Wall clock time and date at job start Tue Mar 31 2020 19:32:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34225 * 116.99887 * 2 1 4 4 O 1.20824 * 120.00102 * 359.97438 * 3 2 1 5 5 C 1.50709 * 119.99648 * 179.97438 * 3 2 1 6 6 N 1.46498 * 109.46847 * 185.35923 * 5 3 2 7 7 C 1.36939 * 119.99936 * 95.14241 * 6 5 3 8 8 H 1.07996 * 119.99560 * 168.23965 * 7 6 5 9 9 C 1.38806 * 119.99634 * 348.24376 * 7 6 5 10 10 N 1.31621 * 120.00547 * 334.87244 * 9 7 6 11 11 Si 1.86803 * 119.99732 * 154.87668 * 9 7 6 12 12 H 1.48510 * 109.46946 * 94.98663 * 11 9 7 13 13 H 1.48493 * 109.47259 * 214.98301 * 11 9 7 14 14 H 1.48496 * 109.47185 * 334.98807 * 11 9 7 15 15 C 1.46505 * 119.99976 * 275.14101 * 6 5 3 16 16 C 1.50702 * 109.47144 * 265.92110 * 15 6 5 17 17 O 1.21238 * 119.99925 * 5.22972 * 16 15 6 18 18 N 1.34774 * 120.00021 * 185.23705 * 16 15 6 19 19 C 1.34781 * 119.99947 * 180.02562 * 18 16 15 20 20 O 1.21539 * 119.99648 * 359.97438 * 19 18 16 21 21 N 1.34773 * 119.99886 * 179.97438 * 19 18 16 22 22 C 1.39937 * 120.00084 * 184.95552 * 21 19 18 23 23 C 1.38874 * 120.06619 * 35.49230 * 22 21 19 24 24 C 1.38112 * 119.92710 * 179.97438 * 23 22 21 25 25 C 1.38282 * 120.06892 * 359.97438 * 24 23 22 26 26 C 1.38278 * 120.14199 * 0.02562 * 25 24 23 27 27 C 1.38117 * 120.07257 * 359.97438 * 26 25 24 28 28 H 1.09001 * 109.46902 * 59.99793 * 1 2 3 29 29 H 1.09000 * 109.46786 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46929 * 299.99935 * 1 2 3 31 31 H 1.09003 * 109.46872 * 65.36072 * 5 3 2 32 32 H 1.08996 * 109.47065 * 305.36329 * 5 3 2 33 33 H 0.97000 * 120.00368 * 180.02562 * 10 9 7 34 34 H 1.09006 * 109.46756 * 145.92161 * 15 6 5 35 35 H 1.08992 * 109.47359 * 25.92303 * 15 6 5 36 36 H 0.96999 * 120.00173 * 359.97438 * 18 16 15 37 37 H 0.96998 * 120.00014 * 4.95770 * 21 19 18 38 38 H 1.07993 * 120.03261 * 359.69690 * 23 22 21 39 39 H 1.07998 * 119.96474 * 179.97438 * 24 23 22 40 40 H 1.08006 * 119.93032 * 179.97438 * 25 24 23 41 41 H 1.08005 * 119.96468 * 180.02562 * 26 25 24 42 42 H 1.08000 * 120.03767 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 7 3.9821 2.6736 0.1295 7 6 4.2835 3.1875 1.3625 8 1 4.7680 4.1494 1.4428 9 6 3.9665 2.4720 2.5089 10 7 2.9853 1.5951 2.4872 11 14 4.9326 2.7538 4.0827 12 1 4.2200 3.7433 4.9305 13 1 5.0616 1.4717 4.8206 14 1 6.2839 3.2707 3.7482 15 6 4.0752 3.5228 -1.0608 16 6 5.4895 3.5052 -1.5810 17 8 6.3135 2.7759 -1.0721 18 7 5.8383 4.3003 -2.6117 19 6 7.1030 4.2842 -3.0773 20 8 7.9290 3.5530 -2.5672 21 7 7.4517 5.0790 -4.1084 22 6 8.7348 4.9879 -4.6593 23 6 9.3714 3.7563 -4.7404 24 6 10.6376 3.6697 -5.2851 25 6 11.2712 4.8075 -5.7499 26 6 10.6400 6.0353 -5.6706 27 6 9.3738 6.1287 -5.1270 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 3.9520 0.8657 -0.9333 32 1 3.9600 0.7000 0.8389 33 1 2.7635 1.0953 3.2884 34 1 3.7962 4.5440 -0.8012 35 1 3.4006 3.1461 -1.8295 36 1 5.1789 4.8837 -3.0190 37 1 6.8132 5.7141 -4.4687 38 1 8.8786 2.8680 -4.3738 39 1 11.1334 2.7123 -5.3480 40 1 12.2616 4.7372 -6.1751 41 1 11.1374 6.9221 -6.0349 42 1 8.8815 7.0879 -5.0649 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348525263.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:05 Heat of formation + Delta-G solvation = -73.131352 kcal Electronic energy + Delta-G solvation = -28456.977498 eV Core-core repulsion = 24211.519456 eV Total energy + Delta-G solvation = -4245.458042 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.14303 -39.45112 -39.04248 -37.77504 -35.83271 -34.81921 -34.59439 -34.09287 -31.51992 -31.04370 -29.65934 -28.65728 -27.11034 -26.01243 -23.95854 -22.92676 -22.33948 -21.10785 -20.24142 -19.82411 -18.79973 -17.82827 -17.00530 -16.68124 -16.30700 -15.96911 -15.83251 -15.58715 -15.21710 -14.97282 -14.74292 -14.56180 -14.16154 -13.98497 -13.67917 -13.49127 -13.30929 -13.13040 -12.78598 -12.43186 -12.28875 -11.83496 -11.51345 -11.41532 -11.20548 -11.11324 -10.84698 -10.65189 -10.53643 -10.41515 -10.20150 -10.02154 -9.76221 -9.73023 -9.51066 -9.15933 -9.03779 -8.55255 -8.27272 -7.24417 -6.01633 -3.29696 1.14815 1.27354 2.38589 2.52639 3.36130 3.44620 3.48695 3.51349 3.67682 3.75762 3.85931 4.02212 4.42799 4.73492 4.80719 5.01198 5.10876 5.16837 5.25466 5.36204 5.40505 5.44369 5.74176 5.79519 5.82827 5.88028 6.01962 6.03264 6.09799 6.17758 6.22426 6.35603 6.39503 6.43888 6.59540 6.75100 6.91222 7.01785 7.49974 7.59257 7.66896 8.02902 8.40574 8.59702 8.88871 9.22611 9.57632 9.96323 11.09766 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.015820 B = 0.002688 C = 0.002443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.457767 B =10415.842293 C =11456.629877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.376 6.376 3 C 0.470 3.530 4 O -0.517 6.517 5 C 0.185 3.815 6 N -0.541 5.541 7 C -0.257 4.257 8 H 0.081 0.919 9 C 0.007 3.993 10 N -0.900 5.900 11 Si 0.908 3.092 12 H -0.288 1.288 13 H -0.287 1.287 14 H -0.276 1.276 15 C 0.138 3.862 16 C 0.475 3.525 17 O -0.445 6.445 18 N -0.693 5.693 19 C 0.689 3.311 20 O -0.515 6.515 21 N -0.687 5.687 22 C 0.167 3.833 23 C -0.119 4.119 24 C -0.100 4.100 25 C -0.140 4.140 26 C -0.103 4.103 27 C -0.148 4.148 28 H 0.046 0.954 29 H 0.082 0.918 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.122 0.878 33 H 0.260 0.740 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.405 0.595 37 H 0.407 0.593 38 H 0.135 0.865 39 H 0.125 0.875 40 H 0.121 0.879 41 H 0.124 0.876 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.488 6.247 -18.026 19.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.293 6.293 3 C 0.312 3.688 4 O -0.403 6.403 5 C 0.056 3.944 6 N -0.257 5.257 7 C -0.385 4.385 8 H 0.098 0.902 9 C -0.191 4.191 10 N -0.544 5.544 11 Si 0.737 3.263 12 H -0.215 1.215 13 H -0.212 1.212 14 H -0.202 1.202 15 C 0.005 3.995 16 C 0.258 3.742 17 O -0.309 6.309 18 N -0.361 5.361 19 C 0.390 3.610 20 O -0.385 6.385 21 N -0.338 5.338 22 C 0.072 3.928 23 C -0.139 4.139 24 C -0.119 4.119 25 C -0.159 4.159 26 C -0.121 4.121 27 C -0.169 4.169 28 H 0.064 0.936 29 H 0.100 0.900 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.140 0.860 33 H 0.070 0.930 34 H 0.106 0.894 35 H 0.099 0.901 36 H 0.239 0.761 37 H 0.242 0.758 38 H 0.153 0.847 39 H 0.143 0.857 40 H 0.139 0.861 41 H 0.142 0.858 42 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 6.373 5.220 -16.920 18.819 hybrid contribution -0.617 1.000 0.578 1.309 sum 5.756 6.220 -16.342 18.409 Atomic orbital electron populations 1.22890 0.79586 1.01524 1.01284 1.86542 1.21090 1.36267 1.85392 1.25448 0.93403 0.80224 0.69774 1.90455 1.66929 1.36548 1.46365 1.20407 0.85286 0.86881 1.01857 1.43484 1.73545 1.06507 1.02152 1.19173 1.32864 1.04657 0.81812 0.90150 1.24740 0.96998 0.99246 0.98085 1.69895 1.26080 1.29228 1.29212 0.86194 0.80386 0.77281 0.82472 1.21541 1.21239 1.20157 1.20691 0.88974 0.98377 0.91437 1.23868 0.94253 0.78638 0.77424 1.90782 1.51760 1.35468 1.52850 1.44819 1.10556 1.44598 1.36165 1.16418 0.83392 0.81277 0.79904 1.91082 1.48884 1.40635 1.57938 1.42862 1.13892 1.42090 1.34909 1.17525 0.84995 0.93838 0.96408 1.21240 0.96199 0.97087 0.99411 1.21064 0.94492 0.98802 0.97493 1.21124 1.00244 0.92807 1.01732 1.20908 0.94297 0.97790 0.99143 1.20873 0.95845 0.96660 1.03540 0.93559 0.89980 0.92738 0.92594 0.86017 0.92959 0.89426 0.90069 0.76053 0.75779 0.84731 0.85732 0.86098 0.85800 0.85755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.72 10.56 101.05 1.07 1.79 16 2 O -0.38 -8.01 10.57 -39.24 -0.41 -8.42 16 3 C 0.47 11.13 6.20 36.01 0.22 11.35 16 4 O -0.52 -13.32 16.10 -18.75 -0.30 -13.62 16 5 C 0.18 4.35 5.48 -5.19 -0.03 4.32 16 6 N -0.54 -13.00 1.55 -175.98 -0.27 -13.27 16 7 C -0.26 -6.90 9.67 -15.06 -0.15 -7.04 16 8 H 0.08 2.13 7.95 -52.49 -0.42 1.71 16 9 C 0.01 0.20 4.84 -17.43 -0.08 0.12 16 10 N -0.90 -25.18 9.52 55.49 0.53 -24.65 16 11 Si 0.91 21.99 29.62 -169.99 -5.04 16.96 16 12 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 13 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 14 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 15 C 0.14 2.56 6.07 -5.19 -0.03 2.53 16 16 C 0.47 8.81 7.81 -10.99 -0.09 8.72 16 17 O -0.44 -10.74 14.84 -18.21 -0.27 -11.01 16 18 N -0.69 -9.30 5.24 -15.78 -0.08 -9.38 16 19 C 0.69 10.47 8.23 -86.92 -0.72 9.76 16 20 O -0.52 -10.62 12.56 -18.47 -0.23 -10.85 16 21 N -0.69 -7.36 5.34 -14.23 -0.08 -7.43 16 22 C 0.17 1.96 6.24 -83.69 -0.52 1.44 16 23 C -0.12 -1.55 8.66 -39.39 -0.34 -1.89 16 24 C -0.10 -1.08 10.04 -39.61 -0.40 -1.47 16 25 C -0.14 -1.28 10.04 -39.55 -0.40 -1.68 16 26 C -0.10 -0.89 10.04 -39.61 -0.40 -1.29 16 27 C -0.15 -1.39 9.97 -39.40 -0.39 -1.79 16 28 H 0.05 0.73 8.13 -51.93 -0.42 0.31 16 29 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.05 1.00 8.13 -51.93 -0.42 0.58 16 31 H 0.06 1.16 8.11 -51.93 -0.42 0.74 16 32 H 0.12 3.16 6.17 -51.93 -0.32 2.84 16 33 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 34 H 0.09 1.49 8.07 -51.93 -0.42 1.07 16 35 H 0.08 1.31 8.04 -51.93 -0.42 0.89 16 36 H 0.41 3.27 8.72 -40.82 -0.36 2.92 16 37 H 0.41 2.60 8.84 -40.82 -0.36 2.23 16 38 H 0.13 2.03 6.55 -52.49 -0.34 1.69 16 39 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 40 H 0.12 0.82 8.06 -52.48 -0.42 0.40 16 41 H 0.12 0.76 8.06 -52.48 -0.42 0.33 16 42 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 LS Contribution 367.89 15.07 5.54 5.54 Total: -1.00 -38.44 367.89 -8.01 -46.45 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -5.15 Total: 4.82 kcal Atomic # 6 Polarization: 27.11 SS G_CDS: -2.25 Total: 24.86 kcal Atomic # 7 Polarization: -54.82 SS G_CDS: 0.10 Total: -54.73 kcal Atomic # 8 Polarization: -42.69 SS G_CDS: -1.22 Total: -43.90 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.04 Total: 16.96 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -38.44 -8.01 -46.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348525263.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.678 kcal (2) G-P(sol) polarization free energy of solvation -38.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds