Wall clock time and date at job start Tue Mar 31 2020 18:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45199 * 109.46834 * 2 1 4 4 C 1.34705 * 116.99855 * 179.97438 * 3 2 1 5 5 O 1.21471 * 120.00371 * 359.97438 * 4 3 2 6 6 C 1.47741 * 119.99873 * 180.02562 * 4 3 2 7 7 C 1.39663 * 120.11897 * 359.71704 * 6 4 3 8 8 C 1.37969 * 119.99257 * 179.74449 * 7 6 4 9 9 C 1.38267 * 120.22418 * 0.53894 * 8 7 6 10 10 C 1.38942 * 120.23495 * 359.74252 * 9 8 7 11 11 N 1.39977 * 119.99682 * 179.97438 * 10 9 8 12 12 C 1.34777 * 120.00444 * 213.30501 * 11 10 9 13 13 O 1.21592 * 119.99564 * 5.31567 * 12 11 10 14 14 N 1.34779 * 120.00348 * 185.31939 * 12 11 10 15 15 C 1.46500 * 119.99937 * 179.97438 * 14 12 11 16 16 C 1.50697 * 109.47131 * 179.97438 * 15 14 12 17 17 O 1.21300 * 120.00029 * 0.02562 * 16 15 14 18 18 N 1.34778 * 120.00370 * 180.02562 * 16 15 14 19 19 C 1.37098 * 120.00164 * 180.02562 * 18 16 15 20 20 H 1.07997 * 119.99912 * 359.97438 * 19 18 16 21 21 C 1.38949 * 119.99809 * 179.97438 * 19 18 16 22 22 N 1.31410 * 120.00151 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99840 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47355 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.47296 * 119.99789 * 23 21 19 26 26 H 1.48492 * 109.47214 * 239.99956 * 23 21 19 27 27 C 1.38621 * 120.01013 * 359.97438 * 10 9 8 28 28 H 1.09011 * 109.47007 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47562 * 299.99910 * 1 2 3 30 30 H 1.09002 * 109.47153 * 60.00158 * 1 2 3 31 31 H 1.09002 * 109.47153 * 119.99841 * 2 1 3 32 32 H 1.09001 * 109.47049 * 239.99992 * 2 1 3 33 33 H 1.07999 * 120.00642 * 0.02562 * 7 6 4 34 34 H 1.07997 * 119.88984 * 180.27301 * 8 7 6 35 35 H 1.07998 * 119.88159 * 179.75941 * 9 8 7 36 36 H 0.97000 * 119.99842 * 33.30712 * 11 10 9 37 37 H 0.97000 * 119.99663 * 0.02562 * 14 12 11 38 38 H 1.08999 * 109.47432 * 299.99781 * 15 14 12 39 39 H 1.08998 * 109.46829 * 60.00011 * 15 14 12 40 40 H 0.96995 * 119.99294 * 359.97438 * 18 16 15 41 41 H 0.96997 * 120.00131 * 180.02562 * 22 21 19 42 42 H 1.08003 * 120.11576 * 180.02562 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3494 1.5455 0.0005 5 8 4.0894 0.5823 0.0015 6 6 3.9140 2.9108 0.0011 7 6 3.0655 4.0201 -0.0048 8 6 3.5956 5.2939 0.0011 9 6 4.9660 5.4775 0.0017 10 6 5.8188 4.3806 0.0017 11 7 7.2054 4.5722 0.0017 12 6 8.0066 3.6982 -0.6391 13 8 7.5212 2.7987 -1.2976 14 7 9.3458 3.8212 -0.5500 15 6 10.2166 2.8708 -1.2462 16 6 11.6577 3.2272 -0.9872 17 8 11.9306 4.1810 -0.2892 18 7 12.6435 2.4862 -1.5310 19 6 13.9546 2.8101 -1.2948 20 1 14.1975 3.6593 -0.6734 21 6 14.9707 2.0458 -1.8551 22 7 14.6751 1.0122 -2.6108 23 14 16.7571 2.4867 -1.5328 24 1 16.8212 3.6833 -0.6556 25 1 17.4356 1.3471 -0.8648 26 1 17.4348 2.7800 -2.8211 27 6 5.2968 3.0964 0.0017 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.9945 3.8809 -0.0094 34 1 2.9379 6.1505 0.0010 35 1 5.3749 6.4770 0.0024 36 1 7.5897 5.3341 0.4631 37 1 9.7330 4.5386 -0.0243 38 1 10.0199 1.8629 -0.8809 39 1 10.0188 2.9142 -2.3172 40 1 12.4252 1.7233 -2.0887 41 1 15.3845 0.4784 -3.0016 42 1 5.9581 2.2426 0.0021 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348859969.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:19 Heat of formation + Delta-G solvation = -122.486487 kcal Electronic energy + Delta-G solvation = -27098.887828 eV Core-core repulsion = 22851.289587 eV Total energy + Delta-G solvation = -4247.598241 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.98177 -40.35634 -38.87274 -38.10857 -36.74881 -34.94911 -34.51600 -33.76286 -32.23105 -31.41464 -31.30341 -29.97195 -27.43168 -25.21249 -24.60124 -23.09885 -22.92562 -21.20471 -20.79859 -19.67432 -18.60952 -18.52483 -17.97455 -17.31458 -16.77859 -16.45881 -16.03784 -15.78622 -15.65828 -14.96534 -14.89827 -14.59214 -14.44084 -14.19526 -14.07220 -13.86809 -13.69976 -13.48739 -13.11918 -13.01015 -12.26455 -12.24590 -12.17891 -12.04612 -12.02657 -11.74426 -11.65419 -11.16412 -10.81152 -10.74733 -10.55564 -10.42622 -10.35009 -10.14034 -9.67229 -9.28571 -8.96258 -8.67159 -8.29836 -8.12697 -6.53636 -3.95893 0.46116 1.10181 2.30059 2.32689 2.58425 3.08435 3.13434 3.21412 3.27910 3.62187 3.71408 4.03561 4.21247 4.36548 4.59375 4.59620 4.64020 4.83503 4.83741 4.91410 4.93987 5.11421 5.14932 5.17910 5.36666 5.41539 5.57358 5.60878 5.82722 5.93597 5.94710 6.02417 6.04014 6.09238 6.16250 6.24187 6.58489 6.72219 6.85504 7.44150 7.56867 7.89627 7.97527 8.41674 8.54177 9.02136 9.36455 9.83835 10.63192 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.020188 B = 0.001904 C = 0.001758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.628623 B =14703.477497 C =15926.547209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.061 3.939 3 O -0.355 6.355 4 C 0.509 3.491 5 O -0.497 6.497 6 C -0.108 4.108 7 C -0.086 4.086 8 C -0.112 4.112 9 C -0.116 4.116 10 C 0.166 3.834 11 N -0.688 5.688 12 C 0.702 3.298 13 O -0.575 6.575 14 N -0.715 5.715 15 C 0.126 3.874 16 C 0.428 3.572 17 O -0.598 6.598 18 N -0.547 5.547 19 C -0.306 4.306 20 H 0.106 0.894 21 C 0.026 3.974 22 N -0.893 5.893 23 Si 0.933 3.067 24 H -0.267 1.267 25 H -0.280 1.280 26 H -0.280 1.280 27 C -0.058 4.058 28 H 0.080 0.920 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.137 0.863 34 H 0.135 0.865 35 H 0.133 0.867 36 H 0.411 0.589 37 H 0.409 0.591 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.396 0.604 41 H 0.274 0.726 42 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.884 4.928 5.322 27.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.012 4.012 3 O -0.273 6.273 4 C 0.353 3.647 5 O -0.385 6.385 6 C -0.109 4.109 7 C -0.105 4.105 8 C -0.130 4.130 9 C -0.137 4.137 10 C 0.071 3.929 11 N -0.336 5.336 12 C 0.402 3.598 13 O -0.452 6.452 14 N -0.372 5.372 15 C -0.002 4.002 16 C 0.213 3.787 17 O -0.485 6.485 18 N -0.182 5.182 19 C -0.435 4.435 20 H 0.124 0.876 21 C -0.177 4.177 22 N -0.533 5.533 23 Si 0.760 3.240 24 H -0.191 1.191 25 H -0.206 1.206 26 H -0.206 1.206 27 C -0.079 4.079 28 H 0.098 0.902 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.155 0.845 34 H 0.153 0.847 35 H 0.151 0.849 36 H 0.247 0.753 37 H 0.247 0.753 38 H 0.104 0.896 39 H 0.103 0.897 40 H 0.230 0.770 41 H 0.084 0.916 42 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -26.656 4.227 5.062 27.460 hybrid contribution 1.276 0.181 0.136 1.296 sum -25.380 4.408 5.198 26.279 Atomic orbital electron populations 1.21809 0.92498 1.03052 1.03521 1.23057 0.95322 0.79949 1.02896 1.86517 1.23797 1.32498 1.84465 1.21140 0.80560 0.89924 0.73029 1.90880 1.60283 1.42361 1.44964 1.18890 0.93333 0.90083 1.08630 1.21373 1.00135 0.91512 0.97494 1.20896 0.94310 0.97142 1.00694 1.21169 0.93430 0.97972 1.01096 1.17280 0.82261 0.93195 1.00207 1.42596 1.04080 1.30090 1.56850 1.15858 0.81550 0.82283 0.80143 1.90973 1.74390 1.34941 1.44867 1.44767 1.03219 1.34658 1.54593 1.20863 0.88848 0.92744 0.97712 1.19704 0.86243 0.86568 0.86171 1.90495 1.83500 1.31148 1.43393 1.41790 1.05556 1.27265 1.43592 1.19781 0.80496 1.13558 1.29663 0.87582 1.25340 1.00850 0.95478 0.96062 1.69621 1.34405 1.17204 1.32082 0.85746 0.81349 0.78648 0.78267 1.19132 1.20598 1.20598 1.21345 0.93687 0.97654 0.95169 0.90156 0.91452 0.91418 0.91082 0.91017 0.84497 0.84713 0.84883 0.75324 0.75303 0.89650 0.89705 0.76974 0.91586 0.82849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 10.29 37.16 0.38 -0.41 16 2 C 0.06 0.51 6.19 37.16 0.23 0.74 16 3 O -0.36 -3.76 9.47 -40.51 -0.38 -4.15 16 4 C 0.51 6.72 7.90 34.61 0.27 7.00 16 5 O -0.50 -8.16 16.13 -19.24 -0.31 -8.47 16 6 C -0.11 -1.31 5.87 -105.00 -0.62 -1.93 16 7 C -0.09 -0.77 9.61 -39.15 -0.38 -1.15 16 8 C -0.11 -0.84 10.02 -39.67 -0.40 -1.24 16 9 C -0.12 -0.98 9.95 -39.31 -0.39 -1.38 16 10 C 0.17 1.95 6.27 -83.74 -0.53 1.43 16 11 N -0.69 -8.08 5.35 -14.26 -0.08 -8.16 16 12 C 0.70 11.07 8.30 -86.92 -0.72 10.34 16 13 O -0.57 -11.03 14.03 5.28 0.07 -10.96 16 14 N -0.72 -11.52 5.53 -66.42 -0.37 -11.89 16 15 C 0.13 2.30 6.15 -5.20 -0.03 2.27 16 16 C 0.43 9.65 7.85 -10.99 -0.09 9.56 16 17 O -0.60 -14.99 15.24 5.54 0.08 -14.90 16 18 N -0.55 -13.46 5.29 -10.96 -0.06 -13.52 16 19 C -0.31 -8.25 9.68 -14.93 -0.14 -8.39 16 20 H 0.11 2.98 7.16 -52.49 -0.38 2.60 16 21 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 22 N -0.89 -23.80 13.05 55.50 0.72 -23.07 16 23 Si 0.93 20.43 29.55 -169.99 -5.02 15.40 16 24 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 25 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 26 H -0.28 -6.05 7.11 56.52 0.40 -5.64 16 27 C -0.06 -0.80 8.20 -38.96 -0.32 -1.12 16 28 H 0.08 0.29 8.14 -51.92 -0.42 -0.13 16 29 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.14 0.95 7.61 -52.49 -0.40 0.55 16 34 H 0.14 0.60 8.06 -52.49 -0.42 0.18 16 35 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 36 H 0.41 3.45 8.83 -40.82 -0.36 3.09 16 37 H 0.41 6.26 7.46 -40.82 -0.30 5.95 16 38 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 39 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 40 H 0.40 9.41 7.90 -40.82 -0.32 9.09 16 41 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 42 H 0.15 2.59 6.00 -52.48 -0.31 2.28 16 LS Contribution 373.13 15.07 5.62 5.62 Total: -1.00 -34.10 373.13 -7.55 -41.65 By element: Atomic # 1 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 6 Polarization: 19.13 SS G_CDS: -2.82 Total: 16.31 kcal Atomic # 7 Polarization: -56.87 SS G_CDS: 0.22 Total: -56.65 kcal Atomic # 8 Polarization: -37.94 SS G_CDS: -0.54 Total: -38.47 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.10 -7.55 -41.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348859969.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.840 kcal (2) G-P(sol) polarization free energy of solvation -34.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds