Wall clock time and date at job start Tue Mar 31 2020 19:17:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42898 * 1
3 3 C 1.42910 * 113.99846 * 2 1
4 4 C 1.52992 * 109.46969 * 179.97438 * 3 2 1
5 5 N 1.46512 * 109.46734 * 65.00447 * 4 3 2
6 6 C 1.46500 * 119.99976 * 84.99881 * 5 4 3
7 7 C 1.50706 * 109.46953 * 84.99489 * 6 5 4
8 8 H 1.07999 * 120.00193 * 0.02562 * 7 6 5
9 9 C 1.37879 * 119.99398 * 179.97438 * 7 6 5
10 10 N 1.31514 * 119.99350 * 180.02562 * 9 7 6
11 11 Si 1.86798 * 120.00608 * 0.02562 * 9 7 6
12 12 H 1.48493 * 109.47326 * 270.00340 * 11 9 7
13 13 H 1.48506 * 109.46545 * 30.00090 * 11 9 7
14 14 H 1.48498 * 109.47210 * 149.99801 * 11 9 7
15 15 S 1.65597 * 119.99992 * 264.99569 * 5 4 3
16 16 O 1.42106 * 106.40083 * 23.54132 * 15 5 4
17 17 O 1.42091 * 106.40126 * 156.46108 * 15 5 4
18 18 N 1.65601 * 107.21840 * 270.00132 * 15 5 4
19 19 C 1.46500 * 119.99913 * 65.00335 * 18 15 5
20 20 H 1.09003 * 109.60652 * 335.31945 * 19 18 15
21 21 C 1.53353 * 109.60399 * 214.99920 * 19 18 15
22 22 C 1.53065 * 108.42621 * 172.70997 * 21 19 18
23 23 C 1.50179 * 109.89255 * 48.90213 * 22 21 19
24 24 O 1.21275 * 118.24682 * 162.43866 * 23 22 21
25 25 N 1.33352 * 123.50510 * 342.41433 * 23 22 21
26 26 C 1.45756 * 124.10891 * 2.22361 * 25 23 22
27 27 H 1.09005 * 109.47442 * 299.99996 * 1 2 3
28 28 H 1.09004 * 109.47374 * 59.99654 * 1 2 3
29 29 H 1.09000 * 109.46981 * 179.97438 * 1 2 3
30 30 H 1.09004 * 109.46710 * 60.00553 * 3 2 1
31 31 H 1.09001 * 109.47164 * 300.00751 * 3 2 1
32 32 H 1.08999 * 109.47787 * 305.00829 * 4 3 2
33 33 H 1.09003 * 109.47220 * 185.00287 * 4 3 2
34 34 H 1.09000 * 109.47175 * 324.99918 * 6 5 4
35 35 H 1.08993 * 109.47452 * 204.99709 * 6 5 4
36 36 H 0.97005 * 119.99661 * 179.97438 * 10 9 7
37 37 H 0.96996 * 120.00286 * 244.99915 * 18 15 5
38 38 H 1.08999 * 109.66770 * 292.44959 * 21 19 18
39 39 H 1.08999 * 109.66927 * 52.97651 * 21 19 18
40 40 H 1.08998 * 109.39964 * 169.02788 * 22 21 19
41 41 H 1.08993 * 109.40197 * 288.76925 * 22 21 19
42 42 H 0.96999 * 117.94772 * 182.22311 * 25 23 22
43 43 H 1.08998 * 109.30019 * 220.60850 * 26 25 23
44 44 H 1.09005 * 109.30257 * 101.23939 * 26 25 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0102 1.3056 0.0000
4 6 3.5354 1.1848 0.0006
5 7 3.9765 0.5641 -1.2510
6 6 4.1826 1.3884 -2.4445
7 6 5.5699 1.9764 -2.4154
8 1 6.2320 1.7577 -1.5907
9 6 5.9941 2.7928 -3.4424
10 7 7.2049 3.3056 -3.4172
11 14 4.8493 3.1706 -4.8692
12 1 5.0335 2.1528 -5.9346
13 1 3.4421 3.1423 -4.3955
14 1 5.1619 4.5172 -5.4116
15 16 4.2423 -1.0691 -1.3167
16 8 3.4688 -1.6438 -0.2723
17 8 4.1064 -1.4432 -2.6807
18 7 5.8293 -1.3239 -0.9179
19 6 6.3070 -1.0009 0.4288
20 1 5.6659 -0.2385 0.8713
21 6 7.7476 -0.4806 0.3527
22 6 8.1557 0.0186 1.7409
23 6 7.8185 -1.0162 2.7757
24 8 8.3524 -0.9372 3.8617
25 7 6.9630 -2.0171 2.5643
26 6 6.2864 -2.2600 1.2963
27 1 -0.3634 0.5138 0.8900
28 1 -0.3634 0.5139 -0.8900
29 1 -0.3633 -1.0277 -0.0005
30 1 1.6886 1.8464 0.8901
31 1 1.6885 1.8465 -0.8899
32 1 3.8508 0.5685 0.8426
33 1 3.9784 2.1767 0.0903
34 1 3.4473 2.1928 -2.4619
35 1 4.0679 0.7720 -3.3361
36 1 7.5036 3.8797 -4.1399
37 1 6.4425 -1.6870 -1.5759
38 1 8.4127 -1.2864 0.0423
39 1 7.8043 0.3391 -0.3634
40 1 9.2287 0.2095 1.7560
41 1 7.6218 0.9421 1.9649
42 1 6.7795 -2.6214 3.3005
43 1 5.2529 -2.5480 1.4889
44 1 6.7903 -3.0696 0.7683
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000337101551.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:17:39
Heat of formation + Delta-G solvation = -182.965351 kcal
Electronic energy + Delta-G solvation = -29344.263511 eV
Core-core repulsion = 25229.486661 eV
Total energy + Delta-G solvation = -4114.776850 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 335.139 amu
Computer time = 1.15 seconds
Orbital eigenvalues (eV)
-41.29293 -39.04013 -38.40573 -37.97185 -37.02065 -36.71544 -35.04450 -34.48834
-33.23379 -31.26382 -29.10363 -28.79125 -26.97902 -25.41767 -24.43667 -23.52347
-22.95905 -20.68906 -20.15770 -19.01987 -18.67219 -18.36105 -18.15581 -17.59073
-17.17091 -17.01895 -16.67423 -16.42290 -16.18345 -15.75820 -15.56320 -15.19484
-15.16966 -15.03246 -14.46971 -14.34063 -14.04278 -13.75068 -13.54952 -13.45761
-13.11592 -13.01446 -12.98038 -12.88782 -12.82396 -12.76880 -12.49960 -12.32875
-12.18062 -11.98946 -11.93695 -11.67868 -11.57931 -10.91224 -10.71118 -10.52188
-10.47709 -10.08138 -9.71886 -8.22293 -6.24227 -0.19941 1.39233 1.44496
1.49132 1.59830 1.96106 2.32897 2.39376 2.73656 3.02829 3.13432
3.46494 3.61009 3.64466 3.72567 3.91102 4.00356 4.22416 4.23416
4.32630 4.38838 4.52824 4.58089 4.59300 4.63808 4.67692 4.87578
4.89109 4.93214 4.93931 4.95264 5.05419 5.13984 5.24810 5.42955
5.54492 5.77916 5.81714 6.14091 6.30148 6.36595 6.41309 6.82417
7.18114 7.39995 8.91690
Molecular weight = 335.14amu
Principal moments of inertia in cm(-1)
A = 0.009501 B = 0.005670 C = 0.004206
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2946.382836 B = 4937.259504 C = 6656.260487
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.023 3.977
2 O -0.400 6.400
3 C 0.035 3.965
4 C 0.125 3.875
5 N -0.985 5.985
6 C 0.222 3.778
7 C -0.527 4.527
8 H 0.068 0.932
9 C 0.027 3.973
10 N -0.933 5.933
11 Si 0.913 3.087
12 H -0.277 1.277
13 H -0.246 1.246
14 H -0.285 1.285
15 S 2.797 3.203
16 O -0.972 6.972
17 O -1.021 7.021
18 N -1.109 6.109
19 C 0.144 3.856
20 H 0.090 0.910
21 C -0.124 4.124
22 C -0.129 4.129
23 C 0.520 3.480
24 O -0.604 6.604
25 N -0.703 5.703
26 C 0.094 3.906
27 H 0.057 0.943
28 H 0.040 0.960
29 H 0.087 0.913
30 H 0.083 0.917
31 H 0.049 0.951
32 H 0.089 0.911
33 H 0.105 0.895
34 H 0.043 0.957
35 H 0.029 0.971
36 H 0.264 0.736
37 H 0.423 0.577
38 H 0.089 0.911
39 H 0.081 0.919
40 H 0.113 0.887
41 H 0.110 0.890
42 H 0.408 0.592
43 H 0.095 0.905
44 H 0.092 0.908
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.660 -7.296 8.583 13.087
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.073 4.073
2 O -0.319 6.319
3 C -0.043 4.043
4 C 0.000 4.000
5 N -0.825 5.825
6 C 0.097 3.903
7 C -0.566 4.566
8 H 0.086 0.914
9 C -0.173 4.173
10 N -0.573 5.573
11 Si 0.738 3.262
12 H -0.203 1.203
13 H -0.169 1.169
14 H -0.211 1.211
15 S 2.805 3.195
16 O -0.955 6.955
17 O -1.006 7.006
18 N -0.869 5.869
19 C 0.035 3.965
20 H 0.108 0.892
21 C -0.163 4.163
22 C -0.169 4.169
23 C 0.308 3.692
24 O -0.487 6.487
25 N -0.354 5.354
26 C -0.032 4.032
27 H 0.076 0.924
28 H 0.059 0.941
29 H 0.105 0.895
30 H 0.101 0.899
31 H 0.067 0.933
32 H 0.107 0.893
33 H 0.123 0.877
34 H 0.061 0.939
35 H 0.047 0.953
36 H 0.073 0.927
37 H 0.258 0.742
38 H 0.108 0.892
39 H 0.099 0.901
40 H 0.131 0.869
41 H 0.128 0.872
42 H 0.244 0.756
43 H 0.113 0.887
44 H 0.110 0.890
Dipole moment (debyes) X Y Z Total
from point charges -6.935 -7.759 8.735 13.586
hybrid contribution 0.074 0.627 -1.057 1.231
sum -6.861 -7.132 7.678 12.525
Atomic orbital electron populations
1.22887 0.80603 1.03184 1.00619 1.88078 1.20515 1.27846 1.95482
1.23162 0.94392 0.85237 1.01499 1.21450 0.92606 1.01241 0.84735
1.57385 1.81106 1.26257 1.17745 1.19301 0.96291 0.91408 0.83284
1.21671 0.98715 1.28617 1.07629 0.91358 1.25501 0.95967 0.95685
1.00136 1.69988 1.18972 1.34265 1.34103 0.86226 0.81417 0.77625
0.80885 1.20265 1.16911 1.21056 1.01357 0.73137 0.72870 0.72118
1.93609 1.68092 1.75775 1.58008 1.93521 1.86457 1.83151 1.37430
1.55781 1.30832 1.80377 1.19896 1.20927 0.97544 0.96293 0.81698
0.89250 1.21936 0.94723 1.02859 0.96761 1.21612 1.05293 0.97805
0.92221 1.20523 0.77669 0.82405 0.88600 1.90730 1.53820 1.76351
1.27761 1.45308 1.44214 1.30470 1.15444 1.22026 0.99225 0.98093
0.83877 0.92434 0.94088 0.89494 0.89879 0.93288 0.89252 0.87658
0.93859 0.95319 0.92670 0.74227 0.89217 0.90076 0.86919 0.87187
0.75584 0.88668 0.89035
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.52 11.01 113.37 1.25 1.77 16
2 O -0.40 -11.97 8.76 -130.61 -1.14 -13.12 16
3 C 0.04 0.92 6.28 71.98 0.45 1.38 16
4 C 0.13 3.56 5.53 86.37 0.48 4.04 16
5 N -0.99 -34.72 2.77 -519.83 -1.44 -36.17 16
6 C 0.22 9.35 4.50 85.63 0.39 9.74 16
7 C -0.53 -25.50 9.94 25.60 0.25 -25.24 16
8 H 0.07 3.44 8.06 -2.91 -0.02 3.42 16
9 C 0.03 1.37 5.47 84.66 0.46 1.84 16
10 N -0.93 -52.14 13.96 21.45 0.30 -51.84 16
11 Si 0.91 40.45 27.47 68.60 1.88 42.33 16
12 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16
13 H -0.25 -10.01 6.54 99.48 0.65 -9.36 16
14 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16
15 S 2.80 96.78 5.97 -56.49 -0.34 96.44 16
16 O -0.97 -33.67 14.81 -120.24 -1.78 -35.45 16
17 O -1.02 -43.30 16.69 -128.00 -2.14 -45.44 16
18 N -1.11 -30.17 5.54 -169.01 -0.94 -31.11 16
19 C 0.14 3.33 2.75 45.08 0.12 3.45 16
20 H 0.09 2.10 6.21 -2.39 -0.01 2.09 16
21 C -0.12 -2.78 5.57 30.73 0.17 -2.61 16
22 C -0.13 -2.85 6.03 29.71 0.18 -2.67 16
23 C 0.52 13.02 7.71 87.71 0.68 13.70 16
24 O -0.60 -19.90 17.78 -3.02 -0.05 -19.96 16
25 N -0.70 -14.08 5.45 -467.32 -2.55 -16.63 16
26 C 0.09 1.79 6.78 86.49 0.59 2.38 16
27 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16
28 H 0.04 0.85 8.14 -2.38 -0.02 0.83 16
29 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16
30 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16
31 H 0.05 1.32 8.08 -2.39 -0.02 1.30 16
32 H 0.09 2.25 6.19 -2.39 -0.01 2.24 16
33 H 0.11 2.85 8.11 -2.39 -0.02 2.84 16
34 H 0.04 1.75 7.11 -2.39 -0.02 1.74 16
35 H 0.03 1.31 6.34 -2.39 -0.02 1.29 16
36 H 0.26 14.11 8.31 -92.70 -0.77 13.34 16
37 H 0.42 10.52 8.84 -96.75 -0.86 9.67 16
38 H 0.09 1.74 8.13 -2.39 -0.02 1.72 16
39 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16
40 H 0.11 2.35 8.14 -2.39 -0.02 2.33 16
41 H 0.11 2.35 8.14 -2.39 -0.02 2.33 16
42 H 0.41 7.12 8.80 -92.71 -0.82 6.31 16
43 H 0.10 1.84 7.91 -2.39 -0.02 1.82 16
44 H 0.09 1.46 8.14 -2.38 -0.02 1.44 16
Total: -1.00 -70.85 368.77 -3.87 -74.72
By element:
Atomic # 1 Polarization: 29.13 SS G_CDS: -0.69 Total: 28.43 kcal
Atomic # 6 Polarization: 2.75 SS G_CDS: 5.02 Total: 7.76 kcal
Atomic # 7 Polarization: -131.12 SS G_CDS: -4.62 Total: -135.74 kcal
Atomic # 8 Polarization: -108.84 SS G_CDS: -5.12 Total: -113.96 kcal
Atomic # 14 Polarization: 40.45 SS G_CDS: 1.88 Total: 42.33 kcal
Atomic # 16 Polarization: 96.78 SS G_CDS: -0.34 Total: 96.44 kcal
Total: -70.85 -3.87 -74.72 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000337101551.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -108.243 kcal
(2) G-P(sol) polarization free energy of solvation -70.854 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.097 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.869 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.723 kcal
(6) G-S(sol) free energy of system = (1) + (5) -182.965 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.15 seconds