Wall clock time and date at job start Tue Mar 31 2020 19:07:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35986 * 116.99618 * 2 1 4 4 C 1.38535 * 120.08348 * 0.02562 * 3 2 1 5 5 C 1.38246 * 120.01609 * 179.97438 * 4 3 2 6 6 C 1.38268 * 120.17847 * 0.02791 * 5 4 3 7 7 N 1.48027 * 119.92538 * 180.02562 * 6 5 4 8 8 O 1.21802 * 119.99276 * 0.02562 * 7 6 5 9 9 O 1.21797 * 120.00071 * 179.97438 * 7 6 5 10 10 C 1.38210 * 120.15941 * 359.74325 * 6 5 4 11 11 C 1.38714 * 119.98381 * 0.48427 * 10 6 5 12 12 N 1.40160 * 120.08685 * 179.78850 * 11 10 6 13 13 C 1.34773 * 120.00410 * 332.05660 * 12 11 10 14 14 O 1.21590 * 119.99914 * 4.40096 * 13 12 11 15 15 N 1.34780 * 120.00155 * 184.39344 * 13 12 11 16 16 C 1.46499 * 120.00119 * 180.02562 * 15 13 12 17 17 C 1.52996 * 109.47501 * 184.73430 * 16 15 13 18 18 C 1.50702 * 115.54566 * 303.72078 * 17 16 15 19 19 H 1.08003 * 120.00072 * 99.33264 * 18 17 16 20 20 C 1.37881 * 119.99765 * 279.05483 * 18 17 16 21 21 N 1.31513 * 120.00098 * 355.35987 * 20 18 17 22 22 Si 1.86795 * 120.00006 * 175.36726 * 20 18 17 23 23 H 1.48492 * 109.47533 * 59.99655 * 22 20 18 24 24 H 1.48498 * 109.47084 * 180.02562 * 22 20 18 25 25 H 1.48509 * 109.47024 * 299.99793 * 22 20 18 26 26 C 1.53001 * 117.52139 * 89.41711 * 17 16 15 27 27 C 1.52997 * 117.50418 * 158.04937 * 17 16 15 28 28 H 1.09002 * 109.47177 * 60.00192 * 1 2 3 29 29 H 1.08997 * 109.46655 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.46944 * 299.99681 * 1 2 3 31 31 H 1.08008 * 119.99496 * 359.97438 * 4 3 2 32 32 H 1.08002 * 119.91469 * 180.02562 * 5 4 3 33 33 H 1.08000 * 120.01161 * 180.27691 * 10 6 5 34 34 H 0.97009 * 119.99564 * 152.05895 * 12 11 10 35 35 H 0.97002 * 119.99762 * 0.02562 * 15 13 12 36 36 H 1.08996 * 109.47202 * 64.73093 * 16 15 13 37 37 H 1.09007 * 109.47219 * 304.73420 * 16 15 13 38 38 H 0.96995 * 120.00197 * 185.00420 * 21 20 18 39 39 H 1.08998 * 117.50002 * 214.97768 * 26 17 16 40 40 H 1.09000 * 117.49894 * 359.97438 * 26 17 16 41 41 H 1.09000 * 117.49651 * 359.97071 * 27 17 16 42 42 H 1.09000 * 117.50025 * 144.97782 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 1.2934 2.3746 0.0005 5 6 1.9224 3.6057 0.0011 6 6 3.3030 3.6808 0.0005 7 7 3.9707 5.0019 0.0016 8 8 3.3038 6.0212 0.0036 9 8 5.1868 5.0697 0.0016 10 6 4.0613 2.5253 0.0047 11 6 3.4372 1.2865 -0.0006 12 7 4.2041 0.1133 -0.0008 13 6 5.4378 0.1147 -0.5433 14 8 5.9173 1.1513 -0.9604 15 7 6.1400 -1.0328 -0.6234 16 6 7.4813 -1.0312 -1.2126 17 6 8.0062 -2.4662 -1.2899 18 6 8.0404 -3.2170 0.0164 19 1 7.2512 -3.9129 0.2600 20 6 9.0820 -3.0195 0.8979 21 7 10.0913 -2.2467 0.5608 22 14 9.0598 -3.8499 2.5710 23 1 9.0158 -5.3234 2.3918 24 1 10.2845 -3.4787 3.3242 25 1 7.8609 -3.4073 3.3274 26 6 7.6941 -3.2660 -2.5563 27 6 9.1153 -2.7594 -2.3023 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 0.2147 2.3195 0.0005 32 1 1.3338 4.5112 0.0019 33 1 5.1395 2.5868 0.0088 34 1 3.8468 -0.6997 0.3896 35 1 5.7573 -1.8599 -0.2909 36 1 8.1495 -0.4328 -0.5934 37 1 7.4372 -0.6060 -2.2154 38 1 10.8576 -2.1652 1.1498 39 1 7.5134 -4.3351 -2.4447 40 1 7.1142 -2.7700 -3.3347 41 1 9.4706 -1.9299 -2.9137 42 1 9.8697 -3.4949 -2.0235 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431189780.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:07:13 Heat of formation + Delta-G solvation = -8.404627 kcal Electronic energy + Delta-G solvation = -28540.466386 eV Core-core repulsion = 24297.815106 eV Total energy + Delta-G solvation = -4242.651281 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.136 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.12896 -41.07413 -39.66324 -37.88448 -36.86321 -36.44490 -34.84975 -33.59392 -32.06344 -31.35660 -30.22635 -28.16310 -26.38348 -25.98863 -25.28438 -23.31231 -22.27508 -21.26032 -20.65481 -19.59053 -19.45076 -18.69180 -18.57651 -17.89906 -17.42625 -17.04554 -16.44627 -16.19570 -16.05455 -15.25418 -14.76326 -14.71840 -14.51771 -14.27842 -14.03768 -13.76638 -13.36896 -13.25020 -12.77993 -12.68445 -12.09322 -11.89983 -11.78791 -11.68366 -11.46955 -11.14956 -11.06515 -11.03297 -11.03062 -10.78676 -10.60049 -10.30136 -9.89811 -9.56836 -9.33479 -9.11662 -8.65367 -8.51912 -8.29293 -8.03708 -6.14785 -4.25553 -0.15136 0.71264 1.31197 1.45405 2.52149 2.71444 2.97907 3.20677 3.27699 3.28644 3.49946 4.10878 4.24146 4.28236 4.40403 4.50986 4.61971 4.64736 4.79321 4.99159 5.12643 5.16728 5.26779 5.28732 5.48387 5.59064 5.90456 5.94092 6.24771 6.31927 6.40650 6.41565 6.46680 6.63209 6.71120 6.75276 7.01145 7.06037 7.18993 7.30697 7.45862 7.73656 7.74155 8.25223 8.29916 8.75634 8.80723 9.42356 10.92497 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.012006 B = 0.003082 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2331.616710 B = 9084.107259 C = 9882.044650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.305 6.305 3 C 0.142 3.858 4 C -0.189 4.189 5 C -0.042 4.042 6 C -0.060 4.060 7 N 0.035 4.965 8 O -0.175 6.175 9 O -0.151 6.151 10 C -0.040 4.040 11 C 0.160 3.840 12 N -0.679 5.679 13 C 0.695 3.305 14 O -0.583 6.583 15 N -0.703 5.703 16 C 0.178 3.822 17 C 0.026 3.974 18 C -0.506 4.506 19 H 0.060 0.940 20 C 0.076 3.924 21 N -0.871 5.871 22 Si 0.891 3.109 23 H -0.277 1.277 24 H -0.286 1.286 25 H -0.277 1.277 26 C -0.210 4.210 27 C -0.145 4.145 28 H 0.061 0.939 29 H 0.107 0.893 30 H 0.061 0.939 31 H 0.153 0.847 32 H 0.154 0.846 33 H 0.192 0.808 34 H 0.415 0.585 35 H 0.402 0.598 36 H 0.071 0.929 37 H 0.042 0.958 38 H 0.264 0.736 39 H 0.077 0.923 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.758 4.500 -0.300 21.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.217 6.217 3 C 0.092 3.908 4 C -0.209 4.209 5 C -0.063 4.063 6 C -0.144 4.144 7 N 0.553 4.447 8 O -0.387 6.387 9 O -0.370 6.370 10 C -0.062 4.062 11 C 0.061 3.939 12 N -0.326 5.326 13 C 0.395 3.605 14 O -0.462 6.462 15 N -0.355 5.355 16 C 0.055 3.945 17 C 0.025 3.975 18 C -0.543 4.543 19 H 0.078 0.922 20 C -0.129 4.129 21 N -0.506 5.506 22 Si 0.718 3.282 23 H -0.203 1.203 24 H -0.212 1.212 25 H -0.202 1.202 26 C -0.247 4.247 27 C -0.183 4.183 28 H 0.080 0.920 29 H 0.125 0.875 30 H 0.080 0.920 31 H 0.171 0.829 32 H 0.171 0.829 33 H 0.209 0.791 34 H 0.252 0.748 35 H 0.237 0.763 36 H 0.090 0.910 37 H 0.060 0.940 38 H 0.073 0.927 39 H 0.096 0.904 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -20.292 4.624 -0.624 20.822 hybrid contribution -0.330 -0.847 1.251 1.546 sum -20.622 3.777 0.626 20.974 Atomic orbital electron populations 1.23221 0.77156 1.04872 1.01843 1.86113 1.22382 1.25558 1.87682 1.19023 0.90443 0.85567 0.95778 1.20940 1.00747 0.90142 1.09109 1.20701 0.91461 0.99386 0.94726 1.20785 0.92765 0.83122 1.17725 1.43474 1.01178 1.02666 0.97335 1.94488 1.65251 1.24697 1.54277 1.94605 0.95565 1.93832 1.52955 1.21403 1.04438 0.87584 0.92786 1.16468 0.86286 0.86728 1.04445 1.42526 1.16347 1.11558 1.62189 1.16052 0.79945 0.85378 0.79125 1.90847 1.69602 1.30847 1.54860 1.45191 1.18590 1.08115 1.63587 1.20938 0.79579 0.98439 0.95520 1.19013 0.98318 0.90532 0.89632 1.20284 1.09041 1.24779 1.00236 0.92232 1.24984 0.95461 0.94429 0.98011 1.69956 1.06634 1.36691 1.37318 0.86696 0.77578 0.79728 0.84191 1.20274 1.21202 1.20219 1.23018 1.00399 0.99617 1.01714 1.22491 0.91047 1.01864 1.02946 0.92015 0.87456 0.92023 0.82945 0.82851 0.79138 0.74817 0.76282 0.91042 0.93978 0.92652 0.90399 0.91651 0.91652 0.89620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.10 9.81 101.05 0.99 1.09 16 2 O -0.31 -2.60 9.95 -19.70 -0.20 -2.80 16 3 C 0.14 1.43 6.70 -39.08 -0.26 1.17 16 4 C -0.19 -1.53 9.04 -39.47 -0.36 -1.88 16 5 C -0.04 -0.42 9.55 -39.57 -0.38 -0.80 16 6 C -0.06 -0.81 6.85 -79.94 -0.55 -1.36 16 7 N 0.04 0.55 4.45 33.97 0.15 0.71 16 8 O -0.17 -2.65 18.44 -29.46 -0.54 -3.20 16 9 O -0.15 -2.69 18.44 -29.46 -0.54 -3.23 16 10 C -0.04 -0.61 8.27 -39.42 -0.33 -0.93 16 11 C 0.16 2.12 6.44 -83.48 -0.54 1.58 16 12 N -0.68 -9.40 5.27 -14.10 -0.07 -9.47 16 13 C 0.69 12.42 8.45 -86.92 -0.73 11.69 16 14 O -0.58 -12.28 13.37 5.29 0.07 -12.21 16 15 N -0.70 -12.94 5.43 -65.23 -0.35 -13.29 16 16 C 0.18 3.86 5.55 -4.04 -0.02 3.83 16 17 C 0.03 0.58 1.53 -155.66 -0.24 0.34 16 18 C -0.51 -12.35 8.14 -34.44 -0.28 -12.64 16 19 H 0.06 1.42 7.82 -52.48 -0.41 1.01 16 20 C 0.08 1.94 5.44 -17.82 -0.10 1.84 16 21 N -0.87 -23.41 12.85 55.43 0.71 -22.70 16 22 Si 0.89 19.84 29.54 -169.99 -5.02 14.82 16 23 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 24 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 25 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 26 C -0.21 -4.21 9.93 -26.73 -0.27 -4.48 16 27 C -0.15 -3.21 9.42 -26.73 -0.25 -3.46 16 28 H 0.06 0.20 7.66 -51.93 -0.40 -0.20 16 29 H 0.11 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.18 7.66 -51.93 -0.40 -0.22 16 31 H 0.15 0.67 6.30 -52.48 -0.33 0.34 16 32 H 0.15 1.20 7.60 -52.49 -0.40 0.80 16 33 H 0.19 3.43 5.23 -52.49 -0.27 3.16 16 34 H 0.42 4.67 8.42 -40.82 -0.34 4.32 16 35 H 0.40 6.73 8.03 -40.82 -0.33 6.40 16 36 H 0.07 1.77 8.14 -51.93 -0.42 1.35 16 37 H 0.04 0.90 8.10 -51.93 -0.42 0.48 16 38 H 0.26 6.88 8.32 -40.82 -0.34 6.54 16 39 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 40 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 41 H 0.06 1.38 8.14 -51.93 -0.42 0.95 16 42 H 0.09 2.02 8.14 -51.93 -0.42 1.60 16 LS Contribution 368.16 15.07 5.55 5.55 Total: -1.00 -30.49 368.16 -8.53 -39.02 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: -4.97 Total: 10.81 kcal Atomic # 6 Polarization: -0.69 SS G_CDS: -3.30 Total: -4.00 kcal Atomic # 7 Polarization: -45.19 SS G_CDS: 0.44 Total: -44.76 kcal Atomic # 8 Polarization: -20.23 SS G_CDS: -1.21 Total: -21.44 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -5.02 Total: 14.82 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.49 -8.53 -39.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431189780.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.614 kcal (2) G-P(sol) polarization free energy of solvation -30.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds