Wall clock time and date at job start Tue Mar 31 2020 19:02:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35654 * 116.99329 * 2 1 4 4 C 1.38702 * 120.15510 * 0.02562 * 3 2 1 5 5 C 1.38054 * 120.08532 * 180.02562 * 4 3 2 6 6 C 1.38543 * 120.39305 * 359.97438 * 5 4 3 7 7 C 1.37785 * 120.29933 * 0.02562 * 6 5 4 8 8 C 1.39712 * 119.91095 * 359.97438 * 7 6 5 9 9 C 1.47527 * 120.19556 * 179.97438 * 8 7 6 10 10 O 1.21595 * 120.00224 * 180.02562 * 9 8 7 11 11 N 1.34779 * 120.00212 * 0.02562 * 9 8 7 12 12 C 1.46497 * 120.00169 * 179.97438 * 11 9 8 13 13 C 1.50707 * 109.46948 * 180.02562 * 12 11 9 14 14 O 1.21278 * 119.99763 * 0.02562 * 13 12 11 15 15 N 1.34778 * 119.99586 * 179.97438 * 13 12 11 16 16 C 1.46507 * 119.99402 * 180.02562 * 15 13 12 17 17 C 1.50697 * 109.46531 * 180.02562 * 16 15 13 18 18 O 1.21295 * 120.00627 * 359.97438 * 17 16 15 19 19 N 1.34779 * 119.99936 * 179.97438 * 17 16 15 20 20 C 1.37097 * 120.00622 * 180.02562 * 19 17 16 21 21 H 1.07998 * 119.99233 * 359.97438 * 20 19 17 22 22 C 1.38948 * 120.00464 * 180.02562 * 20 19 17 23 23 N 1.31407 * 120.00001 * 180.02562 * 22 20 19 24 24 Si 1.86797 * 119.99729 * 359.97438 * 22 20 19 25 25 H 1.48501 * 109.47542 * 90.00228 * 24 22 20 26 26 H 1.48510 * 109.47067 * 210.00179 * 24 22 20 27 27 H 1.48497 * 109.47522 * 329.99947 * 24 22 20 28 28 H 1.08991 * 109.47362 * 60.00213 * 1 2 3 29 29 H 1.09012 * 109.46665 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47324 * 299.99691 * 1 2 3 31 31 H 1.08001 * 119.95424 * 359.97438 * 4 3 2 32 32 H 1.08003 * 119.80430 * 180.02562 * 5 4 3 33 33 H 1.07998 * 119.85348 * 180.02562 * 6 5 4 34 34 H 1.08000 * 120.04731 * 179.72119 * 7 6 5 35 35 H 0.97003 * 119.99516 * 0.02562 * 11 9 8 36 36 H 1.08996 * 109.47344 * 299.99677 * 12 11 9 37 37 H 1.08992 * 109.47028 * 60.00127 * 12 11 9 38 38 H 0.96994 * 120.00706 * 359.97438 * 15 13 12 39 39 H 1.08996 * 109.46722 * 299.99889 * 16 15 13 40 40 H 1.08992 * 109.47448 * 60.00216 * 16 15 13 41 41 H 0.97003 * 119.99510 * 359.97438 * 19 17 16 42 42 H 0.97004 * 119.99784 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2088 0.0000 4 6 1.2923 2.3740 0.0005 5 6 1.9204 3.6033 0.0000 6 6 3.3035 3.6838 -0.0005 7 6 4.0666 2.5366 -0.0011 8 6 3.4440 1.2858 -0.0005 9 6 4.2550 0.0534 -0.0017 10 8 3.7095 -1.0333 -0.0017 11 7 5.6005 0.1320 -0.0027 12 6 6.4057 -1.0918 -0.0033 13 6 7.8688 -0.7304 -0.0038 14 8 8.2056 0.4346 -0.0032 15 7 8.8029 -1.7021 -0.0039 16 6 10.2252 -1.3507 -0.0038 17 6 11.0535 -2.6096 -0.0045 18 8 10.5094 -3.6937 -0.0045 19 7 12.3990 -2.5310 -0.0051 20 6 13.1526 -3.6763 -0.0063 21 1 12.6681 -4.6414 -0.0063 22 6 14.5397 -3.5952 -0.0063 23 7 15.2620 -4.6930 -0.0080 24 14 15.3777 -1.9257 -0.0055 25 1 15.5999 -1.4840 1.3947 26 1 16.6834 -2.0269 -0.7058 27 1 14.5161 -0.9390 -0.7050 28 1 -0.3633 0.5137 -0.8899 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 0.2137 2.3194 0.0005 32 1 1.3301 4.5078 0.0008 33 1 3.7858 4.6501 -0.0005 34 1 5.1444 2.6040 -0.0060 35 1 6.0356 0.9989 -0.0024 36 1 6.1769 -1.6777 0.8869 37 1 6.1755 -1.6778 -0.8930 38 1 8.5335 -2.6339 -0.0032 39 1 10.4546 -0.7647 -0.8937 40 1 10.4547 -0.7649 0.8862 41 1 12.8341 -1.6641 -0.0054 42 1 16.2304 -4.6363 -0.0084 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344182669.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:49 Heat of formation + Delta-G solvation = -135.256520 kcal Electronic energy + Delta-G solvation = -27040.411163 eV Core-core repulsion = 22792.259172 eV Total energy + Delta-G solvation = -4248.151991 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.71215 -41.12921 -40.26054 -39.64701 -38.26910 -36.34572 -35.65442 -35.32371 -33.84084 -32.61567 -31.09633 -30.40511 -28.50651 -27.88370 -26.09179 -24.62400 -22.99431 -21.72433 -21.59910 -21.48397 -20.59967 -19.78917 -18.66919 -17.85141 -17.78318 -17.21981 -17.21623 -16.96110 -16.76222 -16.51003 -16.23982 -16.19160 -15.87816 -15.59021 -15.45309 -15.12616 -14.73521 -14.47088 -14.33885 -14.18091 -14.11106 -13.93787 -13.55101 -13.28288 -13.09691 -12.95562 -12.57069 -12.44522 -12.12380 -12.03802 -12.00115 -11.57921 -11.24199 -10.99643 -10.66612 -10.39671 -10.33056 -10.22578 -10.01840 -9.24532 -8.45415 -6.07814 -0.15890 0.40786 1.31203 1.34371 1.39404 1.44401 1.61058 1.79663 1.85005 2.20805 2.30060 2.35353 2.84063 2.85913 3.10829 3.50675 3.68862 3.80887 3.98631 4.00588 4.23153 4.26086 4.33385 4.36632 4.38147 4.39949 4.42945 4.43552 4.52832 4.72490 4.84421 5.13257 5.16290 5.18525 5.32522 5.47218 5.48005 5.75544 5.88202 6.32975 6.35728 6.48283 6.49588 6.78511 6.95886 7.15001 7.28981 7.78410 8.71029 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.029398 B = 0.001771 C = 0.001673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.216333 B =15810.692846 C =16737.161839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.317 6.317 3 C 0.163 3.837 4 C -0.223 4.223 5 C -0.044 4.044 6 C -0.167 4.167 7 C -0.049 4.049 8 C -0.204 4.204 9 C 0.559 3.441 10 O -0.561 6.561 11 N -0.711 5.711 12 C 0.106 3.894 13 C 0.520 3.480 14 O -0.564 6.564 15 N -0.704 5.704 16 C 0.119 3.881 17 C 0.443 3.557 18 O -0.615 6.615 19 N -0.577 5.577 20 C -0.333 4.333 21 H 0.062 0.938 22 C -0.009 4.009 23 N -0.926 5.926 24 Si 0.961 3.039 25 H -0.256 1.256 26 H -0.275 1.275 27 H -0.230 1.230 28 H 0.072 0.928 29 H 0.108 0.892 30 H 0.072 0.928 31 H 0.158 0.842 32 H 0.164 0.836 33 H 0.159 0.841 34 H 0.146 0.854 35 H 0.415 0.585 36 H 0.109 0.891 37 H 0.109 0.891 38 H 0.416 0.584 39 H 0.109 0.891 40 H 0.110 0.890 41 H 0.393 0.607 42 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.770 23.226 -0.005 36.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.229 6.229 3 C 0.115 3.885 4 C -0.241 4.241 5 C -0.062 4.062 6 C -0.184 4.184 7 C -0.067 4.067 8 C -0.208 4.208 9 C 0.348 3.652 10 O -0.441 6.441 11 N -0.367 5.367 12 C -0.021 4.021 13 C 0.306 3.694 14 O -0.444 6.444 15 N -0.358 5.358 16 C -0.009 4.009 17 C 0.230 3.770 18 O -0.501 6.501 19 N -0.217 5.217 20 C -0.462 4.462 21 H 0.080 0.920 22 C -0.209 4.209 23 N -0.566 5.566 24 Si 0.780 3.220 25 H -0.181 1.181 26 H -0.200 1.200 27 H -0.154 1.154 28 H 0.090 0.910 29 H 0.126 0.874 30 H 0.090 0.910 31 H 0.175 0.825 32 H 0.182 0.818 33 H 0.176 0.824 34 H 0.163 0.837 35 H 0.255 0.745 36 H 0.127 0.873 37 H 0.127 0.873 38 H 0.255 0.745 39 H 0.127 0.873 40 H 0.128 0.872 41 H 0.229 0.771 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -27.951 22.206 -0.008 35.699 hybrid contribution 0.974 -0.092 0.001 0.978 sum -26.977 22.114 -0.008 34.883 Atomic orbital electron populations 1.23419 0.76647 1.05385 1.02671 1.86326 1.23169 1.26574 1.86869 1.19382 0.91112 0.85713 0.92263 1.21560 1.01502 0.91452 1.09627 1.21616 0.94975 0.97856 0.91788 1.21405 0.94210 0.99081 1.03747 1.21454 1.00994 0.90421 0.93845 1.19344 0.91193 0.93813 1.16417 1.18364 0.81684 0.89262 0.75877 1.90805 1.72292 1.30157 1.50847 1.45541 1.05386 1.10054 1.75745 1.21008 0.86223 0.88756 1.06093 1.20539 0.88159 0.85150 0.75507 1.90662 1.82679 1.19407 1.51642 1.45605 1.05091 1.11189 1.73893 1.20938 0.80433 0.93844 1.05648 1.20565 0.82906 0.91147 0.82368 1.90547 1.71821 1.31373 1.56395 1.41915 1.05466 1.08089 1.66231 1.19027 0.89501 0.86792 1.50838 0.91977 1.26098 0.96214 1.02930 0.95681 1.69786 1.07181 1.30403 1.49224 0.85423 0.78959 0.77511 0.80066 1.18076 1.19966 1.15359 0.90990 0.87401 0.90980 0.82485 0.81832 0.82371 0.83656 0.74511 0.87283 0.87280 0.74525 0.87278 0.87180 0.77145 0.90937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.15 9.81 113.37 1.11 1.27 16 2 O -0.32 -7.34 8.57 -68.77 -0.59 -7.93 16 3 C 0.16 3.34 6.70 22.84 0.15 3.49 16 4 C -0.22 -2.79 9.03 22.34 0.20 -2.59 16 5 C -0.04 -0.40 10.03 22.30 0.22 -0.17 16 6 C -0.17 -1.71 10.02 22.24 0.22 -1.48 16 7 C -0.05 -0.73 9.54 22.52 0.21 -0.52 16 8 C -0.20 -4.42 5.89 -20.01 -0.12 -4.54 16 9 C 0.56 14.85 7.76 86.69 0.67 15.52 16 10 O -0.56 -18.92 15.16 16.90 0.26 -18.66 16 11 N -0.71 -16.09 5.48 -470.01 -2.57 -18.66 16 12 C 0.11 2.39 6.15 85.64 0.53 2.91 16 13 C 0.52 13.22 7.90 87.66 0.69 13.92 16 14 O -0.56 -16.21 15.67 -3.02 -0.05 -16.26 16 15 N -0.70 -19.51 5.53 -466.78 -2.58 -22.09 16 16 C 0.12 3.55 6.15 85.63 0.53 4.08 16 17 C 0.44 18.57 7.85 87.66 0.69 19.26 16 18 O -0.62 -31.07 15.24 -3.08 -0.05 -31.11 16 19 N -0.58 -25.77 5.09 -306.98 -1.56 -27.34 16 20 C -0.33 -18.66 10.16 84.04 0.85 -17.80 16 21 H 0.06 4.14 7.39 -2.91 -0.02 4.12 16 22 C -0.01 -0.50 5.50 84.93 0.47 -0.03 16 23 N -0.93 -54.14 13.96 21.66 0.30 -53.84 16 24 Si 0.96 37.35 27.74 68.60 1.90 39.25 16 25 H -0.26 -9.48 7.11 99.48 0.71 -8.78 16 26 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 27 H -0.23 -7.52 6.52 99.48 0.65 -6.87 16 28 H 0.07 0.58 7.66 -2.39 -0.02 0.56 16 29 H 0.11 1.09 8.14 -2.38 -0.02 1.07 16 30 H 0.07 0.58 7.66 -2.39 -0.02 0.56 16 31 H 0.16 1.11 6.30 -2.91 -0.02 1.09 16 32 H 0.16 0.32 8.06 -2.91 -0.02 0.30 16 33 H 0.16 0.74 8.06 -2.91 -0.02 0.72 16 34 H 0.15 1.74 6.40 -2.91 -0.02 1.72 16 35 H 0.41 8.30 5.47 -92.71 -0.51 7.79 16 36 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16 37 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16 38 H 0.42 11.89 7.44 -92.71 -0.69 11.20 16 39 H 0.11 2.88 8.14 -2.39 -0.02 2.86 16 40 H 0.11 2.89 8.14 -2.39 -0.02 2.87 16 41 H 0.39 14.52 5.76 -92.71 -0.53 13.98 16 42 H 0.28 15.01 8.31 -92.71 -0.77 14.24 16 Total: -1.00 -82.04 364.87 0.82 -81.22 By element: Atomic # 1 Polarization: 42.80 SS G_CDS: -0.68 Total: 42.12 kcal Atomic # 6 Polarization: 26.86 SS G_CDS: 6.44 Total: 33.30 kcal Atomic # 7 Polarization: -115.51 SS G_CDS: -6.42 Total: -121.93 kcal Atomic # 8 Polarization: -73.54 SS G_CDS: -0.43 Total: -73.96 kcal Atomic # 14 Polarization: 37.35 SS G_CDS: 1.90 Total: 39.25 kcal Total: -82.04 0.82 -81.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344182669.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.036 kcal (2) G-P(sol) polarization free energy of solvation -82.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds