Wall clock time and date at job start Tue Mar 31 2020 18:19:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45199 * 109.46834 * 2 1 4 4 C 1.34705 * 116.99855 * 179.97438 * 3 2 1 5 5 O 1.21471 * 120.00371 * 359.97438 * 4 3 2 6 6 C 1.47741 * 119.99873 * 180.02562 * 4 3 2 7 7 C 1.39663 * 120.11897 * 359.71704 * 6 4 3 8 8 C 1.37969 * 119.99257 * 179.74449 * 7 6 4 9 9 C 1.38267 * 120.22418 * 0.53894 * 8 7 6 10 10 C 1.38942 * 120.23495 * 359.74252 * 9 8 7 11 11 N 1.39977 * 119.99682 * 179.97438 * 10 9 8 12 12 C 1.34777 * 120.00444 * 213.30501 * 11 10 9 13 13 O 1.21592 * 119.99564 * 5.31567 * 12 11 10 14 14 N 1.34779 * 120.00348 * 185.31939 * 12 11 10 15 15 C 1.46500 * 119.99937 * 179.97438 * 14 12 11 16 16 C 1.50697 * 109.47131 * 179.97438 * 15 14 12 17 17 O 1.21300 * 120.00029 * 0.02562 * 16 15 14 18 18 N 1.34778 * 120.00370 * 180.02562 * 16 15 14 19 19 C 1.37098 * 120.00164 * 180.02562 * 18 16 15 20 20 H 1.07997 * 119.99912 * 359.97438 * 19 18 16 21 21 C 1.38949 * 119.99809 * 179.97438 * 19 18 16 22 22 N 1.31410 * 120.00151 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99840 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47355 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.47296 * 119.99789 * 23 21 19 26 26 H 1.48492 * 109.47214 * 239.99956 * 23 21 19 27 27 C 1.38621 * 120.01013 * 359.97438 * 10 9 8 28 28 H 1.09011 * 109.47007 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47562 * 299.99910 * 1 2 3 30 30 H 1.09002 * 109.47153 * 60.00158 * 1 2 3 31 31 H 1.09002 * 109.47153 * 119.99841 * 2 1 3 32 32 H 1.09001 * 109.47049 * 239.99992 * 2 1 3 33 33 H 1.07999 * 120.00642 * 0.02562 * 7 6 4 34 34 H 1.07997 * 119.88984 * 180.27301 * 8 7 6 35 35 H 1.07998 * 119.88159 * 179.75941 * 9 8 7 36 36 H 0.97000 * 119.99842 * 33.30712 * 11 10 9 37 37 H 0.97000 * 119.99663 * 0.02562 * 14 12 11 38 38 H 1.08999 * 109.47432 * 299.99781 * 15 14 12 39 39 H 1.08998 * 109.46829 * 60.00011 * 15 14 12 40 40 H 0.96995 * 119.99294 * 359.97438 * 18 16 15 41 41 H 0.96997 * 120.00131 * 180.02562 * 22 21 19 42 42 H 1.08003 * 120.11576 * 180.02562 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3494 1.5455 0.0005 5 8 4.0894 0.5823 0.0015 6 6 3.9140 2.9108 0.0011 7 6 3.0655 4.0201 -0.0048 8 6 3.5956 5.2939 0.0011 9 6 4.9660 5.4775 0.0017 10 6 5.8188 4.3806 0.0017 11 7 7.2054 4.5722 0.0017 12 6 8.0066 3.6982 -0.6391 13 8 7.5212 2.7987 -1.2976 14 7 9.3458 3.8212 -0.5500 15 6 10.2166 2.8708 -1.2462 16 6 11.6577 3.2272 -0.9872 17 8 11.9306 4.1810 -0.2892 18 7 12.6435 2.4862 -1.5310 19 6 13.9546 2.8101 -1.2948 20 1 14.1975 3.6593 -0.6734 21 6 14.9707 2.0458 -1.8551 22 7 14.6751 1.0122 -2.6108 23 14 16.7571 2.4867 -1.5328 24 1 16.8212 3.6833 -0.6556 25 1 17.4356 1.3471 -0.8648 26 1 17.4348 2.7800 -2.8211 27 6 5.2968 3.0964 0.0017 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.9945 3.8809 -0.0094 34 1 2.9379 6.1505 0.0010 35 1 5.3749 6.4770 0.0024 36 1 7.5897 5.3341 0.4631 37 1 9.7330 4.5386 -0.0243 38 1 10.0199 1.8629 -0.8809 39 1 10.0188 2.9142 -2.3172 40 1 12.4252 1.7233 -2.0887 41 1 15.3845 0.4784 -3.0016 42 1 5.9581 2.2426 0.0021 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348859969.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:18 Heat of formation + Delta-G solvation = -147.304742 kcal Electronic energy + Delta-G solvation = -27099.964029 eV Core-core repulsion = 22851.289587 eV Total energy + Delta-G solvation = -4248.674442 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.00153 -41.44916 -40.31230 -39.44640 -37.71719 -36.32231 -35.93242 -35.40861 -33.39438 -32.91896 -32.03395 -30.96764 -28.94499 -26.46530 -26.00991 -23.91882 -23.74678 -22.11319 -21.93779 -21.41002 -20.16454 -19.72755 -19.43061 -18.28056 -17.65239 -17.48294 -17.40239 -17.04524 -16.89885 -16.55639 -16.16870 -16.02426 -15.72320 -15.37481 -15.25998 -15.15716 -14.67900 -14.53218 -14.01774 -13.95460 -13.61847 -13.58711 -13.56116 -12.96427 -12.92568 -12.87674 -12.77416 -12.48865 -12.45553 -12.11372 -11.77837 -11.61148 -11.59107 -11.57283 -11.34025 -10.58451 -10.33387 -10.10888 -10.07740 -9.20591 -8.52288 -6.02768 -0.38438 0.27466 1.31113 1.34436 1.41166 1.43335 1.55218 1.58507 1.86406 1.96435 2.27216 2.78203 2.93947 3.14937 3.19372 3.56740 3.89486 3.98284 4.05847 4.07945 4.17146 4.17655 4.32163 4.34322 4.40143 4.40958 4.45479 4.74903 4.89151 4.92897 5.08611 5.15955 5.16413 5.28333 5.31202 5.36738 5.37772 5.42227 5.81852 5.88517 5.90992 6.45779 6.60761 6.83779 7.01886 7.31417 7.42987 7.91752 8.64847 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.020188 B = 0.001904 C = 0.001758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.628623 B =14703.477497 C =15926.547209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.051 3.949 3 O -0.347 6.347 4 C 0.508 3.492 5 O -0.544 6.544 6 C -0.130 4.130 7 C -0.072 4.072 8 C -0.098 4.098 9 C -0.096 4.096 10 C 0.143 3.857 11 N -0.670 5.670 12 C 0.702 3.298 13 O -0.612 6.612 14 N -0.714 5.714 15 C 0.140 3.860 16 C 0.435 3.565 17 O -0.622 6.622 18 N -0.559 5.559 19 C -0.337 4.337 20 H 0.088 0.912 21 C -0.012 4.012 22 N -0.917 5.917 23 Si 0.999 3.001 24 H -0.269 1.269 25 H -0.272 1.272 26 H -0.271 1.271 27 C -0.087 4.087 28 H 0.099 0.901 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.162 0.838 34 H 0.181 0.819 35 H 0.170 0.830 36 H 0.428 0.572 37 H 0.414 0.586 38 H 0.091 0.909 39 H 0.095 0.905 40 H 0.399 0.601 41 H 0.280 0.720 42 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.893 7.314 5.634 30.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.022 4.022 3 O -0.263 6.263 4 C 0.355 3.645 5 O -0.436 6.436 6 C -0.131 4.131 7 C -0.090 4.090 8 C -0.116 4.116 9 C -0.116 4.116 10 C 0.048 3.952 11 N -0.320 5.320 12 C 0.402 3.598 13 O -0.492 6.492 14 N -0.371 5.371 15 C 0.011 3.989 16 C 0.221 3.779 17 O -0.510 6.510 18 N -0.194 5.194 19 C -0.466 4.466 20 H 0.106 0.894 21 C -0.212 4.212 22 N -0.557 5.557 23 Si 0.822 3.178 24 H -0.193 1.193 25 H -0.198 1.198 26 H -0.196 1.196 27 C -0.108 4.108 28 H 0.118 0.882 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.179 0.821 34 H 0.199 0.801 35 H 0.187 0.813 36 H 0.267 0.733 37 H 0.253 0.747 38 H 0.109 0.891 39 H 0.113 0.887 40 H 0.233 0.767 41 H 0.089 0.911 42 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -28.723 6.654 5.398 29.974 hybrid contribution 1.716 -0.518 0.070 1.794 sum -27.006 6.137 5.468 28.230 Atomic orbital electron populations 1.21821 0.89539 1.04518 1.04088 1.23363 0.97544 0.78906 1.02433 1.86515 1.22232 1.33822 1.83775 1.21524 0.81064 0.90119 0.71826 1.90849 1.61409 1.43873 1.47441 1.18958 0.93122 0.90567 1.10478 1.21721 1.00922 0.91074 0.95331 1.21440 0.94356 0.97738 0.98031 1.21598 0.93524 0.98285 0.98224 1.17510 0.82244 0.93478 1.01954 1.42338 1.04044 1.29612 1.56001 1.15947 0.81362 0.82374 0.80075 1.90961 1.74919 1.36672 1.46643 1.44623 1.03309 1.34459 1.54710 1.20630 0.86199 0.93441 0.98580 1.20327 0.87546 0.85412 0.84571 1.90470 1.84415 1.32028 1.44085 1.41843 1.05445 1.27823 1.44326 1.19797 0.81995 1.13976 1.30835 0.89371 1.26161 1.04585 0.95095 0.95406 1.69690 1.35810 1.17741 1.32427 0.84783 0.76301 0.78373 0.78345 1.19283 1.19757 1.19630 1.21121 0.94182 0.97487 0.98004 0.88249 0.90717 0.90919 0.91466 0.91787 0.82051 0.80147 0.81293 0.73271 0.74699 0.89125 0.88746 0.76737 0.91073 0.87164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 10.29 71.98 0.74 -0.53 16 2 C 0.05 0.86 6.19 71.98 0.45 1.30 16 3 O -0.35 -7.31 9.47 -56.15 -0.53 -7.84 16 4 C 0.51 14.10 7.90 70.33 0.56 14.65 16 5 O -0.54 -19.50 16.13 19.93 0.32 -19.18 16 6 C -0.13 -3.17 5.87 -20.11 -0.12 -3.29 16 7 C -0.07 -1.08 9.61 22.55 0.22 -0.86 16 8 C -0.10 -1.00 10.02 22.21 0.22 -0.78 16 9 C -0.10 -1.27 9.95 22.45 0.22 -1.04 16 10 C 0.14 3.23 6.27 38.10 0.24 3.47 16 11 N -0.67 -15.31 5.35 -317.27 -1.70 -17.00 16 12 C 0.70 22.51 8.30 179.05 1.49 23.99 16 13 O -0.61 -24.56 14.03 -4.01 -0.06 -24.62 16 14 N -0.71 -23.14 5.53 -482.30 -2.67 -25.81 16 15 C 0.14 5.18 6.15 85.63 0.53 5.71 16 16 C 0.43 19.97 7.85 87.66 0.69 20.66 16 17 O -0.62 -31.58 15.24 -3.09 -0.05 -31.62 16 18 N -0.56 -28.17 5.29 -306.98 -1.62 -29.79 16 19 C -0.34 -18.55 9.68 84.04 0.81 -17.74 16 20 H 0.09 5.09 7.16 -2.91 -0.02 5.07 16 21 C -0.01 -0.62 5.50 84.93 0.47 -0.15 16 22 N -0.92 -49.07 13.05 21.66 0.28 -48.79 16 23 Si 1.00 41.81 29.55 68.60 2.03 43.84 16 24 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 25 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 26 H -0.27 -10.90 7.11 99.48 0.71 -10.20 16 27 C -0.09 -2.52 8.20 22.67 0.19 -2.34 16 28 H 0.10 0.53 8.14 -2.38 -0.02 0.51 16 29 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.16 1.62 7.61 -2.91 -0.02 1.60 16 34 H 0.18 0.34 8.06 -2.91 -0.02 0.31 16 35 H 0.17 1.05 8.06 -2.91 -0.02 1.03 16 36 H 0.43 6.47 8.83 -92.71 -0.82 5.65 16 37 H 0.41 12.60 7.46 -92.71 -0.69 11.91 16 38 H 0.09 3.29 8.14 -2.39 -0.02 3.27 16 39 H 0.09 3.35 8.14 -2.39 -0.02 3.33 16 40 H 0.40 19.44 7.90 -92.71 -0.73 18.71 16 41 H 0.28 13.98 8.31 -92.71 -0.77 13.21 16 42 H 0.11 4.15 6.00 -2.91 -0.02 4.13 16 Total: -1.00 -78.14 373.13 1.57 -76.57 By element: Atomic # 1 Polarization: 42.32 SS G_CDS: -1.14 Total: 41.18 kcal Atomic # 6 Polarization: 36.36 SS G_CDS: 6.69 Total: 43.05 kcal Atomic # 7 Polarization: -115.69 SS G_CDS: -5.71 Total: -121.39 kcal Atomic # 8 Polarization: -82.95 SS G_CDS: -0.31 Total: -83.26 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.84 kcal Total: -78.14 1.57 -76.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348859969.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.731 kcal (2) G-P(sol) polarization free energy of solvation -78.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds