Wall clock time and date at job start Tue Mar 31 2020 19:32:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34232 * 116.99842 * 2 1 4 4 O 1.20821 * 119.99966 * 0.02562 * 3 2 1 5 5 C 1.50704 * 120.00021 * 179.97438 * 3 2 1 6 6 N 1.46491 * 109.47197 * 180.02562 * 5 3 2 7 7 C 1.37095 * 120.00027 * 271.40081 * 6 5 3 8 8 H 1.08009 * 119.99994 * 144.31236 * 7 6 5 9 9 C 1.38954 * 119.99982 * 324.30735 * 7 6 5 10 10 N 1.31412 * 119.99875 * 161.31876 * 9 7 6 11 11 Si 1.86795 * 120.00069 * 341.32452 * 9 7 6 12 12 H 1.48495 * 109.47171 * 95.37378 * 11 9 7 13 13 H 1.48493 * 109.47138 * 215.38104 * 11 9 7 14 14 H 1.48507 * 109.46770 * 335.37584 * 11 9 7 15 15 C 1.34779 * 120.00013 * 91.39494 * 6 5 3 16 16 O 1.21288 * 119.99916 * 354.44162 * 15 6 5 17 17 C 1.50704 * 120.00060 * 174.43539 * 15 6 5 18 18 C 1.52997 * 115.54932 * 72.29568 * 17 15 6 19 19 C 1.50698 * 109.47185 * 40.68819 * 18 17 15 20 20 C 1.38245 * 119.97430 * 81.73652 * 19 18 17 21 21 C 1.38200 * 120.02891 * 180.02562 * 20 19 18 22 22 C 1.38462 * 119.96996 * 0.24025 * 21 20 19 23 23 F 1.35103 * 120.02283 * 179.72999 * 22 21 20 24 24 C 1.38460 * 119.95011 * 359.48706 * 22 21 20 25 25 C 1.38201 * 119.97461 * 0.53131 * 24 22 21 26 26 C 1.53003 * 117.51884 * 218.00052 * 17 15 6 27 27 C 1.53006 * 60.00104 * 107.48021 * 26 17 15 28 28 H 1.08998 * 109.47171 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47160 * 299.99707 * 1 2 3 30 30 H 1.09000 * 109.47416 * 59.99818 * 1 2 3 31 31 H 1.09003 * 109.46639 * 60.00043 * 5 3 2 32 32 H 1.09002 * 109.46972 * 300.00413 * 5 3 2 33 33 H 0.96998 * 119.99478 * 185.01428 * 10 9 7 34 34 H 1.09002 * 109.47185 * 280.68784 * 18 17 15 35 35 H 1.08995 * 109.47063 * 160.68934 * 18 17 15 36 36 H 1.08002 * 119.98648 * 0.03006 * 20 19 18 37 37 H 1.07995 * 120.01733 * 179.97438 * 21 20 19 38 38 H 1.08003 * 120.01650 * 180.25691 * 24 22 21 39 39 H 1.07999 * 119.98920 * 179.74267 * 25 24 22 40 40 H 1.09002 * 117.49741 * 214.96795 * 26 17 15 41 41 H 1.08994 * 117.49886 * 359.97438 * 26 17 15 42 42 H 1.08996 * 117.49860 * 252.51061 * 27 26 17 43 43 H 1.09001 * 117.51572 * 107.47999 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2750 0.0006 6 7 3.9816 2.6798 0.0011 7 6 4.1486 3.3456 -1.1856 8 1 3.8865 4.3908 -1.2599 9 6 4.6550 2.6759 -2.2928 10 7 4.4807 3.1719 -3.4971 11 14 5.5834 1.0705 -2.0692 12 1 4.6520 -0.0704 -2.2583 13 1 6.6773 0.9878 -3.0701 14 1 6.1592 1.0181 -0.7013 15 6 4.1995 3.3177 1.1682 16 8 3.9553 2.7615 2.2180 17 6 4.7466 4.7219 1.1687 18 6 3.7710 5.8104 0.7171 19 6 2.4060 5.5314 1.2916 20 6 2.1140 5.9040 2.5905 21 6 0.8627 5.6482 3.1186 22 6 -0.0969 5.0139 2.3479 23 9 -1.3186 4.7585 2.8650 24 6 0.1949 4.6463 1.0453 25 6 1.4469 4.9028 0.5194 26 6 5.7569 5.0865 2.2584 27 6 6.2234 4.9048 0.8126 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 3.9563 0.7806 -0.8892 32 1 3.9557 0.7810 0.8908 33 1 4.7698 2.6696 -4.2750 34 1 3.7126 5.8172 -0.3713 35 1 4.1215 6.7809 1.0682 36 1 2.8639 6.3953 3.1927 37 1 0.6349 5.9390 4.1334 38 1 -0.5542 4.1552 0.4418 39 1 1.6761 4.6123 -0.4952 40 1 5.7265 6.1019 2.6535 41 1 6.0257 4.3108 2.9754 42 1 6.7992 4.0095 0.5783 43 1 6.4997 5.8005 0.2562 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000445834119.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:14 Heat of formation + Delta-G solvation = -88.992828 kcal Electronic energy + Delta-G solvation = -31013.452442 eV Core-core repulsion = 26747.386633 eV Total energy + Delta-G solvation = -4266.065809 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.137 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -48.48961 -40.17713 -39.39883 -38.21946 -36.41654 -35.63148 -34.85909 -32.06109 -31.57083 -30.59432 -29.04199 -26.86441 -26.23783 -25.11222 -22.60190 -22.32826 -21.87009 -21.15972 -20.51402 -18.63196 -17.54751 -17.31502 -16.95934 -16.45968 -15.92526 -15.79893 -15.52424 -15.25062 -15.19252 -14.93469 -14.65755 -14.22895 -13.56418 -13.44761 -13.31338 -13.18672 -12.96245 -12.84583 -12.63291 -12.49762 -12.01875 -11.92620 -11.83030 -11.57538 -11.34968 -11.21829 -11.08349 -11.03002 -10.55449 -10.43095 -10.30822 -10.07782 -9.93500 -9.85774 -9.40567 -9.26893 -8.71927 -8.50839 -8.04332 -8.01175 -6.54466 -4.17686 1.64177 1.81396 2.85313 2.91733 3.00634 3.11465 3.14852 3.64717 3.93885 4.02495 4.12745 4.44270 4.72719 4.84035 5.10468 5.22765 5.31076 5.33960 5.36101 5.41574 5.45228 5.49004 5.58548 5.60853 5.76606 5.79356 5.81565 5.84377 5.95692 6.06838 6.16456 6.25736 6.39678 6.47262 6.52883 6.60183 6.61121 6.62425 6.86008 6.90589 7.09286 7.14013 7.44073 7.93642 8.17047 8.42540 8.82366 9.18046 9.49889 10.53456 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.010409 B = 0.006666 C = 0.004870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2689.288121 B = 4199.509112 C = 5747.801183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.372 6.372 3 C 0.446 3.554 4 O -0.476 6.476 5 C 0.109 3.891 6 N -0.444 5.444 7 C -0.333 4.333 8 H 0.117 0.883 9 C 0.065 3.935 10 N -0.856 5.856 11 Si 0.863 3.137 12 H -0.271 1.271 13 H -0.283 1.283 14 H -0.259 1.259 15 C 0.530 3.470 16 O -0.584 6.584 17 C -0.109 4.109 18 C -0.037 4.037 19 C -0.092 4.092 20 C -0.082 4.082 21 C -0.165 4.165 22 C 0.080 3.920 23 F -0.152 7.152 24 C -0.137 4.137 25 C -0.042 4.042 26 C -0.164 4.164 27 C -0.145 4.145 28 H 0.092 0.908 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.099 0.901 32 H 0.109 0.891 33 H 0.276 0.724 34 H 0.094 0.906 35 H 0.072 0.928 36 H 0.123 0.877 37 H 0.124 0.876 38 H 0.125 0.875 39 H 0.142 0.858 40 H 0.094 0.906 41 H 0.094 0.906 42 H 0.094 0.906 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.160 1.568 5.795 6.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.289 6.289 3 C 0.286 3.714 4 O -0.360 6.360 5 C -0.016 4.016 6 N -0.164 5.164 7 C -0.460 4.460 8 H 0.134 0.866 9 C -0.143 4.143 10 N -0.492 5.492 11 Si 0.691 3.309 12 H -0.199 1.199 13 H -0.209 1.209 14 H -0.183 1.183 15 C 0.320 3.680 16 O -0.467 6.467 17 C -0.112 4.112 18 C -0.075 4.075 19 C -0.092 4.092 20 C -0.100 4.100 21 C -0.184 4.184 22 C 0.061 3.939 23 F -0.131 7.131 24 C -0.155 4.155 25 C -0.060 4.060 26 C -0.201 4.201 27 C -0.182 4.182 28 H 0.111 0.889 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.116 0.884 32 H 0.126 0.874 33 H 0.087 0.913 34 H 0.112 0.888 35 H 0.091 0.909 36 H 0.141 0.859 37 H 0.142 0.858 38 H 0.143 0.857 39 H 0.160 0.840 40 H 0.112 0.888 41 H 0.112 0.888 42 H 0.113 0.887 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -2.479 1.615 6.113 6.792 hybrid contribution -0.095 -1.158 -0.159 1.173 sum -2.575 0.457 5.954 6.503 Atomic orbital electron populations 1.23104 0.77584 1.02710 1.02187 1.86516 1.22612 1.34741 1.85031 1.24665 0.92707 0.81361 0.72679 1.90618 1.66339 1.35738 1.43300 1.21337 0.87331 0.88607 1.04361 1.43335 1.58241 1.08155 1.06702 1.19228 1.42918 0.98271 0.85566 0.86588 1.25346 0.95786 0.98014 0.95121 1.69639 1.43272 1.38522 0.97727 0.87153 0.80836 0.83524 0.79404 1.19864 1.20945 1.18305 1.19294 0.79249 0.86653 0.82774 1.90562 1.55835 1.68279 1.31981 1.20881 0.91750 0.93849 1.04745 1.20151 0.89754 0.95636 1.01910 1.19879 0.95885 0.99200 0.94207 1.20732 0.95210 0.99289 0.94776 1.20895 0.94037 1.03346 1.00090 1.17753 0.80733 1.02030 0.93396 1.91427 1.41799 1.92605 1.87260 1.20984 0.98978 1.01892 0.93682 1.21091 0.90915 0.92930 1.01069 1.23059 1.02587 1.02064 0.92399 1.22864 0.95156 1.03321 0.96843 0.88939 0.92380 0.92222 0.88400 0.87359 0.91298 0.88762 0.90922 0.85874 0.85798 0.85667 0.84015 0.88810 0.88753 0.88726 0.88405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.55 10.56 101.05 1.07 1.62 16 2 O -0.37 -6.87 10.57 -39.26 -0.41 -7.28 16 3 C 0.45 9.44 8.02 36.01 0.29 9.73 16 4 O -0.48 -10.59 12.77 -18.75 -0.24 -10.83 16 5 C 0.11 2.35 4.77 -5.20 -0.02 2.32 16 6 N -0.44 -9.97 1.72 -116.09 -0.20 -10.17 16 7 C -0.33 -7.83 8.74 -14.93 -0.13 -7.96 16 8 H 0.12 2.82 4.97 -52.48 -0.26 2.56 16 9 C 0.06 1.57 5.38 -17.47 -0.09 1.48 16 10 N -0.86 -21.97 13.95 55.50 0.77 -21.19 16 11 Si 0.86 18.64 24.73 -169.99 -4.20 14.44 16 12 H -0.27 -5.70 6.75 56.52 0.38 -5.31 16 13 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 14 H -0.26 -5.52 7.05 56.52 0.40 -5.12 16 15 C 0.53 11.68 5.55 -10.98 -0.06 11.62 16 16 O -0.58 -14.24 16.49 5.55 0.09 -14.15 16 17 C -0.11 -2.00 1.24 -155.65 -0.19 -2.20 16 18 C -0.04 -0.63 5.03 -27.89 -0.14 -0.77 16 19 C -0.09 -1.64 4.24 -104.62 -0.44 -2.08 16 20 C -0.08 -1.35 9.73 -39.59 -0.39 -1.73 16 21 C -0.16 -2.72 10.03 -39.51 -0.40 -3.11 16 22 C 0.08 1.43 7.30 -39.42 -0.29 1.14 16 23 F -0.15 -2.66 17.27 2.25 0.04 -2.62 16 24 C -0.14 -2.54 9.11 -39.51 -0.36 -2.90 16 25 C -0.04 -0.81 7.59 -39.59 -0.30 -1.11 16 26 C -0.16 -2.54 9.73 -26.73 -0.26 -2.80 16 27 C -0.14 -2.35 9.75 -26.72 -0.26 -2.61 16 28 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.06 0.84 8.13 -51.93 -0.42 0.42 16 30 H 0.06 0.85 8.13 -51.93 -0.42 0.43 16 31 H 0.10 2.10 2.67 -51.93 -0.14 1.97 16 32 H 0.11 2.23 7.46 -51.93 -0.39 1.84 16 33 H 0.28 6.70 8.32 -40.82 -0.34 6.36 16 34 H 0.09 1.69 5.83 -51.93 -0.30 1.39 16 35 H 0.07 1.01 7.95 -51.93 -0.41 0.59 16 36 H 0.12 1.73 8.06 -52.49 -0.42 1.30 16 37 H 0.12 1.73 8.06 -52.49 -0.42 1.31 16 38 H 0.13 2.24 8.06 -52.48 -0.42 1.81 16 39 H 0.14 3.00 7.25 -52.49 -0.38 2.62 16 40 H 0.09 1.20 8.09 -51.93 -0.42 0.78 16 41 H 0.09 1.55 8.12 -51.93 -0.42 1.13 16 42 H 0.09 1.64 8.14 -51.93 -0.42 1.21 16 43 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 360.67 15.07 5.44 5.44 Total: -1.00 -28.68 360.67 -5.96 -34.64 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: -5.26 Total: 11.10 kcal Atomic # 6 Polarization: 2.61 SS G_CDS: -1.98 Total: 0.63 kcal Atomic # 7 Polarization: -31.94 SS G_CDS: 0.57 Total: -31.36 kcal Atomic # 8 Polarization: -31.70 SS G_CDS: -0.56 Total: -32.26 kcal Atomic # 9 Polarization: -2.66 SS G_CDS: 0.04 Total: -2.62 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -4.20 Total: 14.44 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -28.68 -5.96 -34.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000445834119.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.351 kcal (2) G-P(sol) polarization free energy of solvation -28.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds