Wall clock time and date at job start Tue Mar 31 2020 18:19:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45197 * 109.46726 * 2 1 4 4 C 1.34678 * 116.99777 * 179.97438 * 3 2 1 5 5 O 1.21427 * 119.99629 * 0.02562 * 4 3 2 6 6 C 1.48061 * 119.99863 * 180.02562 * 4 3 2 7 7 C 1.40058 * 120.88910 * 0.02562 * 6 4 3 8 8 C 1.37946 * 119.17207 * 179.97438 * 7 6 4 9 9 N 1.31923 * 121.00404 * 359.97438 * 8 7 6 10 10 C 1.32317 * 121.95632 * 0.02562 * 9 8 7 11 11 N 1.39029 * 119.63709 * 179.97438 * 10 9 8 12 12 C 1.46497 * 120.00003 * 1.95001 * 11 10 9 13 13 C 1.53005 * 109.46639 * 183.31131 * 12 11 10 14 14 C 1.50697 * 115.54801 * 279.92215 * 13 12 11 15 15 H 1.08007 * 119.99755 * 144.26175 * 14 13 12 16 16 C 1.37875 * 120.00325 * 324.26465 * 14 13 12 17 17 N 1.31511 * 120.00015 * 337.97580 * 16 14 13 18 18 Si 1.86801 * 120.00021 * 157.98249 * 16 14 13 19 19 H 1.48496 * 109.47268 * 59.99857 * 18 16 14 20 20 H 1.48498 * 109.47022 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.46893 * 299.99800 * 18 16 14 22 22 C 1.53004 * 117.49524 * 134.22050 * 13 12 11 23 23 C 1.53004 * 117.50011 * 65.59786 * 13 12 11 24 24 C 1.39118 * 120.71566 * 359.73897 * 10 9 8 25 25 N 1.48021 * 120.53775 * 180.28505 * 24 10 9 26 26 O 1.21794 * 120.00243 * 271.94267 * 25 24 10 27 27 O 1.21805 * 119.99879 * 91.94378 * 25 24 10 28 28 H 1.09006 * 109.47249 * 59.99929 * 1 2 3 29 29 H 1.09003 * 109.46975 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47523 * 300.00082 * 1 2 3 31 31 H 1.09000 * 109.46843 * 119.99937 * 2 1 3 32 32 H 1.08999 * 109.47075 * 240.00128 * 2 1 3 33 33 H 1.07996 * 120.41209 * 359.95962 * 7 6 4 34 34 H 1.07999 * 119.49905 * 179.97438 * 8 7 6 35 35 H 0.96997 * 119.99330 * 181.95089 * 11 10 9 36 36 H 1.08999 * 109.46977 * 303.30434 * 12 11 10 37 37 H 1.08996 * 109.47403 * 63.31143 * 12 11 10 38 38 H 0.96997 * 120.00505 * 184.08993 * 17 16 14 39 39 H 1.08994 * 117.50151 * 359.97438 * 22 13 12 40 40 H 1.09004 * 117.49791 * 145.02320 * 22 13 12 41 41 H 1.08999 * 117.49737 * 214.97265 * 23 13 12 42 42 H 1.09000 * 117.49432 * 359.97424 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3491 1.5455 0.0005 5 8 4.0887 0.5825 0.0005 6 6 3.9149 2.9137 0.0011 7 6 3.0790 4.0375 0.0017 8 6 3.6442 5.2959 0.0028 9 7 4.9541 5.4525 0.0038 10 6 5.7827 4.4209 0.0034 11 7 7.1554 4.6417 0.0039 12 6 7.6772 6.0099 0.0483 13 6 9.2041 5.9765 -0.0440 14 6 9.9258 5.6551 1.2392 15 1 10.8314 5.0669 1.2166 16 6 9.4303 6.1118 2.4420 17 7 8.6217 7.1486 2.4689 18 14 9.9074 5.2579 4.0334 19 1 11.3811 5.3199 4.2059 20 1 9.2468 5.9370 5.1769 21 1 9.4742 3.8384 3.9827 22 6 9.8753 6.9593 -1.0056 23 6 9.8221 5.4691 -1.3485 24 6 5.2953 3.1179 0.0072 25 7 6.2259 1.9669 0.0130 26 8 6.6384 1.5119 -1.0388 27 8 6.5791 1.4746 1.0697 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 2.0054 3.9203 0.0011 34 1 3.0045 6.1661 0.0028 35 1 7.7674 3.8898 -0.0250 36 1 7.2749 6.5795 -0.7895 37 1 7.3800 6.4820 0.9846 38 1 8.3202 7.5067 3.3185 39 1 9.2291 7.6293 -1.5727 40 1 10.8392 7.3736 -0.7101 41 1 10.7510 4.9032 -1.2786 42 1 9.1408 5.1587 -2.1407 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362364930.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:53 Heat of formation + Delta-G solvation = -9.914059 kcal Electronic energy + Delta-G solvation = -29356.984124 eV Core-core repulsion = 25114.267390 eV Total energy + Delta-G solvation = -4242.716734 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.06151 -40.83036 -40.02773 -37.40263 -37.04097 -36.09150 -34.90088 -33.31740 -32.37261 -32.04197 -30.50178 -26.97577 -26.47021 -25.58982 -24.66486 -23.12281 -22.74998 -21.48919 -21.15799 -19.59029 -19.04199 -18.65449 -18.42522 -17.65303 -17.40869 -16.98367 -16.56660 -16.09302 -15.59633 -15.04414 -14.90741 -14.75858 -14.39663 -14.18946 -13.96393 -13.62070 -13.23519 -13.13166 -12.93864 -12.44071 -12.20248 -12.02182 -11.80642 -11.30353 -11.20796 -11.08223 -11.00116 -10.99058 -10.94685 -10.71401 -10.60616 -10.50318 -10.41721 -10.19222 -9.86779 -9.57929 -9.32895 -8.92619 -8.28564 -7.74714 -6.27564 -4.23753 0.00951 0.87576 0.89376 1.58562 2.01413 2.18244 3.16143 3.22503 3.28943 3.36376 3.43211 3.98444 4.17468 4.26227 4.46849 4.54057 4.56062 4.63973 4.79144 4.84793 4.88255 5.14107 5.32359 5.37090 5.37939 5.46491 5.54321 5.79912 5.92115 5.94602 6.14031 6.31564 6.43746 6.52573 6.55441 6.69333 6.87419 7.15339 7.19172 7.22338 7.34347 7.43846 7.78330 7.94044 7.98413 8.21102 8.69820 9.33639 10.75250 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.015138 B = 0.003490 C = 0.003401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.260067 B = 8021.522357 C = 8230.788290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.061 3.939 3 O -0.343 6.343 4 C 0.505 3.495 5 O -0.481 6.481 6 C 0.013 3.987 7 C -0.197 4.197 8 C 0.191 3.809 9 N -0.494 5.494 10 C 0.457 3.543 11 N -0.672 5.672 12 C 0.147 3.853 13 C 0.033 3.967 14 C -0.504 4.504 15 H 0.065 0.935 16 C 0.077 3.923 17 N -0.866 5.866 18 Si 0.885 3.115 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.270 1.270 22 C -0.186 4.186 23 C -0.210 4.210 24 C -0.126 4.126 25 N 0.038 4.962 26 O -0.141 6.141 27 O -0.130 6.130 28 H 0.068 0.932 29 H 0.082 0.918 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.162 0.838 34 H 0.181 0.819 35 H 0.410 0.590 36 H 0.046 0.954 37 H 0.126 0.874 38 H 0.267 0.733 39 H 0.067 0.933 40 H 0.083 0.917 41 H 0.080 0.920 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.688 -6.485 -5.132 19.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.012 4.012 3 O -0.260 6.260 4 C 0.347 3.653 5 O -0.368 6.368 6 C 0.003 3.997 7 C -0.221 4.221 8 C 0.027 3.973 9 N -0.214 5.214 10 C 0.215 3.785 11 N -0.293 5.293 12 C 0.026 3.974 13 C 0.032 3.968 14 C -0.540 4.540 15 H 0.084 0.916 16 C -0.128 4.128 17 N -0.501 5.501 18 Si 0.712 3.288 19 H -0.200 1.200 20 H -0.211 1.211 21 H -0.195 1.195 22 C -0.225 4.225 23 C -0.248 4.248 24 C -0.217 4.217 25 N 0.568 4.432 26 O -0.363 6.363 27 O -0.354 6.354 28 H 0.087 0.913 29 H 0.101 0.899 30 H 0.088 0.912 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.179 0.821 34 H 0.198 0.802 35 H 0.247 0.753 36 H 0.064 0.936 37 H 0.143 0.857 38 H 0.077 0.923 39 H 0.086 0.914 40 H 0.101 0.899 41 H 0.098 0.902 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -17.542 -5.078 -4.999 18.934 hybrid contribution 0.420 -1.915 0.790 2.114 sum -17.122 -6.994 -4.210 18.968 Atomic orbital electron populations 1.21819 0.92022 1.03282 1.03740 1.23183 0.95630 0.79156 1.03252 1.86500 1.22329 1.33287 1.83847 1.20884 0.81596 0.88949 0.73844 1.90974 1.60303 1.41895 1.43583 1.18768 0.89633 0.92374 0.98894 1.22062 1.01471 0.90970 1.07561 1.22926 0.89793 0.97094 0.87467 1.67589 1.04625 1.30125 1.19030 1.17874 0.87906 0.84690 0.88074 1.45517 1.00196 1.12564 1.71070 1.21582 0.93425 0.78152 1.04262 1.19151 0.89867 0.98451 0.89356 1.20450 1.10277 1.34461 0.88806 0.91638 1.24949 0.94650 0.93862 0.99300 1.69855 1.33768 1.19789 1.26707 0.86743 0.78967 0.80807 0.82310 1.19955 1.21072 1.19493 1.22947 1.02704 0.90844 1.05954 1.22923 1.02776 0.97876 1.01225 1.21148 0.89302 0.86537 1.24724 1.42966 0.99461 1.00311 1.00417 1.94517 1.57309 1.63209 1.21233 1.94562 1.59870 1.60548 1.20464 0.91269 0.89887 0.91233 0.90685 0.90723 0.82082 0.80228 0.75257 0.93584 0.85658 0.92333 0.91441 0.89859 0.90178 0.91301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 10.29 37.16 0.38 -0.46 16 2 C 0.06 0.54 6.19 37.16 0.23 0.77 16 3 O -0.34 -3.88 9.57 -40.43 -0.39 -4.26 16 4 C 0.51 7.46 7.92 34.76 0.28 7.73 16 5 O -0.48 -8.60 14.51 -24.33 -0.35 -8.95 16 6 C 0.01 0.20 5.90 -104.70 -0.62 -0.42 16 7 C -0.20 -2.15 9.70 -39.01 -0.38 -2.53 16 8 C 0.19 2.18 11.16 -17.62 -0.20 1.98 16 9 N -0.49 -8.10 9.53 -12.48 -0.12 -8.22 16 10 C 0.46 8.51 7.48 -155.07 -1.16 7.35 16 11 N -0.67 -13.91 5.66 -60.44 -0.34 -14.25 16 12 C 0.15 3.26 5.34 -4.04 -0.02 3.24 16 13 C 0.03 0.76 1.73 -155.65 -0.27 0.50 16 14 C -0.50 -13.14 8.98 -34.44 -0.31 -13.44 16 15 H 0.07 1.73 7.91 -52.48 -0.42 1.31 16 16 C 0.08 2.02 5.03 -17.82 -0.09 1.93 16 17 N -0.87 -22.95 11.14 55.43 0.62 -22.33 16 18 Si 0.89 20.68 29.59 -169.99 -5.03 15.65 16 19 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 20 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 22 C -0.19 -4.02 9.88 -26.73 -0.26 -4.29 16 23 C -0.21 -4.40 9.92 -26.73 -0.27 -4.66 16 24 C -0.13 -2.28 6.22 -79.13 -0.49 -2.77 16 25 N 0.04 0.77 1.74 34.36 0.06 0.83 16 26 O -0.14 -2.89 19.09 -31.57 -0.60 -3.49 16 27 O -0.13 -2.80 18.93 -32.88 -0.62 -3.42 16 28 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.16 1.19 7.71 -52.49 -0.40 0.78 16 34 H 0.18 1.24 8.06 -52.49 -0.42 0.82 16 35 H 0.41 8.79 7.71 -40.82 -0.31 8.48 16 36 H 0.05 0.98 7.95 -51.93 -0.41 0.57 16 37 H 0.13 3.12 5.43 -51.93 -0.28 2.84 16 38 H 0.27 6.80 8.32 -40.82 -0.34 6.46 16 39 H 0.07 1.36 8.08 -51.93 -0.42 0.94 16 40 H 0.08 1.83 8.14 -51.93 -0.42 1.41 16 41 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 42 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 LS Contribution 373.12 15.07 5.62 5.62 Total: -1.00 -30.54 373.12 -9.52 -40.06 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -5.19 Total: 7.85 kcal Atomic # 6 Polarization: -1.89 SS G_CDS: -3.18 Total: -5.07 kcal Atomic # 7 Polarization: -44.19 SS G_CDS: 0.22 Total: -43.98 kcal Atomic # 8 Polarization: -18.17 SS G_CDS: -1.97 Total: -20.13 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.03 Total: 15.65 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.54 -9.52 -40.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362364930.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.146 kcal (2) G-P(sol) polarization free energy of solvation -30.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds