Wall clock time and date at job start Tue Mar 31 2020 19:02:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35654 * 116.99329 * 2 1 4 4 C 1.38702 * 120.15510 * 0.02562 * 3 2 1 5 5 C 1.38054 * 120.08532 * 180.02562 * 4 3 2 6 6 C 1.38543 * 120.39305 * 359.97438 * 5 4 3 7 7 C 1.37785 * 120.29933 * 0.02562 * 6 5 4 8 8 C 1.39712 * 119.91095 * 359.97438 * 7 6 5 9 9 C 1.47527 * 120.19556 * 179.97438 * 8 7 6 10 10 O 1.21595 * 120.00224 * 180.02562 * 9 8 7 11 11 N 1.34779 * 120.00212 * 0.02562 * 9 8 7 12 12 C 1.46497 * 120.00169 * 179.97438 * 11 9 8 13 13 C 1.50707 * 109.46948 * 180.02562 * 12 11 9 14 14 O 1.21278 * 119.99763 * 0.02562 * 13 12 11 15 15 N 1.34778 * 119.99586 * 179.97438 * 13 12 11 16 16 C 1.46507 * 119.99402 * 180.02562 * 15 13 12 17 17 C 1.50697 * 109.46531 * 180.02562 * 16 15 13 18 18 O 1.21295 * 120.00627 * 359.97438 * 17 16 15 19 19 N 1.34779 * 119.99936 * 179.97438 * 17 16 15 20 20 C 1.37097 * 120.00622 * 180.02562 * 19 17 16 21 21 H 1.07998 * 119.99233 * 359.97438 * 20 19 17 22 22 C 1.38948 * 120.00464 * 180.02562 * 20 19 17 23 23 N 1.31407 * 120.00001 * 180.02562 * 22 20 19 24 24 Si 1.86797 * 119.99729 * 359.97438 * 22 20 19 25 25 H 1.48501 * 109.47542 * 90.00228 * 24 22 20 26 26 H 1.48510 * 109.47067 * 210.00179 * 24 22 20 27 27 H 1.48497 * 109.47522 * 329.99947 * 24 22 20 28 28 H 1.08991 * 109.47362 * 60.00213 * 1 2 3 29 29 H 1.09012 * 109.46665 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47324 * 299.99691 * 1 2 3 31 31 H 1.08001 * 119.95424 * 359.97438 * 4 3 2 32 32 H 1.08003 * 119.80430 * 180.02562 * 5 4 3 33 33 H 1.07998 * 119.85348 * 180.02562 * 6 5 4 34 34 H 1.08000 * 120.04731 * 179.72119 * 7 6 5 35 35 H 0.97003 * 119.99516 * 0.02562 * 11 9 8 36 36 H 1.08996 * 109.47344 * 299.99677 * 12 11 9 37 37 H 1.08992 * 109.47028 * 60.00127 * 12 11 9 38 38 H 0.96994 * 120.00706 * 359.97438 * 15 13 12 39 39 H 1.08996 * 109.46722 * 299.99889 * 16 15 13 40 40 H 1.08992 * 109.47448 * 60.00216 * 16 15 13 41 41 H 0.97003 * 119.99510 * 359.97438 * 19 17 16 42 42 H 0.97004 * 119.99784 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2088 0.0000 4 6 1.2923 2.3740 0.0005 5 6 1.9204 3.6033 0.0000 6 6 3.3035 3.6838 -0.0005 7 6 4.0666 2.5366 -0.0011 8 6 3.4440 1.2858 -0.0005 9 6 4.2550 0.0534 -0.0017 10 8 3.7095 -1.0333 -0.0017 11 7 5.6005 0.1320 -0.0027 12 6 6.4057 -1.0918 -0.0033 13 6 7.8688 -0.7304 -0.0038 14 8 8.2056 0.4346 -0.0032 15 7 8.8029 -1.7021 -0.0039 16 6 10.2252 -1.3507 -0.0038 17 6 11.0535 -2.6096 -0.0045 18 8 10.5094 -3.6937 -0.0045 19 7 12.3990 -2.5310 -0.0051 20 6 13.1526 -3.6763 -0.0063 21 1 12.6681 -4.6414 -0.0063 22 6 14.5397 -3.5952 -0.0063 23 7 15.2620 -4.6930 -0.0080 24 14 15.3777 -1.9257 -0.0055 25 1 15.5999 -1.4840 1.3947 26 1 16.6834 -2.0269 -0.7058 27 1 14.5161 -0.9390 -0.7050 28 1 -0.3633 0.5137 -0.8899 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 0.2137 2.3194 0.0005 32 1 1.3301 4.5078 0.0008 33 1 3.7858 4.6501 -0.0005 34 1 5.1444 2.6040 -0.0060 35 1 6.0356 0.9989 -0.0024 36 1 6.1769 -1.6777 0.8869 37 1 6.1755 -1.6778 -0.8930 38 1 8.5335 -2.6339 -0.0032 39 1 10.4546 -0.7647 -0.8937 40 1 10.4547 -0.7649 0.8862 41 1 12.8341 -1.6641 -0.0054 42 1 16.2304 -4.6363 -0.0084 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344182669.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:50 Heat of formation + Delta-G solvation = -107.019605 kcal Electronic energy + Delta-G solvation = -27039.186719 eV Core-core repulsion = 22792.259172 eV Total energy + Delta-G solvation = -4246.927547 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.93587 -40.01840 -38.99559 -38.29784 -37.65390 -34.80806 -34.45359 -33.85480 -31.96864 -31.83750 -30.53599 -29.22021 -27.72688 -26.82755 -24.46119 -23.78893 -22.41443 -20.76102 -20.57123 -19.73915 -19.12947 -18.60942 -17.80156 -16.84955 -16.64964 -16.25010 -16.15982 -15.97524 -15.58032 -15.26514 -15.14974 -15.02438 -14.96979 -14.68823 -14.17751 -13.91817 -13.82644 -13.31811 -13.12986 -13.07487 -12.63600 -12.62342 -12.54543 -12.22306 -12.06333 -12.03658 -11.59165 -11.52633 -11.27217 -10.67909 -10.11904 -10.07226 -10.03602 -9.74041 -9.52969 -9.30248 -9.05061 -8.83301 -8.63823 -8.34677 -6.44181 -3.97081 0.47542 0.97280 2.49490 2.65446 2.65541 2.87881 2.96142 3.00944 3.09633 3.35676 3.50289 3.50806 4.00101 4.27254 4.31952 4.45757 4.55515 4.65543 4.68344 4.77179 4.85273 4.91000 5.08324 5.09889 5.15033 5.20572 5.23666 5.39147 5.58154 5.69161 5.70843 5.72100 5.82397 5.99621 6.12044 6.24641 6.37366 6.96492 7.33652 7.38860 7.52268 7.95193 8.07518 8.12768 8.40658 8.77898 9.25563 9.58297 10.67842 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.029398 B = 0.001771 C = 0.001673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.216333 B =15810.692846 C =16737.161839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.280 6.280 3 C 0.186 3.814 4 C -0.223 4.223 5 C -0.053 4.053 6 C -0.167 4.167 7 C -0.045 4.045 8 C -0.171 4.171 9 C 0.562 3.438 10 O -0.519 6.519 11 N -0.717 5.717 12 C 0.103 3.897 13 C 0.509 3.491 14 O -0.550 6.550 15 N -0.700 5.700 16 C 0.106 3.894 17 C 0.436 3.564 18 O -0.578 6.578 19 N -0.575 5.575 20 C -0.311 4.311 21 H 0.122 0.878 22 C 0.046 3.954 23 N -0.872 5.872 24 Si 0.880 3.120 25 H -0.269 1.269 26 H -0.274 1.274 27 H -0.267 1.267 28 H 0.056 0.944 29 H 0.103 0.897 30 H 0.056 0.944 31 H 0.135 0.865 32 H 0.129 0.871 33 H 0.131 0.869 34 H 0.136 0.864 35 H 0.409 0.591 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.416 0.584 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.374 0.626 42 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.779 18.598 0.030 32.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.191 6.191 3 C 0.137 3.863 4 C -0.241 4.241 5 C -0.071 4.071 6 C -0.186 4.186 7 C -0.064 4.064 8 C -0.175 4.175 9 C 0.349 3.651 10 O -0.396 6.396 11 N -0.374 5.374 12 C -0.024 4.024 13 C 0.295 3.705 14 O -0.428 6.428 15 N -0.354 5.354 16 C -0.021 4.021 17 C 0.222 3.778 18 O -0.462 6.462 19 N -0.212 5.212 20 C -0.440 4.440 21 H 0.140 0.860 22 C -0.159 4.159 23 N -0.511 5.511 24 Si 0.706 3.294 25 H -0.194 1.194 26 H -0.199 1.199 27 H -0.193 1.193 28 H 0.074 0.926 29 H 0.122 0.878 30 H 0.074 0.926 31 H 0.152 0.848 32 H 0.147 0.853 33 H 0.149 0.851 34 H 0.154 0.846 35 H 0.248 0.752 36 H 0.120 0.880 37 H 0.120 0.880 38 H 0.255 0.745 39 H 0.105 0.895 40 H 0.105 0.895 41 H 0.208 0.792 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -26.940 17.540 0.029 32.147 hybrid contribution 0.825 1.388 -0.015 1.615 sum -26.115 18.928 0.014 32.253 Atomic orbital electron populations 1.23179 0.78637 1.04467 1.01160 1.86386 1.20835 1.25359 1.86518 1.19052 0.90904 0.84985 0.91349 1.21255 1.00389 0.92046 1.10444 1.21150 0.94774 0.97115 0.94046 1.21021 0.93810 0.98630 1.05090 1.21281 1.00266 0.90790 0.94028 1.19277 0.90756 0.93896 1.13606 1.17927 0.81430 0.88869 0.76853 1.90841 1.71576 1.28534 1.48604 1.45577 1.05672 1.09881 1.76257 1.21019 0.87548 0.88460 1.05385 1.20415 0.87878 0.85778 0.76464 1.90668 1.82359 1.18881 1.50941 1.45587 1.05480 1.10903 1.73434 1.21014 0.80680 0.96910 1.03526 1.19600 0.83064 0.89861 0.85316 1.90555 1.70998 1.28970 1.55681 1.42118 1.05137 1.08698 1.65259 1.19447 0.88530 0.87227 1.48770 0.86030 1.25072 0.96057 0.97676 0.97082 1.69617 1.06541 1.27046 1.47914 0.86666 0.80306 0.83334 0.79136 1.19376 1.19946 1.19258 0.92575 0.87844 0.92567 0.84762 0.85260 0.85065 0.84608 0.75198 0.87958 0.87951 0.74520 0.89494 0.89480 0.79245 0.91333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.81 101.05 0.99 1.12 16 2 O -0.28 -3.16 8.57 -40.54 -0.35 -3.51 16 3 C 0.19 1.93 6.70 -38.69 -0.26 1.67 16 4 C -0.22 -1.64 9.03 -39.48 -0.36 -1.99 16 5 C -0.05 -0.32 10.03 -39.54 -0.40 -0.72 16 6 C -0.17 -1.11 10.02 -39.63 -0.40 -1.51 16 7 C -0.04 -0.37 9.54 -39.20 -0.37 -0.75 16 8 C -0.17 -1.87 5.89 -104.84 -0.62 -2.49 16 9 C 0.56 7.31 7.76 -12.47 -0.10 7.21 16 10 O -0.52 -8.39 15.16 -16.60 -0.25 -8.64 16 11 N -0.72 -8.26 5.48 -62.53 -0.34 -8.60 16 12 C 0.10 1.19 6.15 -5.19 -0.03 1.16 16 13 C 0.51 6.89 7.90 -10.98 -0.09 6.81 16 14 O -0.55 -8.54 15.67 5.56 0.09 -8.45 16 15 N -0.70 -10.23 5.53 -61.47 -0.34 -10.57 16 16 C 0.11 1.72 6.15 -5.19 -0.03 1.69 16 17 C 0.44 9.26 7.85 -10.99 -0.09 9.17 16 18 O -0.58 -14.23 15.24 5.54 0.08 -14.15 16 19 N -0.57 -13.02 5.09 -10.96 -0.06 -13.08 16 20 C -0.31 -8.45 10.16 -14.93 -0.15 -8.60 16 21 H 0.12 3.77 7.39 -52.49 -0.39 3.38 16 22 C 0.05 1.21 5.50 -17.47 -0.10 1.11 16 23 N -0.87 -24.65 13.96 55.50 0.77 -23.88 16 24 Si 0.88 18.66 27.74 -169.99 -4.71 13.95 16 25 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 26 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 27 H -0.27 -5.16 6.52 56.52 0.37 -4.79 16 28 H 0.06 0.26 7.66 -51.93 -0.40 -0.14 16 29 H 0.10 0.52 8.14 -51.92 -0.42 0.10 16 30 H 0.06 0.26 7.66 -51.93 -0.40 -0.14 16 31 H 0.13 0.66 6.30 -52.49 -0.33 0.33 16 32 H 0.13 0.45 8.06 -52.48 -0.42 0.02 16 33 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 34 H 0.14 0.92 6.40 -52.49 -0.34 0.58 16 35 H 0.41 4.29 5.47 -40.82 -0.22 4.07 16 36 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.42 6.05 7.44 -40.82 -0.30 5.75 16 39 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 40 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 41 H 0.37 7.44 5.76 -40.82 -0.24 7.21 16 42 H 0.28 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 364.87 15.07 5.50 5.50 Total: -1.00 -35.35 364.87 -6.34 -41.69 By element: Atomic # 1 Polarization: 20.61 SS G_CDS: -4.74 Total: 15.87 kcal Atomic # 6 Polarization: 15.86 SS G_CDS: -1.99 Total: 13.87 kcal Atomic # 7 Polarization: -56.16 SS G_CDS: 0.04 Total: -56.12 kcal Atomic # 8 Polarization: -34.33 SS G_CDS: -0.43 Total: -34.75 kcal Atomic # 14 Polarization: 18.66 SS G_CDS: -4.71 Total: 13.95 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -35.35 -6.34 -41.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344182669.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.334 kcal (2) G-P(sol) polarization free energy of solvation -35.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds