Wall clock time and date at job start Tue Mar 31 2020 18:17:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42908 * 109.46975 * 2 1 4 4 C 1.35956 * 116.99768 * 179.97438 * 3 2 1 5 5 C 1.38750 * 119.97999 * 359.72726 * 4 3 2 6 6 C 1.38055 * 120.01840 * 179.76390 * 5 4 3 7 7 C 1.38918 * 119.97987 * 0.52559 * 6 5 4 8 8 N 1.39867 * 120.02168 * 179.69733 * 7 6 5 9 9 C 1.34783 * 119.99715 * 33.37563 * 8 7 6 10 10 O 1.21388 * 119.99971 * 5.27910 * 9 8 7 11 11 C 1.49336 * 119.99827 * 185.26970 * 9 8 7 12 12 O 1.21358 * 119.99782 * 0.02562 * 11 9 8 13 13 N 1.34774 * 119.99603 * 179.97438 * 11 9 8 14 14 C 1.46498 * 119.99595 * 180.02562 * 13 11 9 15 15 C 1.50705 * 109.47134 * 180.02562 * 14 13 11 16 16 O 1.21294 * 119.99593 * 0.02562 * 15 14 13 17 17 N 1.34773 * 120.00298 * 180.02562 * 15 14 13 18 18 C 1.37096 * 120.00387 * 180.02562 * 17 15 14 19 19 H 1.08004 * 119.99859 * 359.97438 * 18 17 15 20 20 C 1.38947 * 120.00364 * 180.02562 * 18 17 15 21 21 N 1.31416 * 119.99815 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 120.00069 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47094 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.46784 * 119.99599 * 22 20 18 25 25 H 1.48501 * 109.46927 * 239.99630 * 22 20 18 26 26 C 1.38917 * 119.95699 * 359.73210 * 7 6 5 27 27 C 1.38057 * 119.98431 * 359.97438 * 26 7 6 28 28 H 1.09003 * 109.47355 * 59.99409 * 1 2 3 29 29 H 1.08991 * 109.47498 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46841 * 300.00028 * 1 2 3 31 31 H 1.09000 * 109.47173 * 240.00181 * 2 1 3 32 32 H 1.08993 * 109.47180 * 119.99801 * 2 1 3 33 33 H 1.08001 * 119.98858 * 359.97438 * 5 4 3 34 34 H 1.08000 * 120.00998 * 180.23712 * 6 5 4 35 35 H 0.97003 * 120.00234 * 213.37414 * 8 7 6 36 36 H 0.97003 * 120.00456 * 0.02562 * 13 11 9 37 37 H 1.08994 * 109.47494 * 300.00015 * 14 13 11 38 38 H 1.08995 * 109.47686 * 60.00481 * 14 13 11 39 39 H 0.97001 * 120.00157 * 359.97438 * 17 15 14 40 40 H 0.96997 * 119.99606 * 179.97438 * 21 20 18 41 41 H 1.08012 * 120.00918 * 179.97438 * 26 7 6 42 42 H 1.07996 * 119.99126 * 180.02562 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.3542 1.5255 0.0005 5 6 4.1990 0.4248 0.0068 6 6 5.5677 0.6047 0.0024 7 6 6.0992 1.8883 0.0028 8 7 7.4858 2.0715 0.0048 9 6 8.2825 1.1933 -0.6360 10 8 7.7933 0.2984 -1.2942 11 6 9.7670 1.3213 -0.5361 12 8 10.2559 2.2159 0.1222 13 7 10.5636 0.4428 -1.1764 14 6 12.0199 0.5680 -1.0781 15 6 12.6737 -0.5282 -1.8793 16 8 11.9903 -1.3345 -2.4744 17 7 14.0176 -0.6127 -1.9347 18 6 14.6124 -1.6097 -2.6640 19 1 14.0039 -2.3276 -3.1939 20 6 15.9979 -1.6971 -2.7207 21 7 16.7383 -0.8238 -2.0755 22 14 16.8082 -3.0560 -3.7139 23 1 15.7615 -3.9027 -4.3404 24 1 17.6589 -2.4553 -4.7725 25 1 17.6484 -3.8904 -2.8177 26 6 5.2525 2.9896 0.0020 27 6 3.8840 2.8078 0.0002 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 3.7856 -0.5729 0.0116 34 1 6.2252 -0.2521 0.0034 35 1 7.8740 2.8307 0.4672 36 1 10.1728 -0.2725 -1.7024 37 1 12.3286 1.5372 -1.4697 38 1 12.3221 0.4851 -0.0341 39 1 14.5642 0.0323 -1.4591 40 1 17.7056 -0.8851 -2.1148 41 1 5.6648 3.9879 0.0027 42 1 3.2257 3.6639 -0.0009 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357302361.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:31 Heat of formation + Delta-G solvation = -113.534992 kcal Electronic energy + Delta-G solvation = -26830.766345 eV Core-core repulsion = 22583.556269 eV Total energy + Delta-G solvation = -4247.210075 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.19653 -40.23713 -39.09930 -38.16198 -37.58231 -35.16046 -34.38739 -33.73625 -32.16614 -31.44127 -31.26680 -29.19233 -28.15595 -25.27920 -24.48071 -24.09815 -22.60201 -21.73974 -20.32210 -19.79891 -18.87051 -18.60200 -18.09422 -17.52672 -16.72688 -16.47815 -16.27922 -15.81469 -15.45870 -15.31672 -14.88744 -14.76159 -14.56831 -14.13382 -14.06522 -13.84484 -13.76038 -13.58192 -13.44784 -13.10726 -12.78027 -12.55109 -12.31237 -12.12986 -12.07502 -11.74691 -11.65329 -11.39582 -11.17358 -11.09602 -10.43333 -10.35831 -10.24175 -9.71524 -9.69346 -9.31623 -9.11846 -8.71020 -8.15145 -8.03403 -6.55971 -3.97992 0.83242 1.03409 1.50964 2.19870 2.84261 3.07068 3.09954 3.20836 3.27568 3.49863 3.54259 3.66940 4.07085 4.38339 4.48072 4.49887 4.54236 4.67182 4.75405 4.80855 4.89475 5.02510 5.11995 5.16672 5.21975 5.34926 5.52825 5.60462 5.69830 5.70099 5.78922 5.94284 5.96760 6.06388 6.07826 6.32315 6.45496 6.83751 7.07538 7.34973 7.42740 7.66022 7.85483 8.00144 8.39408 9.00234 9.33041 9.80698 10.60798 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.027321 B = 0.001702 C = 0.001613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.608150 B =16451.115687 C =17352.894945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.053 3.947 3 O -0.317 6.317 4 C 0.116 3.884 5 C -0.188 4.188 6 C -0.078 4.078 7 C 0.107 3.893 8 N -0.645 5.645 9 C 0.510 3.490 10 O -0.495 6.495 11 C 0.507 3.493 12 O -0.528 6.528 13 N -0.670 5.670 14 C 0.106 3.894 15 C 0.425 3.575 16 O -0.592 6.592 17 N -0.546 5.546 18 C -0.305 4.305 19 H 0.107 0.893 20 C 0.027 3.973 21 N -0.893 5.893 22 Si 0.933 3.067 23 H -0.267 1.267 24 H -0.280 1.280 25 H -0.280 1.280 26 C -0.100 4.100 27 C -0.133 4.133 28 H 0.066 0.934 29 H 0.078 0.922 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.132 0.868 34 H 0.140 0.860 35 H 0.423 0.577 36 H 0.424 0.576 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.396 0.604 40 H 0.274 0.726 41 H 0.136 0.864 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.733 7.070 7.303 27.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.022 4.022 3 O -0.231 6.231 4 C 0.071 3.929 5 C -0.207 4.207 6 C -0.098 4.098 7 C 0.014 3.986 8 N -0.293 5.293 9 C 0.292 3.708 10 O -0.368 6.368 11 C 0.286 3.714 12 O -0.406 6.406 13 N -0.325 5.325 14 C -0.021 4.021 15 C 0.210 3.790 16 O -0.479 6.479 17 N -0.181 5.181 18 C -0.435 4.435 19 H 0.125 0.875 20 C -0.176 4.176 21 N -0.534 5.534 22 Si 0.760 3.240 23 H -0.191 1.191 24 H -0.206 1.206 25 H -0.206 1.206 26 C -0.120 4.120 27 C -0.152 4.152 28 H 0.085 0.915 29 H 0.097 0.903 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.150 0.850 34 H 0.157 0.843 35 H 0.261 0.739 36 H 0.264 0.736 37 H 0.110 0.890 38 H 0.110 0.890 39 H 0.230 0.770 40 H 0.084 0.916 41 H 0.154 0.846 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -26.024 6.622 6.891 27.724 hybrid contribution 1.052 -0.416 -0.191 1.147 sum -24.973 6.206 6.701 26.590 Atomic orbital electron populations 1.21775 0.92700 1.02926 1.03499 1.22804 0.95890 0.81935 1.01607 1.86065 1.18919 1.29360 1.88780 1.18993 0.82349 0.94076 0.97529 1.21138 0.93528 0.98345 1.07676 1.20994 0.94793 0.96498 0.97490 1.17621 0.82113 0.94100 1.04792 1.43090 1.04377 1.29127 1.52672 1.20352 0.88272 0.82558 0.79654 1.90811 1.75998 1.32365 1.37628 1.19689 0.87013 0.83264 0.81450 1.90766 1.75894 1.33315 1.40575 1.45510 1.06606 1.31199 1.49140 1.21141 0.79030 1.00108 1.01863 1.19632 0.83717 0.88309 0.87319 1.90540 1.62681 1.44505 1.50141 1.41775 1.04137 1.28194 1.44009 1.19803 0.89961 1.07443 1.26269 0.87517 1.25333 0.96266 0.98441 0.97600 1.69620 1.06391 1.35584 1.41765 0.85744 0.79070 0.80135 0.79075 1.19088 1.20576 1.20586 1.20727 0.92160 0.97934 1.01159 1.20183 0.94299 0.94998 1.05723 0.91496 0.90322 0.91541 0.91861 0.91941 0.85023 0.84270 0.73919 0.73553 0.89026 0.89027 0.77002 0.91588 0.84606 0.84651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 10.28 37.16 0.38 -0.33 16 2 C 0.05 0.34 5.46 37.16 0.20 0.54 16 3 O -0.32 -2.92 10.14 -19.60 -0.20 -3.12 16 4 C 0.12 1.14 6.69 -39.20 -0.26 0.88 16 5 C -0.19 -1.86 9.03 -39.46 -0.36 -2.22 16 6 C -0.08 -0.89 8.65 -39.40 -0.34 -1.23 16 7 C 0.11 1.16 6.28 -83.69 -0.53 0.64 16 8 N -0.65 -7.08 5.33 -10.27 -0.05 -7.14 16 9 C 0.51 7.04 7.62 -11.64 -0.09 6.95 16 10 O -0.50 -7.88 14.16 5.46 0.08 -7.80 16 11 C 0.51 7.69 7.88 -11.64 -0.09 7.60 16 12 O -0.53 -8.49 16.48 5.49 0.09 -8.40 16 13 N -0.67 -11.16 5.52 -61.95 -0.34 -11.51 16 14 C 0.11 1.84 6.15 -5.19 -0.03 1.81 16 15 C 0.42 9.53 7.85 -10.98 -0.09 9.45 16 16 O -0.59 -15.17 15.24 5.54 0.08 -15.09 16 17 N -0.55 -13.21 5.29 -10.96 -0.06 -13.27 16 18 C -0.31 -8.18 9.68 -14.94 -0.14 -8.33 16 19 H 0.11 3.00 7.16 -52.48 -0.38 2.62 16 20 C 0.03 0.69 5.50 -17.47 -0.10 0.59 16 21 N -0.89 -23.41 13.05 55.50 0.72 -22.68 16 22 Si 0.93 20.31 29.55 -169.99 -5.02 15.29 16 23 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 24 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 25 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 26 C -0.10 -0.87 9.96 -39.40 -0.39 -1.27 16 27 C -0.13 -1.18 9.98 -39.46 -0.39 -1.57 16 28 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.38 7.67 -51.93 -0.40 -0.02 16 32 H 0.06 0.35 7.64 -51.93 -0.40 -0.05 16 33 H 0.13 1.06 6.29 -52.49 -0.33 0.73 16 34 H 0.14 1.73 6.41 -52.49 -0.34 1.39 16 35 H 0.42 3.78 8.30 -40.82 -0.34 3.45 16 36 H 0.42 7.53 6.91 -40.82 -0.28 7.25 16 37 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 38 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 39 H 0.40 9.11 7.90 -40.82 -0.32 8.78 16 40 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 41 H 0.14 0.85 8.06 -52.48 -0.42 0.43 16 42 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 LS Contribution 370.51 15.07 5.58 5.58 Total: -1.00 -31.78 370.51 -6.22 -38.00 By element: Atomic # 1 Polarization: 21.50 SS G_CDS: -4.87 Total: 16.62 kcal Atomic # 6 Polarization: 15.73 SS G_CDS: -2.23 Total: 13.51 kcal Atomic # 7 Polarization: -54.86 SS G_CDS: 0.27 Total: -54.59 kcal Atomic # 8 Polarization: -34.46 SS G_CDS: 0.05 Total: -34.40 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.78 -6.22 -38.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357302361.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.536 kcal (2) G-P(sol) polarization free energy of solvation -31.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds