Wall clock time and date at job start Tue Mar 31 2020 18:29:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21288 * 120.00014 * 2 1 4 4 N 1.34777 * 120.00290 * 179.97438 * 2 1 3 5 5 C 1.46496 * 120.00355 * 180.02562 * 4 2 1 6 6 C 1.53001 * 109.47169 * 180.02562 * 5 4 2 7 7 H 1.09006 * 109.51080 * 304.89297 * 6 5 4 8 8 C 1.52878 * 109.62189 * 184.90786 * 6 5 4 9 9 N 1.47161 * 108.60507 * 187.89502 * 8 6 5 10 10 S 1.65597 * 120.97962 * 230.50040 * 9 8 6 11 11 O 1.42096 * 106.40155 * 156.18206 * 10 9 8 12 12 O 1.42096 * 106.40471 * 23.25283 * 10 9 8 13 13 N 1.65610 * 107.21530 * 269.71626 * 10 9 8 14 14 C 1.46497 * 119.99979 * 269.99712 * 13 10 9 15 15 C 1.46495 * 119.99923 * 90.00538 * 13 10 9 16 16 C 1.50703 * 109.47395 * 94.99652 * 15 13 10 17 17 H 1.07994 * 119.99603 * 359.97438 * 16 15 13 18 18 C 1.37875 * 119.99838 * 180.02562 * 16 15 13 19 19 N 1.31513 * 120.00380 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99848 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47297 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.47261 * 239.99776 * 20 18 16 23 23 H 1.48500 * 109.47454 * 119.99769 * 20 18 16 24 24 C 1.47148 * 118.03539 * 50.22862 * 9 8 6 25 25 C 1.53301 * 108.38304 * 309.71054 * 24 9 8 26 26 O 1.42955 * 109.51545 * 64.99956 * 6 5 4 27 27 H 1.08996 * 109.47356 * 270.00228 * 1 2 3 28 28 H 1.09001 * 109.47145 * 29.99872 * 1 2 3 29 29 H 1.09000 * 109.47246 * 150.00177 * 1 2 3 30 30 H 0.97006 * 119.99829 * 0.02562 * 4 2 1 31 31 H 1.08998 * 109.47097 * 59.99934 * 5 4 2 32 32 H 1.09005 * 109.46904 * 299.99935 * 5 4 2 33 33 H 1.09002 * 109.62470 * 68.07398 * 8 6 5 34 34 H 1.09000 * 109.52785 * 307.65648 * 8 6 5 35 35 H 1.08996 * 109.47311 * 270.00671 * 14 13 10 36 36 H 1.09007 * 109.46980 * 30.00592 * 14 13 10 37 37 H 1.08999 * 109.46910 * 149.99797 * 14 13 10 38 38 H 1.09005 * 109.47411 * 334.99587 * 15 13 10 39 39 H 1.08998 * 109.46900 * 214.99666 * 15 13 10 40 40 H 0.97001 * 119.99667 * 0.02562 * 19 18 16 41 41 H 1.08991 * 109.68668 * 69.43839 * 24 9 8 42 42 H 1.08998 * 109.68185 * 189.99438 * 24 9 8 43 43 H 1.09001 * 109.51484 * 172.22819 * 25 24 9 44 44 H 1.08997 * 109.51613 * 292.32976 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6458 -1.1672 0.0011 6 6 4.1558 -2.6097 0.0010 7 1 3.7227 -3.1490 0.8434 8 6 5.6796 -2.6155 0.1248 9 7 6.1611 -3.9927 -0.0681 10 16 7.2020 -4.6911 1.0140 11 8 7.0314 -6.0959 0.8854 12 8 7.0305 -3.9963 2.2416 13 7 8.7404 -4.3580 0.4991 14 6 9.4213 -5.2764 -0.4169 15 6 9.4204 -3.1449 0.9598 16 6 10.2773 -3.4726 2.1555 17 1 10.3115 -4.4833 2.5345 18 6 11.0166 -2.4819 2.7660 19 7 10.9745 -1.2510 2.3048 20 14 12.0793 -2.8882 4.2476 21 1 11.9533 -4.3333 4.5658 22 1 11.6317 -2.0843 5.4132 23 1 13.4973 -2.5700 3.9420 24 6 5.6854 -4.7329 -1.2475 25 6 4.1571 -4.6258 -1.3015 26 8 3.7786 -3.2495 -1.2205 27 1 -0.3634 0.0000 1.0276 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3634 -0.8900 -0.5138 30 1 1.6959 -2.0073 0.0005 31 1 4.0088 -0.6532 0.8911 32 1 4.0095 -0.6535 -0.8889 33 1 5.9678 -2.2610 1.1144 34 1 6.1096 -1.9662 -0.6379 35 1 9.9706 -6.0220 0.1579 36 1 8.6840 -5.7741 -1.0469 37 1 10.1157 -4.7164 -1.0432 38 1 8.6788 -2.3962 1.2386 39 1 10.0482 -2.7540 0.1591 40 1 10.4230 -1.0401 1.5352 41 1 6.1158 -4.3004 -2.1506 42 1 5.9773 -5.7799 -1.1662 43 1 3.7953 -5.0482 -2.2390 44 1 3.7239 -5.1732 -0.4644 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344519113.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:01 Heat of formation + Delta-G solvation = -152.575553 kcal Electronic energy + Delta-G solvation = -28320.928017 eV Core-core repulsion = 24207.468967 eV Total energy + Delta-G solvation = -4113.459050 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.139 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.08576 -39.24980 -36.91404 -35.74871 -35.39849 -35.29146 -34.75178 -32.67204 -32.23459 -30.14370 -27.90500 -27.56139 -25.55981 -24.90163 -23.23569 -22.51403 -21.41882 -20.68027 -18.82646 -17.84976 -17.22215 -17.04552 -16.89862 -16.72490 -16.49579 -15.82294 -15.47772 -15.22351 -14.97953 -14.60750 -14.35007 -13.93834 -13.72972 -13.52058 -13.37884 -13.29299 -12.96814 -12.67108 -12.60891 -12.32840 -12.26272 -12.09204 -11.96668 -11.79600 -11.59728 -11.36714 -11.34634 -11.18405 -10.81648 -10.65506 -10.55044 -10.42052 -10.13426 -10.12072 -9.40566 -9.32130 -8.97305 -8.42427 -8.02220 -6.43924 -4.16220 0.91510 2.44065 2.93887 3.20089 3.35392 3.43095 3.47571 3.61298 3.84520 4.40283 4.50613 4.51110 4.64278 4.67555 4.76390 4.82919 4.93285 4.94349 5.08439 5.13314 5.20113 5.26160 5.32240 5.37672 5.43328 5.47894 5.57659 5.61753 5.78889 5.89249 5.90437 6.13824 6.16022 6.29674 6.43649 6.80618 6.82571 7.08480 7.26101 7.34536 7.94739 8.00354 8.39903 8.75180 9.52786 10.94148 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.013481 B = 0.003456 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2076.540309 B = 8101.014823 C = 9556.724707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.508 3.492 3 O -0.548 6.548 4 N -0.725 5.725 5 C 0.127 3.873 6 C 0.070 3.930 7 H 0.072 0.928 8 C 0.093 3.907 9 N -1.014 6.014 10 S 2.780 3.220 11 O -0.990 6.990 12 O -0.958 6.958 13 N -0.992 5.992 14 C 0.109 3.891 15 C 0.248 3.752 16 C -0.609 4.609 17 H 0.055 0.945 18 C 0.021 3.979 19 N -0.909 5.909 20 Si 1.075 2.925 21 H -0.289 1.289 22 H -0.285 1.285 23 H -0.286 1.286 24 C 0.083 3.917 25 C 0.053 3.947 26 O -0.374 6.374 27 H 0.093 0.907 28 H 0.092 0.908 29 H 0.079 0.921 30 H 0.404 0.596 31 H 0.090 0.910 32 H 0.081 0.919 33 H 0.109 0.891 34 H 0.080 0.920 35 H 0.052 0.948 36 H 0.052 0.948 37 H 0.066 0.934 38 H 0.026 0.974 39 H 0.025 0.975 40 H 0.267 0.733 41 H 0.075 0.925 42 H 0.101 0.899 43 H 0.106 0.894 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.532 -5.157 -9.770 21.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.295 3.705 3 O -0.425 6.425 4 N -0.377 5.377 5 C 0.002 3.998 6 C 0.010 3.990 7 H 0.090 0.910 8 C -0.033 4.033 9 N -0.853 5.853 10 S 2.790 3.210 11 O -0.974 6.974 12 O -0.941 6.941 13 N -0.834 5.834 14 C -0.037 4.037 15 C 0.125 3.875 16 C -0.648 4.648 17 H 0.073 0.927 18 C -0.183 4.183 19 N -0.545 5.545 20 Si 0.903 3.097 21 H -0.215 1.215 22 H -0.211 1.211 23 H -0.212 1.212 24 C -0.043 4.043 25 C -0.025 4.025 26 O -0.292 6.292 27 H 0.111 0.889 28 H 0.111 0.889 29 H 0.098 0.902 30 H 0.238 0.762 31 H 0.108 0.892 32 H 0.099 0.901 33 H 0.127 0.873 34 H 0.098 0.902 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.085 0.915 38 H 0.043 0.957 39 H 0.043 0.957 40 H 0.077 0.923 41 H 0.093 0.907 42 H 0.119 0.881 43 H 0.124 0.876 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -17.352 -4.148 -8.044 19.570 hybrid contribution -0.898 -1.120 -1.337 1.962 sum -18.250 -5.268 -9.381 21.185 Atomic orbital electron populations 1.21868 0.91629 1.04845 1.04768 1.20816 0.90650 0.83379 0.75620 1.90753 1.70815 1.31395 1.49528 1.45962 1.07138 1.09000 1.75648 1.21351 0.80212 0.94225 1.03988 1.22569 0.94831 0.93528 0.88049 0.91033 1.21867 0.93601 0.83224 1.04632 1.58626 1.62659 1.23440 1.40536 1.02082 0.72521 0.73005 0.73412 1.93528 1.86429 1.30526 1.86963 1.93623 1.85488 1.74823 1.40182 1.57543 1.30528 1.34429 1.60895 1.21214 0.97248 0.92886 0.92388 1.19143 0.92599 0.80511 0.95216 1.22331 1.29652 0.97982 1.14851 0.92702 1.25819 0.97614 0.92940 1.01936 1.70773 1.39263 1.19480 1.24961 0.83464 0.75819 0.75128 0.75291 1.21454 1.21082 1.21249 1.22081 0.95698 0.97765 0.88789 1.22918 0.93922 0.82823 1.02841 1.87947 1.79498 1.24032 1.37745 0.88850 0.88892 0.90201 0.76200 0.89195 0.90052 0.87332 0.90177 0.92917 0.92978 0.91478 0.95654 0.95727 0.92255 0.90665 0.88126 0.87577 0.92512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.03 10.30 36.00 0.37 -0.65 16 2 C 0.51 5.36 7.94 -10.99 -0.09 5.27 16 3 O -0.55 -8.45 17.10 5.55 0.09 -8.35 16 4 N -0.72 -6.64 5.50 -60.30 -0.33 -6.97 16 5 C 0.13 1.36 5.35 -4.04 -0.02 1.34 16 6 C 0.07 0.76 2.79 -26.79 -0.07 0.68 16 7 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 8 C 0.09 1.24 5.98 -3.74 -0.02 1.22 16 9 N -1.01 -14.58 3.40 -113.30 -0.39 -14.97 16 10 S 2.78 53.33 6.07 -107.50 -0.65 52.68 16 11 O -0.99 -19.64 15.83 -57.17 -0.91 -20.54 16 12 O -0.96 -22.00 15.72 -57.17 -0.90 -22.89 16 13 N -0.99 -20.24 3.23 -123.05 -0.40 -20.64 16 14 C 0.11 1.84 10.33 59.85 0.62 2.46 16 15 C 0.25 6.06 4.43 -5.19 -0.02 6.04 16 16 C -0.61 -17.14 9.38 -34.44 -0.32 -17.47 16 17 H 0.05 1.58 7.81 -52.49 -0.41 1.17 16 18 C 0.02 0.61 5.46 -17.82 -0.10 0.52 16 19 N -0.91 -27.02 13.65 55.43 0.76 -26.26 16 20 Si 1.07 25.62 29.90 -169.99 -5.08 20.54 16 21 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 24 C 0.08 0.91 6.71 -3.53 -0.02 0.89 16 25 C 0.05 0.49 6.99 37.31 0.26 0.75 16 26 O -0.37 -3.89 10.33 -35.23 -0.36 -4.26 16 27 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.40 2.68 8.47 -40.82 -0.35 2.33 16 31 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.11 1.60 6.94 -51.93 -0.36 1.24 16 34 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 35 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.05 0.71 7.79 -51.93 -0.40 0.31 16 37 H 0.07 1.05 7.94 -51.93 -0.41 0.64 16 38 H 0.03 0.64 7.48 -51.93 -0.39 0.26 16 39 H 0.02 0.61 7.83 -51.93 -0.41 0.20 16 40 H 0.27 7.77 7.22 -40.82 -0.29 7.47 16 41 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.10 1.09 6.95 -51.93 -0.36 0.73 16 43 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 LS Contribution 375.71 15.07 5.66 5.66 Total: -1.00 -37.33 375.71 -8.76 -46.08 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -6.83 Total: -1.12 kcal Atomic # 6 Polarization: 0.46 SS G_CDS: 0.58 Total: 1.04 kcal Atomic # 7 Polarization: -68.47 SS G_CDS: -0.36 Total: -68.83 kcal Atomic # 8 Polarization: -53.98 SS G_CDS: -2.07 Total: -56.05 kcal Atomic # 14 Polarization: 25.62 SS G_CDS: -5.08 Total: 20.54 kcal Atomic # 16 Polarization: 53.33 SS G_CDS: -0.65 Total: 52.68 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -37.33 -8.76 -46.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344519113.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.492 kcal (2) G-P(sol) polarization free energy of solvation -37.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds