Wall clock time and date at job start Tue Mar 31 2020 18:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42908 * 109.46975 * 2 1 4 4 C 1.35956 * 116.99768 * 179.97438 * 3 2 1 5 5 C 1.38750 * 119.97999 * 359.72726 * 4 3 2 6 6 C 1.38055 * 120.01840 * 179.76390 * 5 4 3 7 7 C 1.38918 * 119.97987 * 0.52559 * 6 5 4 8 8 N 1.39867 * 120.02168 * 179.69733 * 7 6 5 9 9 C 1.34783 * 119.99715 * 33.37563 * 8 7 6 10 10 O 1.21388 * 119.99971 * 5.27910 * 9 8 7 11 11 C 1.49336 * 119.99827 * 185.26970 * 9 8 7 12 12 O 1.21358 * 119.99782 * 0.02562 * 11 9 8 13 13 N 1.34774 * 119.99603 * 179.97438 * 11 9 8 14 14 C 1.46498 * 119.99595 * 180.02562 * 13 11 9 15 15 C 1.50705 * 109.47134 * 180.02562 * 14 13 11 16 16 O 1.21294 * 119.99593 * 0.02562 * 15 14 13 17 17 N 1.34773 * 120.00298 * 180.02562 * 15 14 13 18 18 C 1.37096 * 120.00387 * 180.02562 * 17 15 14 19 19 H 1.08004 * 119.99859 * 359.97438 * 18 17 15 20 20 C 1.38947 * 120.00364 * 180.02562 * 18 17 15 21 21 N 1.31416 * 119.99815 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 120.00069 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47094 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.46784 * 119.99599 * 22 20 18 25 25 H 1.48501 * 109.46927 * 239.99630 * 22 20 18 26 26 C 1.38917 * 119.95699 * 359.73210 * 7 6 5 27 27 C 1.38057 * 119.98431 * 359.97438 * 26 7 6 28 28 H 1.09003 * 109.47355 * 59.99409 * 1 2 3 29 29 H 1.08991 * 109.47498 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46841 * 300.00028 * 1 2 3 31 31 H 1.09000 * 109.47173 * 240.00181 * 2 1 3 32 32 H 1.08993 * 109.47180 * 119.99801 * 2 1 3 33 33 H 1.08001 * 119.98858 * 359.97438 * 5 4 3 34 34 H 1.08000 * 120.00998 * 180.23712 * 6 5 4 35 35 H 0.97003 * 120.00234 * 213.37414 * 8 7 6 36 36 H 0.97003 * 120.00456 * 0.02562 * 13 11 9 37 37 H 1.08994 * 109.47494 * 300.00015 * 14 13 11 38 38 H 1.08995 * 109.47686 * 60.00481 * 14 13 11 39 39 H 0.97001 * 120.00157 * 359.97438 * 17 15 14 40 40 H 0.96997 * 119.99606 * 179.97438 * 21 20 18 41 41 H 1.08012 * 120.00918 * 179.97438 * 26 7 6 42 42 H 1.07996 * 119.99126 * 180.02562 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.3542 1.5255 0.0005 5 6 4.1990 0.4248 0.0068 6 6 5.5677 0.6047 0.0024 7 6 6.0992 1.8883 0.0028 8 7 7.4858 2.0715 0.0048 9 6 8.2825 1.1933 -0.6360 10 8 7.7933 0.2984 -1.2942 11 6 9.7670 1.3213 -0.5361 12 8 10.2559 2.2159 0.1222 13 7 10.5636 0.4428 -1.1764 14 6 12.0199 0.5680 -1.0781 15 6 12.6737 -0.5282 -1.8793 16 8 11.9903 -1.3345 -2.4744 17 7 14.0176 -0.6127 -1.9347 18 6 14.6124 -1.6097 -2.6640 19 1 14.0039 -2.3276 -3.1939 20 6 15.9979 -1.6971 -2.7207 21 7 16.7383 -0.8238 -2.0755 22 14 16.8082 -3.0560 -3.7139 23 1 15.7615 -3.9027 -4.3404 24 1 17.6589 -2.4553 -4.7725 25 1 17.6484 -3.8904 -2.8177 26 6 5.2525 2.9896 0.0020 27 6 3.8840 2.8078 0.0002 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 3.7856 -0.5729 0.0116 34 1 6.2252 -0.2521 0.0034 35 1 7.8740 2.8307 0.4672 36 1 10.1728 -0.2725 -1.7024 37 1 12.3286 1.5372 -1.4697 38 1 12.3221 0.4851 -0.0341 39 1 14.5642 0.0323 -1.4591 40 1 17.7056 -0.8851 -2.1148 41 1 5.6648 3.9879 0.0027 42 1 3.2257 3.6639 -0.0009 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357302361.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:30 Heat of formation + Delta-G solvation = -137.507740 kcal Electronic energy + Delta-G solvation = -26831.805881 eV Core-core repulsion = 22583.556269 eV Total energy + Delta-G solvation = -4248.249612 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.22974 -41.12329 -40.42561 -39.66856 -38.46703 -36.45341 -35.90326 -35.15956 -33.39516 -32.71429 -31.96176 -30.20391 -29.45482 -26.89496 -25.45317 -25.06614 -23.42286 -22.48951 -21.49478 -21.40498 -20.26806 -19.82226 -19.29287 -18.53692 -17.96573 -17.41905 -17.13781 -17.03577 -16.92827 -16.64752 -16.28911 -16.08312 -15.72839 -15.52700 -15.11207 -15.09701 -14.73539 -14.37161 -14.31244 -14.03229 -13.80458 -13.62169 -13.56430 -13.31298 -13.21518 -12.92545 -12.87687 -12.65533 -12.45330 -12.11993 -12.01407 -11.74842 -11.59413 -11.10812 -10.83766 -10.59802 -10.45228 -10.10344 -10.06049 -8.82778 -8.52338 -6.02213 -0.12229 0.28990 0.52731 1.08169 1.34419 1.43543 1.57145 1.87385 1.97312 2.22380 2.26499 2.46760 2.72199 3.03992 3.14940 3.25295 3.77890 3.85347 4.06038 4.11829 4.15905 4.19930 4.36004 4.36931 4.37089 4.37468 4.43650 4.64827 4.91337 4.93891 4.95331 5.01470 5.17804 5.21209 5.27088 5.33505 5.38181 5.66006 5.83042 5.91173 6.20004 6.39740 6.46867 6.57348 6.76233 7.03094 7.41894 7.93443 8.64479 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.027321 B = 0.001702 C = 0.001613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.608150 B =16451.115687 C =17352.894945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.043 3.957 3 O -0.327 6.327 4 C 0.112 3.888 5 C -0.194 4.194 6 C -0.095 4.095 7 C 0.085 3.915 8 N -0.626 5.626 9 C 0.513 3.487 10 O -0.522 6.522 11 C 0.514 3.486 12 O -0.533 6.533 13 N -0.678 5.678 14 C 0.119 3.881 15 C 0.428 3.572 16 O -0.626 6.626 17 N -0.555 5.555 18 C -0.339 4.339 19 H 0.084 0.916 20 C -0.007 4.007 21 N -0.913 5.913 22 Si 0.995 3.005 23 H -0.272 1.272 24 H -0.271 1.271 25 H -0.271 1.271 26 C -0.088 4.088 27 C -0.135 4.135 28 H 0.063 0.937 29 H 0.096 0.904 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.144 0.856 34 H 0.122 0.878 35 H 0.433 0.567 36 H 0.419 0.581 37 H 0.111 0.889 38 H 0.111 0.889 39 H 0.401 0.599 40 H 0.280 0.720 41 H 0.165 0.835 42 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.630 8.137 7.805 28.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.031 4.031 3 O -0.241 6.241 4 C 0.066 3.934 5 C -0.213 4.213 6 C -0.115 4.115 7 C -0.008 4.008 8 N -0.274 5.274 9 C 0.295 3.705 10 O -0.397 6.397 11 C 0.294 3.706 12 O -0.411 6.411 13 N -0.332 5.332 14 C -0.008 4.008 15 C 0.215 3.785 16 O -0.514 6.514 17 N -0.191 5.191 18 C -0.468 4.468 19 H 0.102 0.898 20 C -0.208 4.208 21 N -0.553 5.553 22 Si 0.819 3.181 23 H -0.197 1.197 24 H -0.196 1.196 25 H -0.196 1.196 26 C -0.108 4.108 27 C -0.154 4.154 28 H 0.082 0.918 29 H 0.115 0.885 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.162 0.838 34 H 0.140 0.860 35 H 0.273 0.727 36 H 0.258 0.742 37 H 0.129 0.871 38 H 0.129 0.871 39 H 0.236 0.764 40 H 0.090 0.910 41 H 0.183 0.817 42 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -26.935 7.743 7.436 28.996 hybrid contribution 1.176 -0.708 -0.298 1.404 sum -25.759 7.035 7.138 27.640 Atomic orbital electron populations 1.21797 0.91340 1.04096 1.03335 1.23055 0.97011 0.80920 1.02133 1.86066 1.18476 1.30995 1.88585 1.19211 0.82722 0.94450 0.97047 1.21256 0.93027 0.99315 1.07683 1.20986 0.95318 0.96466 0.98702 1.17814 0.81921 0.94660 1.06391 1.42944 1.04455 1.28494 1.51499 1.20056 0.87663 0.82866 0.79936 1.90811 1.76073 1.33638 1.39151 1.19826 0.87515 0.82541 0.80670 1.90761 1.76230 1.33408 1.40703 1.45525 1.06327 1.31621 1.49740 1.21023 0.79254 0.98608 1.01908 1.20422 0.83113 0.88546 0.86404 1.90518 1.63363 1.46126 1.51422 1.41795 1.04863 1.28103 1.44307 1.19762 0.90634 1.08510 1.27877 0.89773 1.26077 0.96204 1.00353 0.98178 1.69671 1.06876 1.36503 1.42215 0.84835 0.77894 0.77496 0.77896 1.19702 1.19577 1.19583 1.21005 0.91865 0.98539 0.99361 1.20519 0.94670 0.95404 1.04842 0.91779 0.88506 0.91547 0.91607 0.91163 0.83824 0.85957 0.72669 0.74192 0.87074 0.87093 0.76444 0.91012 0.81745 0.82558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 10.28 71.98 0.74 -0.43 16 2 C 0.04 0.51 5.46 71.98 0.39 0.90 16 3 O -0.33 -5.60 10.14 -93.06 -0.94 -6.54 16 4 C 0.11 2.04 6.69 22.51 0.15 2.19 16 5 C -0.19 -3.75 9.03 22.35 0.20 -3.55 16 6 C -0.09 -2.16 8.65 22.39 0.19 -1.97 16 7 C 0.09 1.76 6.28 38.18 0.24 2.00 16 8 N -0.63 -13.05 5.33 -304.74 -1.62 -14.67 16 9 C 0.51 13.97 7.62 87.23 0.66 14.64 16 10 O -0.52 -16.84 14.16 -3.37 -0.05 -16.89 16 11 C 0.51 15.16 7.88 87.23 0.69 15.85 16 12 O -0.53 -16.26 16.48 -3.27 -0.05 -16.31 16 13 N -0.68 -22.33 5.52 -468.27 -2.59 -24.92 16 14 C 0.12 4.04 6.15 85.64 0.53 4.56 16 15 C 0.43 19.37 7.85 87.66 0.69 20.06 16 16 O -0.63 -32.80 15.24 -3.07 -0.05 -32.85 16 17 N -0.56 -27.16 5.29 -306.98 -1.62 -28.78 16 18 C -0.34 -18.47 9.68 84.04 0.81 -17.66 16 19 H 0.08 4.89 7.16 -2.91 -0.02 4.87 16 20 C -0.01 -0.36 5.50 84.92 0.47 0.10 16 21 N -0.91 -47.44 13.05 21.66 0.28 -47.16 16 22 Si 1.00 41.46 29.55 68.60 2.03 43.49 16 23 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 24 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 25 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 26 C -0.09 -1.35 9.96 22.39 0.22 -1.12 16 27 C -0.14 -2.12 9.98 22.35 0.22 -1.89 16 28 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.07 0.53 8.14 -2.38 -0.02 0.51 16 31 H 0.07 0.73 7.67 -2.39 -0.02 0.71 16 32 H 0.07 0.70 7.64 -2.39 -0.02 0.68 16 33 H 0.14 2.26 6.29 -2.91 -0.02 2.25 16 34 H 0.12 3.17 6.41 -2.91 -0.02 3.16 16 35 H 0.43 6.98 8.30 -92.71 -0.77 6.21 16 36 H 0.42 15.09 6.91 -92.71 -0.64 14.45 16 37 H 0.11 3.39 8.14 -2.39 -0.02 3.37 16 38 H 0.11 3.39 8.14 -2.39 -0.02 3.37 16 39 H 0.40 18.51 7.90 -92.71 -0.73 17.78 16 40 H 0.28 13.60 8.31 -92.71 -0.77 12.83 16 41 H 0.17 1.50 8.06 -2.90 -0.02 1.48 16 42 H 0.16 1.75 8.06 -2.91 -0.02 1.73 16 Total: -1.00 -68.24 370.51 0.57 -67.67 By element: Atomic # 1 Polarization: 44.32 SS G_CDS: -1.03 Total: 43.29 kcal Atomic # 6 Polarization: 27.47 SS G_CDS: 6.21 Total: 33.68 kcal Atomic # 7 Polarization: -109.98 SS G_CDS: -5.55 Total: -115.53 kcal Atomic # 8 Polarization: -71.51 SS G_CDS: -1.09 Total: -72.60 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 2.03 Total: 43.49 kcal Total: -68.24 0.57 -67.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357302361.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.840 kcal (2) G-P(sol) polarization free energy of solvation -68.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds