909 -1.1689 -2.4332 36 1 4.9937 -4.5204 -1.5917 37 1 3.1669 1.2389 -4.4184 38 1 2.6368 4.1777 -4.1283 39 1 1.4414 3.2216 -5.0412 40 1 0.9552 4.9624 -2.5873 41 1 0.2861 5.1793 -4.2206 42 1 -1.2879 1.7832 -2.6932 43 1 0.6876 0.9953 -4.1387 44 1 0.8123 0.7268 -2.3854 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337101550.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:35 Heat of formation + Delta-G solvation = -181.886422 kcal Electronic energy + Delta-G solvation = -29693.746668 eV Core-core repulsion = 25579.016604 eV Total energy + Delta-G solvation = -4114.730064 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.139 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.41370 -39.21666 -38.38365 -38.07674 -36.94536 -36.81772 -35.14363 -34.51905 -33.29420 -31.04589 -29.25784 -28.45073 -26.95907 -25.47357 -24.58821 -23.69993 -23.28967 -20.77345 -20.22185 -19.05399 -18.47871 -18.38405 -18.12255 -17.43361 -17.27875 -17.13647 -16.90623 -16.41953 -16.25672 -15.85683 -15.71467 -15.13110 -15.12045 -15.00282 -14.43582 -14.30144 -13.92736 -13.59305 -13.55678 -13.44600 -13.19827 -13.13686 -12.97311 -12.90175 -12.88771 -12.66901 -12.54898 -12.49718 -12.22392 -12.03297 -11.93468 -11.78598 -11.62553 -10.92473 -10.60347 -10.51867 -10.39648 -10.16160 -9.72244 -8.12609 -6.20995 -0.33420 1.42200 1.43647 1.53701 1.60090 1.90449 2.32922 2.45823 2.63260 2.98646 3.19517 3.40071 3.47767 3.59578 3.63958 3.79616 3.95111 4.09218 4.19970 4.36201 4.39913 4.43431 4.46139 4.50135 4.62950 4.64462 4.81442 4.87994 4.92338 4.95300 5.05068 5.11839 5.19324 5.43868 5.60823 5.74051 5.77957 5.93921 6.11924 6.23655 6.28317 6.40952 6.87530 7.16004 7.46039 8.94968 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.016685 B = 0.004389 C = 0.003888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.792456 B = 6378.373176 C = 7200.143930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.395 6.395 3 C 0.035 3.965 4 C 0.112 3.888 5 N -0.988 5.988 6 C 0.279 3.721 7 C -0.543 4.543 8 H 0.052 0.948 9 C 0.013 3.987 10 N -0.923 5.923 11 Si 0.951 3.049 12 H -0.270 1.270 13 H -0.283 1.283 14 H -0.273 1.273 15 S 2.792 3.208 16 O -1.009 7.009 17 O -1.001 7.001 18 N -1.107 6.107 19 C 0.130 3.870 20 H 0.098 0.902 21 C -0.129 4.129 22 C -0.132 4.132 23 C 0.518 3.482 24 O -0.603 6.603 25 N -0.703 5.703 26 C 0.091 3.909 27 H 0.085 0.915 28 H 0.050 0.950 29 H 0.049 0.951 30 H 0.079 0.921 31 H 0.059 0.941 32 H 0.081 0.919 33 H 0.109 0.891 34 H 0.041 0.959 35 H 0.015 0.985 36 H 0.264 0.736 37 H 0.427 0.573 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.114 0.886 41 H 0.120 0.880 42 H 0.405 0.595 43 H 0.094 0.906 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.011 12.737 -2.536 17.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.314 6.314 3 C -0.043 4.043 4 C -0.014 4.014 5 N -0.829 5.829 6 C 0.155 3.845 7 C -0.583 4.583 8 H 0.070 0.930 9 C -0.186 4.186 10 N -0.563 5.563 11 Si 0.776 3.224 12 H -0.196 1.196 13 H -0.209 1.209 14 H -0.198 1.198 15 S 2.800 3.200 16 O -0.992 6.992 17 O -0.985 6.985 18 N -0.868 5.868 19 C 0.022 3.978 20 H 0.116 0.884 21 C -0.168 4.168 22 C -0.172 4.172 23 C 0.306 3.694 24 O -0.485 6.485 25 N -0.354 5.354 26 C -0.035 4.035 27 H 0.103 0.897 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.097 0.903 31 H 0.077 0.923 32 H 0.100 0.900 33 H 0.127 0.873 34 H 0.059 0.941 35 H 0.033 0.967 36 H 0.073 0.927 37 H 0.263 0.737 38 H 0.112 0.888 39 H 0.112 0.888 40 H 0.132 0.868 41 H 0.138 0.862 42 H 0.242 0.758 43 H 0.112 0.888 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -10.361 13.233 -2.524 16.995 hybrid contribution 0.079 -1.306 0.234 1.330 sum -10.281 11.926 -2.289 15.912 Atomic orbital electron populations 1.22936 0.80699 1.03189 1.00616 1.88119 1.20290 1.27643 1.95358 1.23397 0.93762 0.85489 1.01660 1.21510 0.92979 0.99337 0.87593 1.57522 1.82009 1.17569 1.25791 1.18604 0.96230 0.73775 0.95859 1.21890 1.08734 0.93409 1.34251 0.93001 1.25652 0.99312 0.97520 0.96137 1.70014 1.40887 1.05189 1.40242 0.85660 0.79778 0.78036 0.78888 1.19589 1.20905 1.19771 1.01469 0.73344 0.72324 0.72885 1.93602 1.58122 1.73439 1.74079 1.93517 1.84993 1.40023 1.79928 1.55775 1.31844 1.68056 1.31095 1.21208 0.84317 0.92036 1.00212 0.88421 1.22091 0.99625 0.95448 0.99638 1.21686 0.92284 0.98169 1.05043 1.20522 0.90565 0.82930 0.75377 1.90757 1.30800 1.72862 1.54103 1.45266 1.13754 1.07356 1.69018 1.21998 0.82903 0.93967 1.04617 0.89651 0.93125 0.93209 0.90323 0.92305 0.90038 0.87303 0.94084 0.96745 0.92716 0.73714 0.88826 0.88783 0.86759 0.86152 0.75840 0.88805 0.89350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 10.65 113.37 1.21 1.65 16 2 O -0.40 -11.35 8.62 -148.98 -1.28 -12.64 16 3 C 0.03 0.85 6.03 71.98 0.43 1.29 16 4 C 0.11 3.47 6.06 86.38 0.52 3.99 16 5 N -0.99 -37.19 2.83 -519.86 -1.47 -38.65 16 6 C 0.28 13.35 5.04 85.64 0.43 13.78 16 7 C -0.54 -29.86 9.33 25.60 0.24 -29.63 16 8 H 0.05 2.85 7.82 -2.91 -0.02 2.83 16 9 C 0.01 0.72 5.45 84.65 0.46 1.19 16 10 N -0.92 -53.47 13.29 21.45 0.28 -53.19 16 11 Si 0.95 44.21 29.54 68.60 2.03 46.24 16 12 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 13 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 14 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 15 S 2.79 97.96 5.97 -56.49 -0.34 97.62 16 16 O -1.01 -45.82 17.30 -128.00 -2.21 -48.04 16 17 O -1.00 -35.28 16.05 -128.00 -2.05 -37.33 16 18 N -1.11 -26.03 5.47 -169.02 -0.92 -26.96 16 19 C 0.13 2.40 2.34 45.08 0.11 2.51 16 20 H 0.10 1.89 5.17 -2.39 -0.01 1.87 16 21 C -0.13 -1.79 5.65 30.73 0.17 -1.62 16 22 C -0.13 -1.85 6.03 29.71 0.18 -1.67 16 23 C 0.52 10.08 7.71 87.78 0.68 10.76 16 24 O -0.60 -16.80 17.78 -3.02 -0.05 -16.86 16 25 N -0.70 -11.19 5.27 -467.85 -2.47 -13.65 16 26 C 0.09 1.48 6.06 86.49 0.52 2.00 16 27 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.05 0.82 6.28 -2.39 -0.02 0.80 16 30 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.06 1.24 3.22 -2.39 -0.01 1.24 16 32 H 0.08 2.78 8.11 -2.38 -0.02 2.76 16 33 H 0.11 2.99 6.87 -2.39 -0.02 2.97 16 34 H 0.04 2.04 6.57 -2.39 -0.02 2.02 16 35 H 0.01 0.75 7.65 -2.39 -0.02 0.74 16 36 H 0.26 14.47 8.31 -92.70 -0.77 13.70 16 37 H 0.43 8.46 8.96 -96.74 -0.87 7.60 16 38 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.09 1.05 8.13 -2.39 -0.02 1.03 16 40 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.41 5.88 8.75 -92.71 -0.81 5.06 16 43 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 44 H 0.09 1.65 4.85 -2.39 -0.01 1.64 16 Total: -1.00 -76.79 361.47 -4.16 -80.95 By element: Atomic # 1 Polarization: 18.89 SS G_CDS: -0.62 Total: 18.26 kcal Atomic # 6 Polarization: -0.72 SS G_CDS: 4.96 Total: 4.24 kcal Atomic # 7 Polarization: -127.88 SS G_CDS: -4.58 Total: -132.45 kcal Atomic # 8 Polarization: -109.26 SS G_CDS: -5.61 Total: -114.86 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Atomic # 16 Polarization: 97.96 SS G_CDS: -0.34 Total: 97.62 kcal Total: -76.79 -4.16 -80.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337101550.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.932 kcal (2) G-P(sol) polarization free energy of solvation -76.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds