Wall clock time and date at job start Tue Mar 31 2020 18:19:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45197 * 109.46726 * 2 1 4 4 C 1.34678 * 116.99777 * 179.97438 * 3 2 1 5 5 O 1.21427 * 119.99629 * 0.02562 * 4 3 2 6 6 C 1.48061 * 119.99863 * 180.02562 * 4 3 2 7 7 C 1.40058 * 120.88910 * 0.02562 * 6 4 3 8 8 C 1.37946 * 119.17207 * 179.97438 * 7 6 4 9 9 N 1.31923 * 121.00404 * 359.97438 * 8 7 6 10 10 C 1.32317 * 121.95632 * 0.02562 * 9 8 7 11 11 N 1.39029 * 119.63709 * 179.97438 * 10 9 8 12 12 C 1.46497 * 120.00003 * 1.95001 * 11 10 9 13 13 C 1.53005 * 109.46639 * 183.31131 * 12 11 10 14 14 C 1.50697 * 115.54801 * 279.92215 * 13 12 11 15 15 H 1.08007 * 119.99755 * 144.26175 * 14 13 12 16 16 C 1.37875 * 120.00325 * 324.26465 * 14 13 12 17 17 N 1.31511 * 120.00015 * 337.97580 * 16 14 13 18 18 Si 1.86801 * 120.00021 * 157.98249 * 16 14 13 19 19 H 1.48496 * 109.47268 * 59.99857 * 18 16 14 20 20 H 1.48498 * 109.47022 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.46893 * 299.99800 * 18 16 14 22 22 C 1.53004 * 117.49524 * 134.22050 * 13 12 11 23 23 C 1.53004 * 117.50011 * 65.59786 * 13 12 11 24 24 C 1.39118 * 120.71566 * 359.73897 * 10 9 8 25 25 N 1.48021 * 120.53775 * 180.28505 * 24 10 9 26 26 O 1.21794 * 120.00243 * 271.94267 * 25 24 10 27 27 O 1.21805 * 119.99879 * 91.94378 * 25 24 10 28 28 H 1.09006 * 109.47249 * 59.99929 * 1 2 3 29 29 H 1.09003 * 109.46975 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47523 * 300.00082 * 1 2 3 31 31 H 1.09000 * 109.46843 * 119.99937 * 2 1 3 32 32 H 1.08999 * 109.47075 * 240.00128 * 2 1 3 33 33 H 1.07996 * 120.41209 * 359.95962 * 7 6 4 34 34 H 1.07999 * 119.49905 * 179.97438 * 8 7 6 35 35 H 0.96997 * 119.99330 * 181.95089 * 11 10 9 36 36 H 1.08999 * 109.46977 * 303.30434 * 12 11 10 37 37 H 1.08996 * 109.47403 * 63.31143 * 12 11 10 38 38 H 0.96997 * 120.00505 * 184.08993 * 17 16 14 39 39 H 1.08994 * 117.50151 * 359.97438 * 22 13 12 40 40 H 1.09004 * 117.49791 * 145.02320 * 22 13 12 41 41 H 1.08999 * 117.49737 * 214.97265 * 23 13 12 42 42 H 1.09000 * 117.49432 * 359.97424 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3491 1.5455 0.0005 5 8 4.0887 0.5825 0.0005 6 6 3.9149 2.9137 0.0011 7 6 3.0790 4.0375 0.0017 8 6 3.6442 5.2959 0.0028 9 7 4.9541 5.4525 0.0038 10 6 5.7827 4.4209 0.0034 11 7 7.1554 4.6417 0.0039 12 6 7.6772 6.0099 0.0483 13 6 9.2041 5.9765 -0.0440 14 6 9.9258 5.6551 1.2392 15 1 10.8314 5.0669 1.2166 16 6 9.4303 6.1118 2.4420 17 7 8.6217 7.1486 2.4689 18 14 9.9074 5.2579 4.0334 19 1 11.3811 5.3199 4.2059 20 1 9.2468 5.9370 5.1769 21 1 9.4742 3.8384 3.9827 22 6 9.8753 6.9593 -1.0056 23 6 9.8221 5.4691 -1.3485 24 6 5.2953 3.1179 0.0072 25 7 6.2259 1.9669 0.0130 26 8 6.6384 1.5119 -1.0388 27 8 6.5791 1.4746 1.0697 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 2.0054 3.9203 0.0011 34 1 3.0045 6.1661 0.0028 35 1 7.7674 3.8898 -0.0250 36 1 7.2749 6.5795 -0.7895 37 1 7.3800 6.4820 0.9846 38 1 8.3202 7.5067 3.3185 39 1 9.2291 7.6293 -1.5727 40 1 10.8392 7.3736 -0.7101 41 1 10.7510 4.9032 -1.2786 42 1 9.1408 5.1587 -2.1407 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362364930.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:52 Heat of formation + Delta-G solvation = -26.004201 kcal Electronic energy + Delta-G solvation = -29357.681845 eV Core-core repulsion = 25114.267390 eV Total energy + Delta-G solvation = -4243.414455 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.47872 -42.01441 -41.22596 -39.04479 -38.09427 -37.65369 -36.33280 -34.51332 -34.33465 -32.75711 -31.76026 -28.27682 -28.06825 -27.36718 -25.92725 -24.10541 -23.87889 -23.04064 -22.42062 -21.27752 -20.51387 -19.96783 -19.87313 -19.00479 -18.58480 -18.25111 -17.94400 -17.33662 -17.04905 -16.81563 -16.19014 -15.87399 -15.75308 -15.40182 -15.21208 -14.97921 -14.65110 -14.16115 -13.88763 -13.71310 -13.63599 -13.13564 -12.95503 -12.89800 -12.88867 -12.63783 -12.48999 -12.40271 -12.34174 -12.32996 -12.17442 -11.81570 -11.67993 -11.61248 -11.40662 -11.20268 -11.00266 -10.72458 -10.13998 -9.18501 -8.24530 -6.24663 -1.14974 -0.68964 -0.26636 0.21352 0.99481 1.04763 1.32802 1.38983 1.45707 1.79546 2.29393 2.32672 2.85971 2.97110 3.05946 3.21921 3.46138 3.62392 3.81506 3.92090 3.96227 4.08400 4.17264 4.26789 4.40426 4.57691 4.59944 4.65384 4.69496 4.84650 4.89849 4.89954 4.95687 4.98553 5.13967 5.19792 5.26407 5.46788 5.49246 5.76823 5.85071 5.91662 6.15287 6.29083 6.33202 6.62187 6.72492 7.33037 8.76649 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.015138 B = 0.003490 C = 0.003401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.260067 B = 8021.522357 C = 8230.788290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.051 3.949 3 O -0.328 6.328 4 C 0.508 3.492 5 O -0.522 6.522 6 C -0.006 4.006 7 C -0.148 4.148 8 C 0.203 3.797 9 N -0.513 5.513 10 C 0.443 3.557 11 N -0.692 5.692 12 C 0.169 3.831 13 C 0.004 3.996 14 C -0.522 4.522 15 H 0.051 0.949 16 C 0.044 3.956 17 N -0.881 5.881 18 Si 0.931 3.069 19 H -0.270 1.270 20 H -0.278 1.278 21 H -0.282 1.282 22 C -0.181 4.181 23 C -0.192 4.192 24 C -0.153 4.153 25 N 0.044 4.956 26 O -0.144 6.144 27 O -0.173 6.173 28 H 0.076 0.924 29 H 0.102 0.898 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.212 0.788 34 H 0.238 0.762 35 H 0.401 0.599 36 H 0.050 0.950 37 H 0.097 0.903 38 H 0.267 0.733 39 H 0.084 0.916 40 H 0.075 0.925 41 H 0.078 0.922 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.284 -5.639 -5.739 22.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.022 4.022 3 O -0.243 6.243 4 C 0.352 3.648 5 O -0.412 6.412 6 C -0.016 4.016 7 C -0.171 4.171 8 C 0.040 3.960 9 N -0.232 5.232 10 C 0.204 3.796 11 N -0.315 5.315 12 C 0.047 3.953 13 C 0.004 3.996 14 C -0.558 4.558 15 H 0.069 0.931 16 C -0.159 4.159 17 N -0.517 5.517 18 Si 0.757 3.243 19 H -0.195 1.195 20 H -0.203 1.203 21 H -0.208 1.208 22 C -0.219 4.219 23 C -0.229 4.229 24 C -0.244 4.244 25 N 0.571 4.429 26 O -0.370 6.370 27 O -0.390 6.390 28 H 0.095 0.905 29 H 0.120 0.880 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.229 0.771 34 H 0.254 0.746 35 H 0.236 0.764 36 H 0.069 0.931 37 H 0.115 0.885 38 H 0.077 0.923 39 H 0.103 0.897 40 H 0.094 0.906 41 H 0.097 0.903 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -21.185 -4.233 -5.550 22.306 hybrid contribution 1.278 -2.160 0.895 2.664 sum -19.908 -6.393 -4.655 21.421 Atomic orbital electron populations 1.21846 0.88948 1.04793 1.04381 1.23540 0.97845 0.77852 1.02950 1.86499 1.20039 1.34891 1.82912 1.20953 0.82460 0.88465 0.72927 1.90963 1.61441 1.43102 1.45692 1.19075 0.88684 0.93872 0.99984 1.22739 1.03272 0.89169 1.01926 1.23995 0.88421 0.99286 0.84298 1.67680 1.06682 1.29530 1.19342 1.17964 0.87439 0.85333 0.88860 1.45309 1.01231 1.11299 1.73686 1.21102 0.92437 0.79010 1.02781 1.19225 0.90762 1.00428 0.89222 1.20643 1.10256 1.34378 0.90561 0.93080 1.25415 0.95004 0.94259 1.01200 1.69931 1.34434 1.20348 1.27013 0.86033 0.78895 0.79231 0.80182 1.19461 1.20310 1.20797 1.22934 1.02325 0.91425 1.05218 1.22880 1.02557 0.97365 1.00129 1.21259 0.90019 0.85110 1.28026 1.43290 0.99248 1.00603 0.99764 1.94466 1.57442 1.63775 1.21317 1.94538 1.61456 1.62195 1.20844 0.90468 0.87966 0.90653 0.91268 0.90995 0.77074 0.74572 0.76394 0.93134 0.88494 0.92346 0.89737 0.90646 0.90325 0.89770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 10.29 71.98 0.74 -0.37 16 2 C 0.05 0.80 6.19 71.98 0.45 1.25 16 3 O -0.33 -6.53 9.57 -55.87 -0.53 -7.07 16 4 C 0.51 14.42 7.92 70.43 0.56 14.98 16 5 O -0.52 -19.01 14.51 24.97 0.36 -18.65 16 6 C -0.01 -0.17 5.90 -19.91 -0.12 -0.29 16 7 C -0.15 -2.52 9.70 22.64 0.22 -2.30 16 8 C 0.20 3.66 11.16 84.61 0.94 4.60 16 9 N -0.51 -15.70 9.53 -193.40 -1.84 -17.54 16 10 C 0.44 16.44 7.48 133.07 0.99 17.43 16 11 N -0.69 -29.38 5.66 -345.13 -1.95 -31.33 16 12 C 0.17 7.59 5.34 86.38 0.46 8.05 16 13 C 0.00 0.21 1.73 -52.92 -0.09 0.12 16 14 C -0.52 -27.97 8.98 25.60 0.23 -27.74 16 15 H 0.05 2.80 7.91 -2.91 -0.02 2.77 16 16 C 0.04 2.35 5.03 84.65 0.43 2.78 16 17 N -0.88 -47.37 11.14 21.45 0.24 -47.13 16 18 Si 0.93 43.38 29.59 68.60 2.03 45.41 16 19 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 20 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 21 H -0.28 -13.61 7.11 99.48 0.71 -12.90 16 22 C -0.18 -7.77 9.88 30.60 0.30 -7.47 16 23 C -0.19 -8.01 9.92 30.60 0.30 -7.71 16 24 C -0.15 -5.57 6.22 36.90 0.23 -5.34 16 25 N 0.04 1.86 1.74 -45.21 -0.08 1.78 16 26 O -0.14 -6.18 19.09 20.91 0.40 -5.78 16 27 O -0.17 -7.95 18.93 22.14 0.42 -7.53 16 28 H 0.08 0.51 8.14 -2.38 -0.02 0.49 16 29 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.07 1.18 8.14 -2.39 -0.02 1.17 16 33 H 0.21 1.54 7.71 -2.91 -0.02 1.51 16 34 H 0.24 1.54 8.06 -2.91 -0.02 1.52 16 35 H 0.40 18.04 7.71 -92.71 -0.71 17.32 16 36 H 0.05 2.15 7.95 -2.39 -0.02 2.13 16 37 H 0.10 4.92 5.43 -2.39 -0.01 4.91 16 38 H 0.27 13.74 8.32 -92.71 -0.77 12.97 16 39 H 0.08 3.31 8.08 -2.39 -0.02 3.29 16 40 H 0.07 3.32 8.14 -2.38 -0.02 3.30 16 41 H 0.08 3.27 8.14 -2.39 -0.02 3.25 16 42 H 0.08 3.24 8.14 -2.39 -0.02 3.22 16 Total: -1.00 -71.20 373.12 5.05 -66.15 By element: Atomic # 1 Polarization: 23.35 SS G_CDS: 0.36 Total: 23.71 kcal Atomic # 6 Polarization: -7.66 SS G_CDS: 5.65 Total: -2.01 kcal Atomic # 7 Polarization: -90.59 SS G_CDS: -3.64 Total: -94.22 kcal Atomic # 8 Polarization: -39.68 SS G_CDS: 0.65 Total: -39.03 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Total: -71.20 5.05 -66.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362364930.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.149 kcal (2) G-P(sol) polarization free energy of solvation -71.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds