Wall clock time and date at job start Tue Mar 31 2020 18:29:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21288 * 120.00014 * 2 1 4 4 N 1.34777 * 120.00290 * 179.97438 * 2 1 3 5 5 C 1.46496 * 120.00355 * 180.02562 * 4 2 1 6 6 C 1.53001 * 109.47169 * 180.02562 * 5 4 2 7 7 H 1.09006 * 109.51080 * 304.89297 * 6 5 4 8 8 C 1.52878 * 109.62189 * 184.90786 * 6 5 4 9 9 N 1.47161 * 108.60507 * 187.89502 * 8 6 5 10 10 S 1.65597 * 120.97962 * 230.50040 * 9 8 6 11 11 O 1.42096 * 106.40155 * 156.18206 * 10 9 8 12 12 O 1.42096 * 106.40471 * 23.25283 * 10 9 8 13 13 N 1.65610 * 107.21530 * 269.71626 * 10 9 8 14 14 C 1.46497 * 119.99979 * 269.99712 * 13 10 9 15 15 C 1.46495 * 119.99923 * 90.00538 * 13 10 9 16 16 C 1.50703 * 109.47395 * 94.99652 * 15 13 10 17 17 H 1.07994 * 119.99603 * 359.97438 * 16 15 13 18 18 C 1.37875 * 119.99838 * 180.02562 * 16 15 13 19 19 N 1.31513 * 120.00380 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99848 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47297 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.47261 * 239.99776 * 20 18 16 23 23 H 1.48500 * 109.47454 * 119.99769 * 20 18 16 24 24 C 1.47148 * 118.03539 * 50.22862 * 9 8 6 25 25 C 1.53301 * 108.38304 * 309.71054 * 24 9 8 26 26 O 1.42955 * 109.51545 * 64.99956 * 6 5 4 27 27 H 1.08996 * 109.47356 * 270.00228 * 1 2 3 28 28 H 1.09001 * 109.47145 * 29.99872 * 1 2 3 29 29 H 1.09000 * 109.47246 * 150.00177 * 1 2 3 30 30 H 0.97006 * 119.99829 * 0.02562 * 4 2 1 31 31 H 1.08998 * 109.47097 * 59.99934 * 5 4 2 32 32 H 1.09005 * 109.46904 * 299.99935 * 5 4 2 33 33 H 1.09002 * 109.62470 * 68.07398 * 8 6 5 34 34 H 1.09000 * 109.52785 * 307.65648 * 8 6 5 35 35 H 1.08996 * 109.47311 * 270.00671 * 14 13 10 36 36 H 1.09007 * 109.46980 * 30.00592 * 14 13 10 37 37 H 1.08999 * 109.46910 * 149.99797 * 14 13 10 38 38 H 1.09005 * 109.47411 * 334.99587 * 15 13 10 39 39 H 1.08998 * 109.46900 * 214.99666 * 15 13 10 40 40 H 0.97001 * 119.99667 * 0.02562 * 19 18 16 41 41 H 1.08991 * 109.68668 * 69.43839 * 24 9 8 42 42 H 1.08998 * 109.68185 * 189.99438 * 24 9 8 43 43 H 1.09001 * 109.51484 * 172.22819 * 25 24 9 44 44 H 1.08997 * 109.51613 * 292.32976 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6458 -1.1672 0.0011 6 6 4.1558 -2.6097 0.0010 7 1 3.7227 -3.1490 0.8434 8 6 5.6796 -2.6155 0.1248 9 7 6.1611 -3.9927 -0.0681 10 16 7.2020 -4.6911 1.0140 11 8 7.0314 -6.0959 0.8854 12 8 7.0305 -3.9963 2.2416 13 7 8.7404 -4.3580 0.4991 14 6 9.4213 -5.2764 -0.4169 15 6 9.4204 -3.1449 0.9598 16 6 10.2773 -3.4726 2.1555 17 1 10.3115 -4.4833 2.5345 18 6 11.0166 -2.4819 2.7660 19 7 10.9745 -1.2510 2.3048 20 14 12.0793 -2.8882 4.2476 21 1 11.9533 -4.3333 4.5658 22 1 11.6317 -2.0843 5.4132 23 1 13.4973 -2.5700 3.9420 24 6 5.6854 -4.7329 -1.2475 25 6 4.1571 -4.6258 -1.3015 26 8 3.7786 -3.2495 -1.2205 27 1 -0.3634 0.0000 1.0276 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3634 -0.8900 -0.5138 30 1 1.6959 -2.0073 0.0005 31 1 4.0088 -0.6532 0.8911 32 1 4.0095 -0.6535 -0.8889 33 1 5.9678 -2.2610 1.1144 34 1 6.1096 -1.9662 -0.6379 35 1 9.9706 -6.0220 0.1579 36 1 8.6840 -5.7741 -1.0469 37 1 10.1157 -4.7164 -1.0432 38 1 8.6788 -2.3962 1.2386 39 1 10.0482 -2.7540 0.1591 40 1 10.4230 -1.0401 1.5352 41 1 6.1158 -4.3004 -2.1506 42 1 5.9773 -5.7799 -1.1662 43 1 3.7953 -5.0482 -2.2390 44 1 3.7239 -5.1732 -0.4644 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344519113.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:01 Heat of formation + Delta-G solvation = -183.847927 kcal Electronic energy + Delta-G solvation = -28322.284088 eV Core-core repulsion = 24207.468967 eV Total energy + Delta-G solvation = -4114.815122 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.139 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.97157 -40.15002 -38.52481 -37.48400 -37.02117 -36.28214 -35.72109 -34.73100 -33.10589 -30.80555 -29.39036 -28.78112 -26.68030 -26.50568 -24.48906 -24.11188 -22.35133 -21.55013 -20.18685 -19.48740 -18.71085 -18.44923 -17.95935 -17.87334 -17.47393 -17.11762 -16.34377 -16.27990 -16.10603 -15.72078 -15.67679 -15.50042 -15.25849 -14.97293 -14.36546 -14.28737 -14.11571 -14.07873 -13.80398 -13.45564 -13.45012 -13.35737 -13.25711 -13.10357 -13.00766 -12.91679 -12.75800 -12.46211 -12.39268 -12.37669 -11.97614 -11.64206 -11.41051 -11.29789 -11.03088 -10.59733 -10.19030 -10.05451 -9.79525 -8.69030 -6.43171 -0.57709 1.49909 1.58896 1.63297 1.75041 1.79224 2.19102 2.37938 2.52379 2.53091 3.10013 3.16499 3.55855 3.66724 3.69789 3.86954 3.93275 3.97599 4.12666 4.18024 4.30166 4.44449 4.51297 4.53117 4.58672 4.60320 4.62945 4.69090 4.74918 4.77755 4.88735 4.91754 4.94547 5.09885 5.19785 5.32753 5.36330 5.67617 5.82236 5.99893 6.16823 6.50546 6.54511 7.24130 7.32819 8.68784 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.013481 B = 0.003456 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2076.540309 B = 8101.014823 C = 9556.724707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.501 3.499 3 O -0.605 6.605 4 N -0.713 5.713 5 C 0.129 3.871 6 C 0.084 3.916 7 H 0.079 0.921 8 C 0.087 3.913 9 N -1.005 6.005 10 S 2.793 3.207 11 O -0.998 6.998 12 O -1.003 7.003 13 N -1.002 6.002 14 C 0.100 3.900 15 C 0.259 3.741 16 C -0.624 4.624 17 H 0.042 0.958 18 C -0.027 4.027 19 N -0.929 5.929 20 Si 1.113 2.887 21 H -0.278 1.278 22 H -0.279 1.279 23 H -0.270 1.270 24 C 0.072 3.928 25 C 0.052 3.948 26 O -0.373 6.373 27 H 0.109 0.891 28 H 0.092 0.908 29 H 0.109 0.891 30 H 0.419 0.581 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.043 0.957 36 H 0.088 0.912 37 H 0.077 0.923 38 H 0.012 0.988 39 H 0.023 0.977 40 H 0.260 0.740 41 H 0.092 0.908 42 H 0.106 0.894 43 H 0.142 0.858 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.157 -6.655 -10.918 23.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.291 3.709 3 O -0.487 6.487 4 N -0.366 5.366 5 C 0.003 3.997 6 C 0.024 3.976 7 H 0.097 0.903 8 C -0.039 4.039 9 N -0.847 5.847 10 S 2.804 3.196 11 O -0.981 6.981 12 O -0.987 6.987 13 N -0.842 5.842 14 C -0.046 4.046 15 C 0.135 3.865 16 C -0.663 4.663 17 H 0.060 0.940 18 C -0.226 4.226 19 N -0.567 5.567 20 Si 0.935 3.065 21 H -0.203 1.203 22 H -0.205 1.205 23 H -0.195 1.195 24 C -0.052 4.052 25 C -0.026 4.026 26 O -0.291 6.291 27 H 0.128 0.872 28 H 0.111 0.889 29 H 0.128 0.872 30 H 0.256 0.744 31 H 0.096 0.904 32 H 0.090 0.910 33 H 0.105 0.895 34 H 0.105 0.895 35 H 0.062 0.938 36 H 0.106 0.894 37 H 0.096 0.904 38 H 0.030 0.970 39 H 0.041 0.959 40 H 0.069 0.931 41 H 0.110 0.890 42 H 0.124 0.876 43 H 0.160 0.840 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -18.994 -5.717 -9.220 21.874 hybrid contribution -0.469 -0.726 -1.082 1.385 sum -19.463 -6.443 -10.302 22.945 Atomic orbital electron populations 1.21885 0.87692 1.06313 1.06232 1.21702 0.92519 0.82575 0.74134 1.90728 1.72290 1.33385 1.52274 1.45893 1.06410 1.09631 1.74674 1.21189 0.81428 0.93999 1.03041 1.22353 0.92741 0.93696 0.88792 0.90269 1.21987 0.95646 0.82568 1.03741 1.58207 1.61403 1.23993 1.41076 1.01449 0.72484 0.72582 0.73128 1.93508 1.86509 1.30954 1.87173 1.93560 1.86064 1.75644 1.43433 1.57511 1.31453 1.33661 1.61612 1.21465 0.98470 0.92396 0.92240 1.18748 0.91885 0.81860 0.94017 1.22671 1.30162 0.97356 1.16102 0.93994 1.27166 0.98700 0.92597 1.04145 1.70875 1.40139 1.20239 1.25399 0.82982 0.75271 0.75625 0.72589 1.20286 1.20502 1.19497 1.22482 0.97382 0.97732 0.87637 1.23143 0.92261 0.82151 1.04997 1.87959 1.79190 1.24871 1.37121 0.87221 0.88921 0.87223 0.74414 0.90353 0.91043 0.89509 0.89506 0.93803 0.89401 0.90446 0.97040 0.95925 0.93078 0.89009 0.87584 0.84016 0.92007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.55 10.30 71.23 0.73 -0.82 16 2 C 0.50 10.14 7.94 87.65 0.70 10.83 16 3 O -0.61 -19.06 17.10 -3.05 -0.05 -19.11 16 4 N -0.71 -12.11 5.50 -463.06 -2.55 -14.66 16 5 C 0.13 2.73 5.35 86.38 0.46 3.19 16 6 C 0.08 1.73 2.79 30.55 0.09 1.82 16 7 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 8 C 0.09 2.31 5.98 86.21 0.52 2.82 16 9 N -1.01 -27.90 3.40 -512.36 -1.74 -29.64 16 10 S 2.79 106.94 6.07 -56.49 -0.34 106.60 16 11 O -1.00 -38.52 15.83 -128.00 -2.03 -40.55 16 12 O -1.00 -47.41 15.72 -128.00 -2.01 -49.42 16 13 N -1.00 -40.93 3.23 -543.23 -1.75 -42.69 16 14 C 0.10 3.26 10.33 127.77 1.32 4.58 16 15 C 0.26 12.97 4.43 85.63 0.38 13.35 16 16 C -0.62 -35.79 9.38 25.60 0.24 -35.55 16 17 H 0.04 2.45 7.81 -2.91 -0.02 2.43 16 18 C -0.03 -1.55 5.46 84.65 0.46 -1.09 16 19 N -0.93 -56.17 13.65 21.45 0.29 -55.88 16 20 Si 1.11 51.51 29.90 68.60 2.05 53.57 16 21 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 22 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 23 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 24 C 0.07 1.40 6.71 86.36 0.58 1.98 16 25 C 0.05 0.77 6.99 72.08 0.50 1.27 16 26 O -0.37 -6.73 10.33 -148.98 -1.54 -8.27 16 27 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.42 4.50 8.47 -92.70 -0.79 3.72 16 31 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 33 H 0.09 2.70 6.94 -2.39 -0.02 2.69 16 34 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 35 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.09 2.21 7.79 -2.38 -0.02 2.19 16 37 H 0.08 2.34 7.94 -2.39 -0.02 2.32 16 38 H 0.01 0.61 7.48 -2.38 -0.02 0.60 16 39 H 0.02 1.14 7.83 -2.39 -0.02 1.12 16 40 H 0.26 15.54 7.22 -92.71 -0.67 14.87 16 41 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.11 1.97 6.95 -2.39 -0.02 1.96 16 43 H 0.14 1.16 8.14 -2.39 -0.02 1.14 16 44 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 Total: -1.00 -82.67 375.71 -3.38 -86.04 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: 0.32 Total: 11.63 kcal Atomic # 6 Polarization: -3.59 SS G_CDS: 5.98 Total: 2.38 kcal Atomic # 7 Polarization: -137.11 SS G_CDS: -5.75 Total: -142.86 kcal Atomic # 8 Polarization: -111.73 SS G_CDS: -5.63 Total: -117.36 kcal Atomic # 14 Polarization: 51.51 SS G_CDS: 2.05 Total: 53.57 kcal Atomic # 16 Polarization: 106.94 SS G_CDS: -0.34 Total: 106.60 kcal Total: -82.67 -3.38 -86.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344519113.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.805 kcal (2) G-P(sol) polarization free energy of solvation -82.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds