Wall clock time and date at job start Tue Mar 31 2020 18:17:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42906 * 109.47277 * 2 1 4 4 C 1.35955 * 117.00076 * 179.97438 * 3 2 1 5 5 C 1.38546 * 120.08882 * 0.02562 * 4 3 2 6 6 C 1.38236 * 120.02051 * 179.97438 * 5 4 3 7 7 C 1.38306 * 120.19584 * 0.02562 * 6 5 4 8 8 C 1.38167 * 120.17142 * 359.97438 * 7 6 5 9 9 C 1.38791 * 119.97822 * 0.02562 * 8 7 6 10 10 N 1.39879 * 120.09589 * 180.02562 * 9 8 7 11 11 C 1.34772 * 120.00304 * 24.82417 * 10 9 8 12 12 O 1.21394 * 119.99518 * 5.52708 * 11 10 9 13 13 C 1.49328 * 120.00556 * 185.53319 * 11 10 9 14 14 O 1.21372 * 119.99846 * 359.97438 * 13 11 10 15 15 N 1.34782 * 120.00548 * 180.02562 * 13 11 10 16 16 C 1.46493 * 120.00175 * 180.02562 * 15 13 11 17 17 C 1.50706 * 109.47227 * 179.97438 * 16 15 13 18 18 O 1.21290 * 119.99405 * 359.97438 * 17 16 15 19 19 N 1.34769 * 120.00180 * 179.97438 * 17 16 15 20 20 C 1.37097 * 119.99998 * 179.97438 * 19 17 16 21 21 H 1.07997 * 119.99905 * 0.02562 * 20 19 17 22 22 C 1.38956 * 120.00062 * 180.02562 * 20 19 17 23 23 N 1.31410 * 119.99864 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99920 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47028 * 90.00198 * 24 22 20 26 26 H 1.48494 * 109.46804 * 210.00076 * 24 22 20 27 27 H 1.48493 * 109.46970 * 330.00125 * 24 22 20 28 28 H 1.08997 * 109.47075 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47178 * 300.00046 * 1 2 3 30 30 H 1.09004 * 109.47717 * 60.00020 * 1 2 3 31 31 H 1.09000 * 109.47339 * 240.00484 * 2 1 3 32 32 H 1.08995 * 109.47193 * 120.00075 * 2 1 3 33 33 H 1.07999 * 119.99020 * 359.97438 * 5 4 3 34 34 H 1.08003 * 119.90674 * 180.27605 * 6 5 4 35 35 H 1.08000 * 119.91694 * 179.97438 * 7 6 5 36 36 H 1.08001 * 120.01125 * 180.02562 * 8 7 6 37 37 H 0.96996 * 120.00257 * 204.81959 * 10 9 8 38 38 H 0.97000 * 119.99650 * 359.97438 * 15 13 11 39 39 H 1.09004 * 109.47208 * 299.99105 * 16 15 13 40 40 H 1.08994 * 109.47665 * 59.99442 * 16 15 13 41 41 H 0.97004 * 120.00470 * 0.02562 * 19 17 16 42 42 H 0.96999 * 120.00331 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3542 1.5254 0.0005 5 6 4.1998 0.4280 0.0005 6 6 5.5700 0.6107 0.0005 7 6 6.1015 1.8876 0.0011 8 6 5.2656 2.9877 0.0011 9 6 3.8888 2.8125 0.0011 10 7 3.0402 3.9246 0.0006 11 6 3.4736 5.1027 -0.4899 12 8 4.5622 5.1750 -1.0221 13 6 2.6147 6.3192 -0.3786 14 8 1.5261 6.2468 0.1532 15 7 3.0478 7.4973 -0.8695 16 6 2.2054 8.6907 -0.7598 17 6 2.9158 9.8659 -1.3807 18 8 4.0176 9.7208 -1.8666 19 7 2.3268 11.0780 -1.3961 20 6 2.9733 12.1472 -1.9604 21 1 3.9544 12.0180 -2.3931 22 6 2.3663 13.3970 -1.9758 23 7 1.1728 13.5543 -1.4489 24 14 3.2469 14.8536 -2.7455 25 1 2.8950 14.9402 -4.1855 26 1 2.8313 16.1027 -2.0583 27 1 4.7144 14.6758 -2.6043 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3635 0.5138 -0.8900 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 3.7884 -0.5705 0.0005 34 1 6.2276 -0.2461 -0.0040 35 1 7.1727 2.0252 0.0015 36 1 5.6834 3.9836 0.0012 37 1 2.1399 3.8478 0.3532 38 1 3.9177 7.5550 -1.2949 39 1 1.2629 8.5194 -1.2800 40 1 2.0073 8.9004 0.2913 41 1 1.4458 11.1942 -1.0071 42 1 0.7492 14.4269 -1.4593 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357303884.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:33 Heat of formation + Delta-G solvation = -134.428259 kcal Electronic energy + Delta-G solvation = -27383.446743 eV Core-core repulsion = 23135.330667 eV Total energy + Delta-G solvation = -4248.116075 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.33991 -41.17804 -40.34827 -39.60580 -38.34457 -36.59059 -36.08573 -35.27822 -33.39991 -32.72261 -31.33068 -30.31093 -29.68123 -26.94500 -25.63730 -24.98706 -23.04843 -22.79912 -21.50538 -21.33815 -20.32206 -19.94626 -19.18953 -18.41507 -17.91924 -17.43934 -17.17957 -17.04562 -16.93884 -16.56900 -16.27471 -16.12287 -15.86751 -15.67250 -15.26009 -15.15703 -14.90298 -14.35198 -14.30586 -14.03949 -13.64173 -13.56049 -13.38800 -13.27822 -13.06980 -12.92158 -12.69311 -12.52029 -12.46451 -12.13018 -12.04155 -11.71543 -11.63887 -11.58831 -10.82135 -10.60152 -10.47352 -10.10962 -9.65563 -8.90588 -8.52311 -6.02306 -0.17754 0.37070 0.54372 1.03714 1.35662 1.43180 1.55605 1.86806 1.95144 2.11444 2.25227 2.44181 2.77524 3.02788 3.14714 3.21946 3.80046 3.94345 4.08971 4.14962 4.18072 4.22040 4.34751 4.35731 4.38104 4.40439 4.47931 4.60692 4.89711 4.92328 4.96261 5.02972 5.18829 5.26509 5.36382 5.37750 5.54366 5.75390 5.78959 5.90298 6.16163 6.33771 6.46406 6.54426 6.72716 7.02524 7.41352 7.92771 8.64312 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.023357 B = 0.001958 C = 0.001826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.482343 B =14296.713173 C =15327.801230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.048 3.952 3 O -0.335 6.335 4 C 0.101 3.899 5 C -0.188 4.188 6 C -0.087 4.087 7 C -0.140 4.140 8 C -0.112 4.112 9 C 0.085 3.915 10 N -0.622 5.622 11 C 0.512 3.488 12 O -0.517 6.517 13 C 0.514 3.486 14 O -0.535 6.535 15 N -0.675 5.675 16 C 0.118 3.882 17 C 0.429 3.571 18 O -0.625 6.625 19 N -0.555 5.555 20 C -0.338 4.338 21 H 0.085 0.915 22 C -0.009 4.009 23 N -0.913 5.913 24 Si 0.996 3.004 25 H -0.270 1.270 26 H -0.271 1.271 27 H -0.272 1.272 28 H 0.102 0.898 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.161 0.839 34 H 0.160 0.840 35 H 0.147 0.853 36 H 0.134 0.866 37 H 0.429 0.571 38 H 0.420 0.580 39 H 0.111 0.889 40 H 0.111 0.889 41 H 0.401 0.599 42 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.607 -29.751 5.724 30.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.026 4.026 3 O -0.250 6.250 4 C 0.054 3.946 5 C -0.207 4.207 6 C -0.105 4.105 7 C -0.159 4.159 8 C -0.132 4.132 9 C -0.009 4.009 10 N -0.268 5.268 11 C 0.294 3.706 12 O -0.392 6.392 13 C 0.294 3.706 14 O -0.413 6.413 15 N -0.330 5.330 16 C -0.008 4.008 17 C 0.216 3.784 18 O -0.513 6.513 19 N -0.191 5.191 20 C -0.467 4.467 21 H 0.103 0.897 22 C -0.210 4.210 23 N -0.553 5.553 24 Si 0.820 3.180 25 H -0.196 1.196 26 H -0.195 1.195 27 H -0.196 1.196 28 H 0.120 0.880 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.093 0.907 32 H 0.097 0.903 33 H 0.179 0.821 34 H 0.178 0.822 35 H 0.165 0.835 36 H 0.152 0.848 37 H 0.268 0.732 38 H 0.259 0.741 39 H 0.129 0.871 40 H 0.129 0.871 41 H 0.235 0.765 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.984 -29.439 5.433 29.952 hybrid contribution -0.212 1.042 -0.215 1.085 sum 0.773 -28.397 5.218 28.883 Atomic orbital electron populations 1.21826 0.91964 1.04192 1.02993 1.23097 0.96508 0.80259 1.02754 1.86025 1.18061 1.32042 1.88842 1.18767 0.83628 0.92167 1.00034 1.21426 0.94219 0.98080 1.06943 1.21388 0.94609 0.97866 0.96666 1.21283 1.00831 0.91801 1.01970 1.21357 0.90736 1.01518 0.99625 1.17378 0.90420 0.83924 1.09174 1.42845 1.18087 1.07231 1.58655 1.20035 0.86672 0.84682 0.79217 1.90757 1.21826 1.85167 1.41466 1.19808 0.86510 0.84284 0.79978 1.90764 1.21399 1.85509 1.43590 1.45495 1.22855 1.07119 1.57528 1.21031 0.93941 0.82493 1.03379 1.20380 0.87516 0.85037 0.85487 1.90515 1.22877 1.84763 1.53189 1.41797 1.19043 1.06888 1.51355 1.19724 1.02831 0.87750 1.36414 0.89717 1.26111 0.96608 1.01095 0.97198 1.69666 1.14894 1.26392 1.44350 0.84875 0.78209 0.76675 0.78283 1.19567 1.19526 1.19623 0.87968 0.91961 0.92414 0.90746 0.90271 0.82119 0.82192 0.83518 0.84802 0.73164 0.74099 0.87144 0.87102 0.76452 0.90997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 10.28 71.98 0.74 -0.60 16 2 C 0.05 0.50 5.46 71.98 0.39 0.89 16 3 O -0.33 -6.19 9.55 -93.05 -0.89 -7.08 16 4 C 0.10 2.01 6.70 22.62 0.15 2.16 16 5 C -0.19 -2.65 9.03 22.34 0.20 -2.45 16 6 C -0.09 -1.15 10.04 22.29 0.22 -0.92 16 7 C -0.14 -2.45 10.04 22.27 0.22 -2.23 16 8 C -0.11 -2.70 8.72 22.39 0.20 -2.50 16 9 C 0.09 2.08 6.44 38.26 0.25 2.33 16 10 N -0.62 -16.14 5.27 -304.50 -1.60 -17.74 16 11 C 0.51 15.45 7.69 87.23 0.67 16.12 16 12 O -0.52 -17.44 13.64 -3.38 -0.05 -17.48 16 13 C 0.51 16.45 7.89 87.23 0.69 17.14 16 14 O -0.53 -17.91 16.48 -3.31 -0.05 -17.96 16 15 N -0.68 -23.30 5.52 -468.26 -2.59 -25.89 16 16 C 0.12 4.17 6.15 85.64 0.53 4.70 16 17 C 0.43 19.76 7.85 87.66 0.69 20.45 16 18 O -0.63 -33.17 15.24 -3.06 -0.05 -33.22 16 19 N -0.56 -27.57 5.29 -306.99 -1.62 -29.19 16 20 C -0.34 -18.60 9.68 84.04 0.81 -17.79 16 21 H 0.08 4.95 7.16 -2.91 -0.02 4.93 16 22 C -0.01 -0.47 5.50 84.93 0.47 -0.01 16 23 N -0.91 -47.97 13.05 21.66 0.28 -47.69 16 24 Si 1.00 41.82 29.55 68.60 2.03 43.85 16 25 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 26 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 27 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 28 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 29 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 31 H 0.07 0.59 7.66 -2.39 -0.02 0.57 16 32 H 0.08 0.56 7.66 -2.39 -0.02 0.54 16 33 H 0.16 1.24 6.30 -2.91 -0.02 1.23 16 34 H 0.16 1.02 8.06 -2.91 -0.02 1.00 16 35 H 0.15 1.94 8.06 -2.91 -0.02 1.91 16 36 H 0.13 3.69 5.79 -2.91 -0.02 3.68 16 37 H 0.43 10.24 7.82 -92.71 -0.73 9.51 16 38 H 0.42 15.60 6.91 -92.71 -0.64 14.96 16 39 H 0.11 3.52 8.14 -2.38 -0.02 3.50 16 40 H 0.11 3.53 8.14 -2.39 -0.02 3.51 16 41 H 0.40 18.82 7.90 -92.71 -0.73 18.09 16 42 H 0.28 13.78 8.31 -92.71 -0.77 13.01 16 Total: -1.00 -68.95 368.73 0.71 -68.24 By element: Atomic # 1 Polarization: 47.87 SS G_CDS: -0.98 Total: 46.89 kcal Atomic # 6 Polarization: 31.05 SS G_CDS: 6.23 Total: 37.28 kcal Atomic # 7 Polarization: -114.98 SS G_CDS: -5.53 Total: -120.51 kcal Atomic # 8 Polarization: -74.71 SS G_CDS: -1.04 Total: -75.75 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.85 kcal Total: -68.95 0.71 -68.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357303884.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.187 kcal (2) G-P(sol) polarization free energy of solvation -68.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds