Wall clock time and date at job start Tue Mar 31 2020 19:32:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34225 * 116.99887 * 2 1 4 4 O 1.20824 * 120.00102 * 359.97438 * 3 2 1 5 5 C 1.50709 * 119.99648 * 179.97438 * 3 2 1 6 6 N 1.46498 * 109.46847 * 185.35923 * 5 3 2 7 7 C 1.36939 * 119.99936 * 95.14241 * 6 5 3 8 8 H 1.07996 * 119.99560 * 168.23965 * 7 6 5 9 9 C 1.38806 * 119.99634 * 348.24376 * 7 6 5 10 10 N 1.31621 * 120.00547 * 334.87244 * 9 7 6 11 11 Si 1.86803 * 119.99732 * 154.87668 * 9 7 6 12 12 H 1.48510 * 109.46946 * 94.98663 * 11 9 7 13 13 H 1.48493 * 109.47259 * 214.98301 * 11 9 7 14 14 H 1.48496 * 109.47185 * 334.98807 * 11 9 7 15 15 C 1.46505 * 119.99976 * 275.14101 * 6 5 3 16 16 C 1.50702 * 109.47144 * 265.92110 * 15 6 5 17 17 O 1.21238 * 119.99925 * 5.22972 * 16 15 6 18 18 N 1.34774 * 120.00021 * 185.23705 * 16 15 6 19 19 C 1.34781 * 119.99947 * 180.02562 * 18 16 15 20 20 O 1.21539 * 119.99648 * 359.97438 * 19 18 16 21 21 N 1.34773 * 119.99886 * 179.97438 * 19 18 16 22 22 C 1.39937 * 120.00084 * 184.95552 * 21 19 18 23 23 C 1.38874 * 120.06619 * 35.49230 * 22 21 19 24 24 C 1.38112 * 119.92710 * 179.97438 * 23 22 21 25 25 C 1.38282 * 120.06892 * 359.97438 * 24 23 22 26 26 C 1.38278 * 120.14199 * 0.02562 * 25 24 23 27 27 C 1.38117 * 120.07257 * 359.97438 * 26 25 24 28 28 H 1.09001 * 109.46902 * 59.99793 * 1 2 3 29 29 H 1.09000 * 109.46786 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46929 * 299.99935 * 1 2 3 31 31 H 1.09003 * 109.46872 * 65.36072 * 5 3 2 32 32 H 1.08996 * 109.47065 * 305.36329 * 5 3 2 33 33 H 0.97000 * 120.00368 * 180.02562 * 10 9 7 34 34 H 1.09006 * 109.46756 * 145.92161 * 15 6 5 35 35 H 1.08992 * 109.47359 * 25.92303 * 15 6 5 36 36 H 0.96999 * 120.00173 * 359.97438 * 18 16 15 37 37 H 0.96998 * 120.00014 * 4.95770 * 21 19 18 38 38 H 1.07993 * 120.03261 * 359.69690 * 23 22 21 39 39 H 1.07998 * 119.96474 * 179.97438 * 24 23 22 40 40 H 1.08006 * 119.93032 * 179.97438 * 25 24 23 41 41 H 1.08005 * 119.96468 * 180.02562 * 26 25 24 42 42 H 1.08000 * 120.03767 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 7 3.9821 2.6736 0.1295 7 6 4.2835 3.1875 1.3625 8 1 4.7680 4.1494 1.4428 9 6 3.9665 2.4720 2.5089 10 7 2.9853 1.5951 2.4872 11 14 4.9326 2.7538 4.0827 12 1 4.2200 3.7433 4.9305 13 1 5.0616 1.4717 4.8206 14 1 6.2839 3.2707 3.7482 15 6 4.0752 3.5228 -1.0608 16 6 5.4895 3.5052 -1.5810 17 8 6.3135 2.7759 -1.0721 18 7 5.8383 4.3003 -2.6117 19 6 7.1030 4.2842 -3.0773 20 8 7.9290 3.5530 -2.5672 21 7 7.4517 5.0790 -4.1084 22 6 8.7348 4.9879 -4.6593 23 6 9.3714 3.7563 -4.7404 24 6 10.6376 3.6697 -5.2851 25 6 11.2712 4.8075 -5.7499 26 6 10.6400 6.0353 -5.6706 27 6 9.3738 6.1287 -5.1270 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 3.9520 0.8657 -0.9333 32 1 3.9600 0.7000 0.8389 33 1 2.7635 1.0953 3.2884 34 1 3.7962 4.5440 -0.8012 35 1 3.4006 3.1461 -1.8295 36 1 5.1789 4.8837 -3.0190 37 1 6.8132 5.7141 -4.4687 38 1 8.8786 2.8680 -4.3738 39 1 11.1334 2.7123 -5.3480 40 1 12.2616 4.7372 -6.1751 41 1 11.1374 6.9221 -6.0349 42 1 8.8815 7.0879 -5.0649 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348525263.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:04 Heat of formation + Delta-G solvation = -99.236401 kcal Electronic energy + Delta-G solvation = -28458.109497 eV Core-core repulsion = 24211.519456 eV Total energy + Delta-G solvation = -4246.590042 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.36543 -40.90228 -40.43477 -39.03902 -37.55737 -36.43551 -35.97146 -35.38528 -33.44492 -31.81774 -30.73108 -30.18616 -28.72422 -27.68495 -25.32286 -23.99338 -23.52285 -22.28178 -21.69428 -21.46492 -19.96964 -18.98542 -18.75108 -18.20479 -17.68711 -17.36062 -17.17648 -16.95919 -16.79370 -16.56922 -16.15684 -15.85316 -15.48932 -15.30637 -14.90532 -14.84920 -14.73036 -14.25706 -14.03210 -13.95524 -13.76990 -13.39815 -12.91079 -12.72894 -12.64664 -12.63965 -12.38570 -12.20346 -12.12649 -12.03435 -11.93953 -11.40795 -11.38392 -11.28595 -11.15205 -10.78519 -10.48303 -9.84836 -9.14280 -9.12879 -8.05085 -5.32473 0.30852 0.48483 1.18256 1.25378 1.42811 1.47316 1.57568 1.88482 2.22898 2.27221 2.49664 2.87465 2.92373 3.22250 3.42785 3.95008 4.02662 4.09129 4.32581 4.35979 4.44958 4.45895 4.51423 4.52263 4.56344 4.57206 4.63817 4.72857 4.91890 5.03559 5.09042 5.15771 5.34111 5.37753 5.54061 5.57189 5.63649 5.68873 5.87937 6.09530 6.11036 6.56786 6.90751 7.23379 7.28967 7.39809 7.66219 8.00620 9.04716 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.015820 B = 0.002688 C = 0.002443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.457767 B =10415.842293 C =11456.629877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.383 6.383 3 C 0.476 3.524 4 O -0.542 6.542 5 C 0.185 3.815 6 N -0.560 5.560 7 C -0.260 4.260 8 H 0.077 0.923 9 C -0.040 4.040 10 N -0.921 5.921 11 Si 0.961 3.039 12 H -0.285 1.285 13 H -0.289 1.289 14 H -0.283 1.283 15 C 0.138 3.862 16 C 0.488 3.512 17 O -0.506 6.506 18 N -0.670 5.670 19 C 0.688 3.312 20 O -0.572 6.572 21 N -0.661 5.661 22 C 0.142 3.858 23 C -0.149 4.149 24 C -0.114 4.114 25 C -0.137 4.137 26 C -0.101 4.101 27 C -0.141 4.141 28 H 0.059 0.941 29 H 0.124 0.876 30 H 0.037 0.963 31 H 0.079 0.921 32 H 0.092 0.908 33 H 0.254 0.746 34 H 0.108 0.892 35 H 0.111 0.889 36 H 0.433 0.567 37 H 0.430 0.570 38 H 0.101 0.899 39 H 0.132 0.868 40 H 0.148 0.852 41 H 0.159 0.841 42 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.698 8.370 -20.251 22.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.299 6.299 3 C 0.319 3.681 4 O -0.431 6.431 5 C 0.056 3.944 6 N -0.277 5.277 7 C -0.389 4.389 8 H 0.095 0.905 9 C -0.235 4.235 10 N -0.567 5.567 11 Si 0.790 3.210 12 H -0.212 1.212 13 H -0.215 1.215 14 H -0.209 1.209 15 C 0.007 3.993 16 C 0.273 3.727 17 O -0.375 6.375 18 N -0.339 5.339 19 C 0.389 3.611 20 O -0.446 6.446 21 N -0.313 5.313 22 C 0.047 3.953 23 C -0.170 4.170 24 C -0.132 4.132 25 C -0.156 4.156 26 C -0.119 4.119 27 C -0.162 4.162 28 H 0.078 0.922 29 H 0.142 0.858 30 H 0.056 0.944 31 H 0.097 0.903 32 H 0.110 0.890 33 H 0.063 0.937 34 H 0.126 0.874 35 H 0.129 0.871 36 H 0.273 0.727 37 H 0.270 0.730 38 H 0.119 0.881 39 H 0.150 0.850 40 H 0.166 0.834 41 H 0.176 0.824 42 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 6.542 7.426 -19.249 21.644 hybrid contribution -0.633 0.381 1.081 1.310 sum 5.909 7.808 -18.167 20.638 Atomic orbital electron populations 1.23222 0.76979 1.04317 1.01121 1.86495 1.23606 1.34957 1.84859 1.25291 0.93396 0.80406 0.69048 1.90425 1.67496 1.37417 1.47722 1.20278 0.85593 0.86867 1.01682 1.43562 1.74162 1.07130 1.02855 1.19375 1.31886 1.04409 0.83269 0.90535 1.25324 0.97933 0.99897 1.00388 1.70003 1.27163 1.30262 1.29240 0.85370 0.78830 0.76845 0.79993 1.21154 1.21501 1.20899 1.20950 0.89153 0.98763 0.90435 1.23572 0.93600 0.77999 0.77562 1.90776 1.53221 1.38262 1.55229 1.44225 1.10963 1.43920 1.34831 1.16539 0.83027 0.81150 0.80373 1.91062 1.50478 1.43083 1.59955 1.42504 1.14359 1.41230 1.33231 1.17758 0.85444 0.94338 0.97720 1.21177 0.97588 0.96838 1.01366 1.21258 0.93945 1.00255 0.97771 1.21495 1.01212 0.92340 1.00543 1.21387 0.93924 0.98754 0.97822 1.21218 0.96067 0.96811 1.02063 0.92186 0.85776 0.94434 0.90311 0.88962 0.93660 0.87428 0.87140 0.72707 0.73046 0.88123 0.85000 0.83386 0.82371 0.82762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.22 10.56 113.37 1.20 2.42 16 2 O -0.38 -16.07 10.57 -51.37 -0.54 -16.61 16 3 C 0.48 22.49 6.20 71.24 0.44 22.93 16 4 O -0.54 -27.76 16.10 21.97 0.35 -27.41 16 5 C 0.18 8.81 5.48 85.64 0.47 9.28 16 6 N -0.56 -27.04 1.55 -710.67 -1.10 -28.14 16 7 C -0.26 -14.15 9.67 84.03 0.81 -13.33 16 8 H 0.08 4.10 7.95 -2.91 -0.02 4.08 16 9 C -0.04 -2.22 4.84 84.86 0.41 -1.81 16 10 N -0.92 -52.59 9.52 21.65 0.21 -52.39 16 11 Si 0.96 46.31 29.62 68.60 2.03 48.34 16 12 H -0.28 -13.40 7.11 99.48 0.71 -12.70 16 13 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 14 H -0.28 -13.81 7.11 99.48 0.71 -13.10 16 15 C 0.14 4.96 6.07 85.63 0.52 5.48 16 16 C 0.49 17.96 7.81 87.66 0.68 18.65 16 17 O -0.51 -25.17 14.84 19.86 0.29 -24.88 16 18 N -0.67 -17.16 5.24 -440.52 -2.31 -19.47 16 19 C 0.69 20.78 8.23 179.05 1.47 22.26 16 20 O -0.57 -24.54 12.56 18.92 0.24 -24.30 16 21 N -0.66 -13.24 5.34 -317.23 -1.69 -14.93 16 22 C 0.14 3.18 6.24 38.15 0.24 3.42 16 23 C -0.15 -4.02 8.66 22.39 0.19 -3.82 16 24 C -0.11 -2.43 10.04 22.25 0.22 -2.21 16 25 C -0.14 -2.17 10.04 22.29 0.22 -1.95 16 26 C -0.10 -1.38 10.04 22.25 0.22 -1.15 16 27 C -0.14 -2.22 9.97 22.39 0.22 -1.99 16 28 H 0.06 1.79 8.13 -2.39 -0.02 1.77 16 29 H 0.12 2.96 8.14 -2.39 -0.02 2.94 16 30 H 0.04 1.34 8.13 -2.39 -0.02 1.32 16 31 H 0.08 3.30 8.11 -2.39 -0.02 3.28 16 32 H 0.09 4.96 6.17 -2.39 -0.01 4.95 16 33 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 34 H 0.11 3.44 8.07 -2.38 -0.02 3.42 16 35 H 0.11 3.32 8.04 -2.39 -0.02 3.30 16 36 H 0.43 5.82 8.72 -92.71 -0.81 5.02 16 37 H 0.43 4.27 8.84 -92.71 -0.82 3.45 16 38 H 0.10 3.35 6.55 -2.91 -0.02 3.33 16 39 H 0.13 2.43 8.06 -2.91 -0.02 2.41 16 40 H 0.15 1.50 8.06 -2.91 -0.02 1.47 16 41 H 0.16 1.10 8.06 -2.91 -0.02 1.08 16 42 H 0.15 1.44 8.06 -2.91 -0.02 1.42 16 Total: -1.00 -88.13 367.89 4.26 -83.86 By element: Atomic # 1 Polarization: 18.30 SS G_CDS: -0.54 Total: 17.76 kcal Atomic # 6 Polarization: 50.83 SS G_CDS: 7.33 Total: 58.17 kcal Atomic # 7 Polarization: -110.03 SS G_CDS: -4.90 Total: -114.93 kcal Atomic # 8 Polarization: -93.54 SS G_CDS: 0.34 Total: -93.20 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 2.03 Total: 48.34 kcal Total: -88.13 4.26 -83.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348525263.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.374 kcal (2) G-P(sol) polarization free energy of solvation -88.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds