Wall clock time and date at job start Tue Mar 31 2020 18:29:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.21284 * 120.00326 * 2 1 4 4 N 1.34782 * 120.00034 * 180.02562 * 2 1 3 5 5 C 1.46502 * 119.99897 * 180.02562 * 4 2 1 6 6 C 1.53003 * 109.46883 * 179.97438 * 5 4 2 7 7 H 1.09000 * 109.51483 * 60.09452 * 6 5 4 8 8 C 1.53295 * 109.55201 * 180.22536 * 6 5 4 9 9 N 1.47155 * 108.37983 * 172.25023 * 8 6 5 10 10 S 1.65598 * 120.98013 * 129.49079 * 9 8 6 11 11 O 1.42106 * 106.39866 * 203.53399 * 10 9 8 12 12 O 1.42094 * 106.40117 * 336.45053 * 10 9 8 13 13 N 1.65595 * 107.22299 * 89.99634 * 10 9 8 14 14 C 1.46499 * 120.00097 * 270.00003 * 13 10 9 15 15 C 1.46503 * 119.99994 * 89.99664 * 13 10 9 16 16 C 1.50699 * 109.47116 * 95.00253 * 15 13 10 17 17 H 1.08005 * 119.99897 * 0.02562 * 16 15 13 18 18 C 1.37871 * 119.99945 * 179.97438 * 16 15 13 19 19 N 1.31512 * 120.00507 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 120.00001 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.47197 * 90.00081 * 20 18 16 22 22 H 1.48499 * 109.47539 * 210.00150 * 20 18 16 23 23 H 1.48499 * 109.47098 * 330.00303 * 20 18 16 24 24 C 1.47157 * 118.03509 * 309.45990 * 9 8 6 25 25 C 1.53289 * 108.38491 * 50.54082 * 24 9 8 26 26 O 1.42962 * 109.22360 * 307.69791 * 25 24 9 27 27 H 1.09005 * 109.47343 * 180.02562 * 1 2 3 28 28 H 1.09009 * 109.46855 * 299.99530 * 1 2 3 29 29 H 1.09003 * 109.47439 * 59.99737 * 1 2 3 30 30 H 0.96991 * 119.99866 * 359.97438 * 4 2 1 31 31 H 1.08993 * 109.47261 * 59.99196 * 5 4 2 32 32 H 1.09003 * 109.46871 * 299.99082 * 5 4 2 33 33 H 1.08993 * 109.67897 * 291.96749 * 8 6 5 34 34 H 1.08992 * 109.68211 * 52.49170 * 8 6 5 35 35 H 1.09000 * 109.47437 * 89.99604 * 14 13 10 36 36 H 1.09000 * 109.47428 * 209.99860 * 14 13 10 37 37 H 1.09003 * 109.46673 * 329.99992 * 14 13 10 38 38 H 1.09001 * 109.47104 * 215.00310 * 15 13 10 39 39 H 1.08995 * 109.47404 * 335.00282 * 15 13 10 40 40 H 0.96996 * 120.00694 * 179.97438 * 19 18 16 41 41 H 1.08997 * 109.67701 * 170.26396 * 24 9 8 42 42 H 1.08996 * 109.68091 * 290.77745 * 24 9 8 43 43 H 1.08994 * 109.51313 * 187.77065 * 25 24 9 44 44 H 1.09001 * 109.51407 * 67.61512 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.6459 -1.1672 0.0000 6 6 4.1559 -2.6097 -0.0001 7 1 3.7946 -3.1236 -0.8909 8 6 5.6888 -2.6119 0.0062 9 7 6.1500 -3.9966 0.1943 10 16 7.2788 -4.6638 -0.8171 11 8 7.1002 -6.0718 -0.7446 12 8 7.2091 -3.9333 -2.0338 13 7 8.7683 -4.3474 -0.1663 14 6 9.4825 -3.1219 -0.5328 15 6 9.3718 -5.2930 0.7761 16 6 10.2934 -6.2246 0.0320 17 1 10.4175 -6.1224 -1.0360 18 6 10.9789 -7.2068 0.7148 19 7 10.8282 -7.3311 2.0153 20 14 12.1218 -8.3613 -0.2074 21 1 13.4881 -7.7805 -0.2439 22 1 12.1609 -9.6754 0.4831 23 1 11.6252 -8.5457 -1.5947 24 6 5.5791 -4.7706 1.3080 25 6 4.0515 -4.6632 1.2384 26 8 3.6794 -3.2847 1.1666 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8900 30 1 1.6959 -2.0072 -0.0005 31 1 4.0088 -0.6539 0.8904 32 1 4.0095 -0.6529 -0.8896 33 1 6.0603 -2.2271 -0.9435 34 1 6.0534 -1.9889 0.8227 35 1 9.2127 -2.3236 0.1586 36 1 10.5569 -3.2986 -0.4824 37 1 9.2092 -2.8318 -1.5473 38 1 9.9392 -4.7444 1.5279 39 1 8.5869 -5.8711 1.2636 40 1 11.3102 -8.0224 2.4956 41 1 5.8781 -5.8151 1.2204 42 1 5.9333 -4.3657 2.2560 43 1 3.6139 -5.1126 2.1297 44 1 3.6899 -5.1844 0.3520 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344519115.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:03 Heat of formation + Delta-G solvation = -179.368668 kcal Electronic energy + Delta-G solvation = -28161.555345 eV Core-core repulsion = 24046.934459 eV Total energy + Delta-G solvation = -4114.620886 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.139 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.90838 -40.08730 -38.42870 -37.24938 -36.92505 -36.21286 -35.64709 -34.52815 -33.03636 -30.76085 -29.69614 -28.73043 -26.87452 -26.34482 -24.32072 -23.98065 -22.26250 -21.50044 -20.01406 -19.15089 -18.44484 -18.37776 -17.90963 -17.79635 -17.41085 -17.10409 -16.55732 -16.29063 -16.08006 -15.92098 -15.50830 -15.32970 -15.07976 -14.88726 -14.31749 -14.11362 -14.09118 -13.93938 -13.71949 -13.38615 -13.34480 -13.31311 -13.07556 -13.05110 -12.96548 -12.86727 -12.68084 -12.50573 -12.42936 -12.32421 -12.01897 -11.78880 -11.57839 -11.32520 -10.98432 -10.61829 -10.12346 -9.99428 -9.76553 -8.22675 -6.34659 -0.46589 1.37793 1.39703 1.50233 1.67163 1.88180 2.25617 2.37396 2.49304 2.58618 3.08167 3.26173 3.63935 3.73733 3.76878 3.98250 4.02808 4.08167 4.17403 4.23701 4.36123 4.52165 4.54007 4.61066 4.65413 4.68653 4.71525 4.77879 4.81460 4.94098 5.00657 5.03179 5.12161 5.14707 5.34056 5.41409 5.48583 5.67521 5.90045 6.04303 6.07759 6.59009 6.73192 7.27499 7.34353 8.84761 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.028668 B = 0.002748 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.447599 B =10185.790851 C =10515.199228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.503 3.497 3 O -0.604 6.604 4 N -0.714 5.714 5 C 0.130 3.870 6 C 0.076 3.924 7 H 0.079 0.921 8 C 0.086 3.914 9 N -1.006 6.006 10 S 2.793 3.207 11 O -1.001 7.001 12 O -1.002 7.002 13 N -1.005 6.005 14 C 0.088 3.912 15 C 0.273 3.727 16 C -0.550 4.550 17 H 0.050 0.950 18 C 0.014 3.986 19 N -0.922 5.922 20 Si 0.955 3.045 21 H -0.266 1.266 22 H -0.277 1.277 23 H -0.275 1.275 24 C 0.075 3.925 25 C 0.059 3.941 26 O -0.374 6.374 27 H 0.103 0.897 28 H 0.100 0.900 29 H 0.102 0.898 30 H 0.417 0.583 31 H 0.071 0.929 32 H 0.088 0.912 33 H 0.105 0.895 34 H 0.092 0.908 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.075 0.925 38 H 0.026 0.974 39 H 0.019 0.981 40 H 0.268 0.732 41 H 0.088 0.912 42 H 0.084 0.916 43 H 0.135 0.865 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.536 10.715 -1.070 22.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.292 3.708 3 O -0.486 6.486 4 N -0.367 5.367 5 C 0.005 3.995 6 C 0.016 3.984 7 H 0.097 0.903 8 C -0.040 4.040 9 N -0.847 5.847 10 S 2.803 3.197 11 O -0.985 6.985 12 O -0.986 6.986 13 N -0.846 5.846 14 C -0.057 4.057 15 C 0.149 3.851 16 C -0.589 4.589 17 H 0.068 0.932 18 C -0.186 4.186 19 N -0.562 5.562 20 Si 0.780 3.220 21 H -0.191 1.191 22 H -0.202 1.202 23 H -0.200 1.200 24 C -0.050 4.050 25 C -0.019 4.019 26 O -0.292 6.292 27 H 0.122 0.878 28 H 0.119 0.881 29 H 0.120 0.880 30 H 0.254 0.746 31 H 0.089 0.911 32 H 0.106 0.894 33 H 0.123 0.877 34 H 0.110 0.890 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.094 0.906 38 H 0.044 0.956 39 H 0.037 0.963 40 H 0.077 0.923 41 H 0.106 0.894 42 H 0.102 0.898 43 H 0.153 0.847 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -19.295 10.949 -1.584 22.241 hybrid contribution 1.186 -1.193 -0.078 1.684 sum -18.108 9.756 -1.662 20.636 Atomic orbital electron populations 1.21861 0.88134 1.06300 1.05902 1.21600 0.92349 0.82635 0.74188 1.90713 1.72139 1.33245 1.52473 1.45964 1.06756 1.09536 1.74415 1.21252 0.81189 0.93669 1.03373 1.22580 0.92679 0.93368 0.89741 0.90350 1.22182 0.95351 0.81768 1.04658 1.58213 1.56972 1.23148 1.46388 1.01430 0.72634 0.72426 0.73213 1.93561 1.86067 1.31871 1.86995 1.93490 1.87219 1.74494 1.43419 1.57587 1.34465 1.31367 1.61187 1.21567 0.98763 0.84795 1.00595 1.18606 0.92796 0.86207 0.87475 1.21804 1.26452 1.16045 0.94642 0.93193 1.25720 0.98387 0.98724 0.95788 1.69991 1.43409 1.34707 1.08071 0.85601 0.79313 0.78471 0.78615 1.19136 1.20204 1.19991 1.22314 0.96326 0.96674 0.89674 1.23029 0.92010 0.82365 1.04496 1.87942 1.75106 1.23492 1.42685 0.87807 0.88116 0.87983 0.74551 0.91064 0.89373 0.87661 0.88967 0.91045 0.91150 0.90588 0.95597 0.96294 0.92293 0.89384 0.89751 0.84694 0.91981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.32 10.39 71.23 0.74 -0.58 16 2 C 0.50 8.89 7.94 87.65 0.70 9.59 16 3 O -0.60 -16.90 17.10 -3.04 -0.05 -16.95 16 4 N -0.71 -10.42 5.45 -463.05 -2.52 -12.94 16 5 C 0.13 2.23 5.37 86.38 0.46 2.70 16 6 C 0.08 1.37 2.86 30.69 0.09 1.46 16 7 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 8 C 0.09 1.88 6.00 86.35 0.52 2.40 16 9 N -1.01 -28.35 3.40 -511.64 -1.74 -30.08 16 10 S 2.79 106.99 6.12 -56.49 -0.35 106.64 16 11 O -1.00 -46.71 15.73 -128.00 -2.01 -48.72 16 12 O -1.00 -39.08 15.36 -128.00 -1.97 -41.05 16 13 N -1.00 -40.96 3.23 -543.22 -1.75 -42.72 16 14 C 0.09 2.90 10.68 127.77 1.36 4.27 16 15 C 0.27 13.64 5.08 85.63 0.43 14.08 16 16 C -0.55 -30.95 9.38 25.60 0.24 -30.71 16 17 H 0.05 2.83 7.81 -2.91 -0.02 2.81 16 18 C 0.01 0.76 5.46 84.65 0.46 1.22 16 19 N -0.92 -53.32 13.29 21.44 0.28 -53.03 16 20 Si 0.96 44.25 29.54 68.60 2.03 46.27 16 21 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 22 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 23 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 24 C 0.08 1.90 6.71 86.35 0.58 2.48 16 25 C 0.06 1.07 6.98 72.08 0.50 1.57 16 26 O -0.37 -6.86 10.13 -148.98 -1.51 -8.37 16 27 H 0.10 0.26 7.91 -2.38 -0.02 0.24 16 28 H 0.10 0.74 8.14 -2.38 -0.02 0.72 16 29 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.42 3.99 8.19 -92.71 -0.76 3.23 16 31 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.09 1.51 8.14 -2.39 -0.02 1.50 16 33 H 0.11 2.26 6.94 -2.39 -0.02 2.24 16 34 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.07 2.42 8.07 -2.39 -0.02 2.40 16 37 H 0.08 2.33 7.02 -2.39 -0.02 2.31 16 38 H 0.03 1.33 8.11 -2.39 -0.02 1.31 16 39 H 0.02 1.01 7.61 -2.39 -0.02 0.99 16 40 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 41 H 0.09 2.58 6.95 -2.39 -0.02 2.57 16 42 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 43 H 0.14 1.75 8.14 -2.39 -0.02 1.73 16 44 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -78.12 375.86 -3.25 -81.37 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: 0.25 Total: 11.11 kcal Atomic # 6 Polarization: 2.39 SS G_CDS: 6.09 Total: 8.48 kcal Atomic # 7 Polarization: -133.04 SS G_CDS: -5.73 Total: -138.77 kcal Atomic # 8 Polarization: -109.55 SS G_CDS: -5.54 Total: -115.09 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.27 kcal Atomic # 16 Polarization: 106.99 SS G_CDS: -0.35 Total: 106.64 kcal Total: -78.12 -3.25 -81.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344519115.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.999 kcal (2) G-P(sol) polarization free energy of solvation -78.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds