Wall clock time and date at job start Tue Mar 31 2020 18:17:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42906 * 109.47277 * 2 1 4 4 C 1.35955 * 117.00076 * 179.97438 * 3 2 1 5 5 C 1.38546 * 120.08882 * 0.02562 * 4 3 2 6 6 C 1.38236 * 120.02051 * 179.97438 * 5 4 3 7 7 C 1.38306 * 120.19584 * 0.02562 * 6 5 4 8 8 C 1.38167 * 120.17142 * 359.97438 * 7 6 5 9 9 C 1.38791 * 119.97822 * 0.02562 * 8 7 6 10 10 N 1.39879 * 120.09589 * 180.02562 * 9 8 7 11 11 C 1.34772 * 120.00304 * 24.82417 * 10 9 8 12 12 O 1.21394 * 119.99518 * 5.52708 * 11 10 9 13 13 C 1.49328 * 120.00556 * 185.53319 * 11 10 9 14 14 O 1.21372 * 119.99846 * 359.97438 * 13 11 10 15 15 N 1.34782 * 120.00548 * 180.02562 * 13 11 10 16 16 C 1.46493 * 120.00175 * 180.02562 * 15 13 11 17 17 C 1.50706 * 109.47227 * 179.97438 * 16 15 13 18 18 O 1.21290 * 119.99405 * 359.97438 * 17 16 15 19 19 N 1.34769 * 120.00180 * 179.97438 * 17 16 15 20 20 C 1.37097 * 119.99998 * 179.97438 * 19 17 16 21 21 H 1.07997 * 119.99905 * 0.02562 * 20 19 17 22 22 C 1.38956 * 120.00062 * 180.02562 * 20 19 17 23 23 N 1.31410 * 119.99864 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99920 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47028 * 90.00198 * 24 22 20 26 26 H 1.48494 * 109.46804 * 210.00076 * 24 22 20 27 27 H 1.48493 * 109.46970 * 330.00125 * 24 22 20 28 28 H 1.08997 * 109.47075 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47178 * 300.00046 * 1 2 3 30 30 H 1.09004 * 109.47717 * 60.00020 * 1 2 3 31 31 H 1.09000 * 109.47339 * 240.00484 * 2 1 3 32 32 H 1.08995 * 109.47193 * 120.00075 * 2 1 3 33 33 H 1.07999 * 119.99020 * 359.97438 * 5 4 3 34 34 H 1.08003 * 119.90674 * 180.27605 * 6 5 4 35 35 H 1.08000 * 119.91694 * 179.97438 * 7 6 5 36 36 H 1.08001 * 120.01125 * 180.02562 * 8 7 6 37 37 H 0.96996 * 120.00257 * 204.81959 * 10 9 8 38 38 H 0.97000 * 119.99650 * 359.97438 * 15 13 11 39 39 H 1.09004 * 109.47208 * 299.99105 * 16 15 13 40 40 H 1.08994 * 109.47665 * 59.99442 * 16 15 13 41 41 H 0.97004 * 120.00470 * 0.02562 * 19 17 16 42 42 H 0.96999 * 120.00331 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3542 1.5254 0.0005 5 6 4.1998 0.4280 0.0005 6 6 5.5700 0.6107 0.0005 7 6 6.1015 1.8876 0.0011 8 6 5.2656 2.9877 0.0011 9 6 3.8888 2.8125 0.0011 10 7 3.0402 3.9246 0.0006 11 6 3.4736 5.1027 -0.4899 12 8 4.5622 5.1750 -1.0221 13 6 2.6147 6.3192 -0.3786 14 8 1.5261 6.2468 0.1532 15 7 3.0478 7.4973 -0.8695 16 6 2.2054 8.6907 -0.7598 17 6 2.9158 9.8659 -1.3807 18 8 4.0176 9.7208 -1.8666 19 7 2.3268 11.0780 -1.3961 20 6 2.9733 12.1472 -1.9604 21 1 3.9544 12.0180 -2.3931 22 6 2.3663 13.3970 -1.9758 23 7 1.1728 13.5543 -1.4489 24 14 3.2469 14.8536 -2.7455 25 1 2.8950 14.9402 -4.1855 26 1 2.8313 16.1027 -2.0583 27 1 4.7144 14.6758 -2.6043 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3635 0.5138 -0.8900 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 3.7884 -0.5705 0.0005 34 1 6.2276 -0.2461 -0.0040 35 1 7.1727 2.0252 0.0015 36 1 5.6834 3.9836 0.0012 37 1 2.1399 3.8478 0.3532 38 1 3.9177 7.5550 -1.2949 39 1 1.2629 8.5194 -1.2800 40 1 2.0073 8.9004 0.2913 41 1 1.4458 11.1942 -1.0071 42 1 0.7492 14.4269 -1.4593 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357303884.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:34 Heat of formation + Delta-G solvation = -110.551554 kcal Electronic energy + Delta-G solvation = -27382.411371 eV Core-core repulsion = 23135.330667 eV Total energy + Delta-G solvation = -4247.080704 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.30182 -40.17781 -38.93305 -38.10318 -37.54096 -35.39462 -34.44065 -33.72908 -32.20986 -31.42240 -30.53710 -29.48200 -28.21999 -25.32145 -24.62031 -23.97434 -22.28122 -21.96145 -20.22955 -19.76294 -19.06959 -18.41707 -17.98904 -17.41914 -16.69246 -16.55790 -16.13242 -15.80167 -15.47076 -15.23903 -15.13446 -14.81235 -14.60746 -14.32554 -14.04345 -13.90903 -13.68525 -13.51106 -13.37276 -12.99723 -12.51686 -12.36545 -12.28416 -12.04612 -11.96020 -11.68932 -11.63524 -11.29654 -11.14050 -11.13294 -10.80063 -10.46842 -10.33468 -9.66350 -9.62221 -9.08177 -8.88663 -8.68739 -8.13317 -8.09438 -6.54066 -3.96055 0.80526 1.11521 1.55445 2.21122 2.75939 3.10192 3.13575 3.21686 3.27103 3.54974 3.57147 3.69201 4.08752 4.40849 4.46662 4.50264 4.56270 4.71778 4.77900 4.80043 4.89825 5.08939 5.13820 5.16153 5.26805 5.38193 5.52114 5.64129 5.72929 5.79122 5.81861 5.94668 5.97055 6.12940 6.27527 6.36156 6.51715 6.85023 7.05031 7.38955 7.44277 7.69458 7.87487 8.03863 8.41461 9.01932 9.35019 9.82798 10.62663 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.023357 B = 0.001958 C = 0.001826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.482343 B =14296.713173 C =15327.801230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.057 3.943 3 O -0.317 6.317 4 C 0.105 3.895 5 C -0.190 4.190 6 C -0.098 4.098 7 C -0.134 4.134 8 C -0.094 4.094 9 C 0.119 3.881 10 N -0.635 5.635 11 C 0.510 3.490 12 O -0.496 6.496 13 C 0.507 3.493 14 O -0.526 6.526 15 N -0.670 5.670 16 C 0.106 3.894 17 C 0.425 3.575 18 O -0.592 6.592 19 N -0.547 5.547 20 C -0.305 4.305 21 H 0.106 0.894 22 C 0.026 3.974 23 N -0.894 5.894 24 Si 0.934 3.066 25 H -0.276 1.276 26 H -0.282 1.282 27 H -0.268 1.268 28 H 0.078 0.922 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.131 0.869 34 H 0.126 0.874 35 H 0.129 0.871 36 H 0.154 0.846 37 H 0.427 0.573 38 H 0.424 0.576 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.396 0.604 42 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.735 -27.570 5.414 28.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.018 4.018 3 O -0.231 6.231 4 C 0.057 3.943 5 C -0.210 4.210 6 C -0.117 4.117 7 C -0.152 4.152 8 C -0.114 4.114 9 C 0.025 3.975 10 N -0.281 5.281 11 C 0.292 3.708 12 O -0.369 6.369 13 C 0.286 3.714 14 O -0.404 6.404 15 N -0.325 5.325 16 C -0.021 4.021 17 C 0.211 3.789 18 O -0.479 6.479 19 N -0.182 5.182 20 C -0.434 4.434 21 H 0.124 0.876 22 C -0.177 4.177 23 N -0.534 5.534 24 Si 0.761 3.239 25 H -0.202 1.202 26 H -0.208 1.208 27 H -0.193 1.193 28 H 0.097 0.903 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.149 0.851 34 H 0.144 0.856 35 H 0.147 0.853 36 H 0.172 0.828 37 H 0.265 0.735 38 H 0.264 0.736 39 H 0.110 0.890 40 H 0.110 0.890 41 H 0.230 0.770 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.153 -27.215 5.097 27.712 hybrid contribution -0.241 0.554 -0.156 0.624 sum 0.912 -26.661 4.941 27.130 Atomic orbital electron populations 1.21790 0.92527 1.02924 1.03854 1.22791 0.95998 0.81585 1.01389 1.86034 1.18385 1.29762 1.88960 1.18635 0.82883 0.92345 1.00400 1.21030 0.94193 0.97393 1.08346 1.20964 0.94192 0.97473 0.99041 1.21014 1.00098 0.91795 1.02340 1.21377 0.90303 1.01448 0.98304 1.17129 0.90248 0.83508 1.06654 1.42955 1.17938 1.07553 1.59681 1.20336 0.87116 0.84510 0.78843 1.90759 1.21144 1.84908 1.40108 1.19665 0.86638 0.84322 0.80750 1.90774 1.20994 1.85344 1.43268 1.45494 1.23082 1.06887 1.57009 1.21139 0.94100 0.84289 1.02609 1.19631 0.88022 0.84405 0.86867 1.90537 1.21214 1.84040 1.52060 1.41771 1.18806 1.06668 1.50909 1.19747 1.02903 0.86176 1.34613 0.87574 1.25339 0.95969 0.99190 0.97212 1.69610 1.14173 1.25494 1.44128 0.85793 0.79621 0.79644 0.78880 1.20235 1.20789 1.19268 0.90315 0.91320 0.91337 0.91961 0.91960 0.85100 0.85619 0.85266 0.82822 0.73513 0.73555 0.89036 0.89034 0.76996 0.91548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 10.28 37.15 0.38 -0.42 16 2 C 0.06 0.36 5.46 37.15 0.20 0.57 16 3 O -0.32 -3.12 9.55 -19.60 -0.19 -3.31 16 4 C 0.10 1.10 6.70 -39.05 -0.26 0.84 16 5 C -0.19 -1.62 9.03 -39.47 -0.36 -1.97 16 6 C -0.10 -0.80 10.04 -39.56 -0.40 -1.19 16 7 C -0.13 -1.26 10.04 -39.58 -0.40 -1.66 16 8 C -0.09 -1.12 8.72 -39.40 -0.34 -1.46 16 9 C 0.12 1.46 6.44 -83.56 -0.54 0.92 16 10 N -0.64 -8.08 5.27 -10.19 -0.05 -8.13 16 11 C 0.51 7.49 7.69 -11.64 -0.09 7.40 16 12 O -0.50 -8.03 13.64 5.46 0.07 -7.96 16 13 C 0.51 8.07 7.89 -11.64 -0.09 7.98 16 14 O -0.53 -8.93 16.48 5.48 0.09 -8.84 16 15 N -0.67 -11.46 5.52 -61.95 -0.34 -11.80 16 16 C 0.11 1.88 6.15 -5.19 -0.03 1.85 16 17 C 0.43 9.66 7.85 -10.99 -0.09 9.57 16 18 O -0.59 -15.30 15.24 5.55 0.08 -15.21 16 19 N -0.55 -13.35 5.29 -10.96 -0.06 -13.41 16 20 C -0.31 -8.23 9.68 -14.93 -0.14 -8.37 16 21 H 0.11 2.99 7.16 -52.49 -0.38 2.62 16 22 C 0.03 0.67 5.50 -17.47 -0.10 0.58 16 23 N -0.89 -23.59 13.05 55.50 0.72 -22.87 16 24 Si 0.93 20.46 29.55 -169.99 -5.02 15.44 16 25 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 26 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 27 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 28 H 0.08 0.26 8.14 -51.93 -0.42 -0.17 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.34 7.66 -51.93 -0.40 -0.06 16 32 H 0.06 0.31 7.66 -51.93 -0.40 -0.08 16 33 H 0.13 0.78 6.30 -52.49 -0.33 0.45 16 34 H 0.13 0.69 8.06 -52.48 -0.42 0.27 16 35 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 36 H 0.15 2.00 5.79 -52.49 -0.30 1.69 16 37 H 0.43 5.01 7.82 -40.82 -0.32 4.69 16 38 H 0.42 7.67 6.91 -40.82 -0.28 7.38 16 39 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 40 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 41 H 0.40 9.21 7.90 -40.82 -0.32 8.88 16 42 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 LS Contribution 368.73 15.07 5.56 5.56 Total: -1.00 -31.61 368.73 -6.21 -37.82 By element: Atomic # 1 Polarization: 22.92 SS G_CDS: -4.82 Total: 18.10 kcal Atomic # 6 Polarization: 16.87 SS G_CDS: -2.25 Total: 14.62 kcal Atomic # 7 Polarization: -56.48 SS G_CDS: 0.27 Total: -56.21 kcal Atomic # 8 Polarization: -35.38 SS G_CDS: 0.06 Total: -35.32 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.61 -6.21 -37.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357303884.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.732 kcal (2) G-P(sol) polarization free energy of solvation -31.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds